Wall clock time and date at job start Wed Apr 1 2020 03:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47231 * 2 1 4 4 C 1.34417 * 124.35138 * 269.97656 * 3 2 1 5 5 O 1.21289 * 124.93707 * 0.40348 * 4 3 2 6 6 C 1.51276 * 110.11855 * 180.42465 * 4 3 2 7 7 C 1.54861 * 104.21045 * 16.26903 * 6 4 3 8 8 H 1.09000 * 111.03999 * 217.09803 * 7 6 4 9 9 C 1.50697 * 111.00093 * 93.26212 * 7 6 4 10 10 O 1.21279 * 119.99948 * 247.73795 * 9 7 6 11 11 N 1.34774 * 120.00106 * 67.73165 * 9 7 6 12 12 C 1.46498 * 120.00257 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46744 * 35.00647 * 12 11 9 14 14 C 1.52997 * 109.47196 * 275.00434 * 12 11 9 15 15 C 1.50704 * 109.46907 * 155.00194 * 12 11 9 16 16 H 1.07998 * 120.00121 * 35.00631 * 15 12 11 17 17 C 1.37876 * 119.99894 * 215.00251 * 15 12 11 18 18 N 1.31513 * 120.00374 * 184.91696 * 17 15 12 19 19 Si 1.86806 * 120.00043 * 4.91876 * 17 15 12 20 20 H 1.48504 * 109.47031 * 84.83256 * 19 17 15 21 21 H 1.48503 * 109.47227 * 204.83285 * 19 17 15 22 22 H 1.48499 * 109.47163 * 324.83116 * 19 17 15 23 23 C 1.46764 * 124.35024 * 89.99529 * 3 2 1 24 24 H 1.08999 * 110.24235 * 43.88033 * 23 3 2 25 25 C 1.50696 * 110.24816 * 281.96709 * 23 3 2 26 26 C 1.38254 * 120.00011 * 322.90820 * 25 23 3 27 27 C 1.38220 * 120.00098 * 180.23346 * 26 25 23 28 28 C 1.38251 * 119.99626 * 359.48804 * 27 26 25 29 29 C 1.38207 * 120.00289 * 0.25855 * 28 27 26 30 30 C 1.50703 * 120.00031 * 180.02562 * 29 28 27 31 31 C 1.38215 * 119.99945 * 142.62965 * 25 23 3 32 32 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47161 * 300.00001 * 1 2 3 34 34 H 1.08999 * 109.47239 * 59.99730 * 1 2 3 35 35 H 1.08993 * 109.47456 * 239.99568 * 2 1 3 36 36 H 1.08999 * 109.47132 * 119.99491 * 2 1 3 37 37 H 1.09010 * 110.48524 * 134.93148 * 6 4 3 38 38 H 1.08998 * 110.49144 * 257.57257 * 6 4 3 39 39 H 0.97008 * 119.99573 * 0.02562 * 11 9 7 40 40 H 1.08998 * 109.47260 * 55.03182 * 14 12 11 41 41 H 1.09003 * 109.46980 * 175.03454 * 14 12 11 42 42 H 1.09002 * 109.46939 * 295.03063 * 14 12 11 43 43 H 0.96999 * 120.00286 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.00128 * 359.97438 * 26 25 23 45 45 H 1.07996 * 119.99970 * 179.76119 * 27 26 25 46 46 H 1.08005 * 119.99551 * 180.27708 * 28 27 26 47 47 H 1.09000 * 109.47141 * 89.99879 * 30 29 28 48 48 H 1.09003 * 109.46840 * 209.99545 * 30 29 28 49 49 H 1.08997 * 109.47127 * 329.99559 * 30 29 28 50 50 H 1.07995 * 120.00283 * 0.02562 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2716 2.0962 -1.1097 5 8 2.1224 1.6939 -2.2442 6 6 2.7702 3.4751 -0.7378 7 6 3.1759 3.3440 0.7509 8 1 2.9326 4.2510 1.3042 9 6 4.6392 3.0095 0.8844 10 8 4.9770 1.9249 1.3093 11 7 5.5725 3.9155 0.5316 12 6 6.9950 3.5906 0.6619 13 1 7.1478 2.5337 0.4430 14 6 7.4573 3.8877 2.0898 15 6 7.7917 4.4248 -0.3079 16 1 7.4845 5.4362 -0.5294 17 6 8.9127 3.8967 -0.9124 18 7 9.6626 4.6539 -1.6832 19 14 9.3666 2.1058 -0.6367 20 1 8.6183 1.2524 -1.5944 21 1 10.8254 1.9264 -0.8491 22 1 9.0169 1.7147 0.7525 23 6 2.2943 2.1620 1.2117 24 1 2.8306 1.5526 1.9390 25 6 1.0076 2.6724 1.8076 26 6 -0.0215 3.0839 0.9812 27 6 -1.1998 3.5566 1.5277 28 6 -1.3532 3.6077 2.9007 29 6 -0.3264 3.1914 3.7269 30 6 -0.4939 3.2467 5.2235 31 6 0.8543 2.7235 3.1802 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8900 37 1 3.6336 3.7454 -1.3458 38 1 1.9755 4.2122 -0.8532 39 1 5.3022 4.7831 0.1921 40 1 6.8231 3.3518 2.7959 41 1 8.4910 3.5641 2.2117 42 1 7.3872 4.9589 2.2789 43 1 10.4510 4.2823 -2.1088 44 1 0.0968 3.0401 -0.0914 45 1 -2.0022 3.8817 0.8822 46 1 -2.2756 3.9729 3.3278 47 1 -0.9153 2.3056 5.5770 48 1 0.4769 3.4086 5.6920 49 1 -1.1642 4.0656 5.4841 50 1 1.6566 2.3982 3.8258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878534161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:13 Heat of formation + Delta-G solvation = -74.692548 kcal Electronic energy + Delta-G solvation = -31201.498301 eV Core-core repulsion = 27192.149999 eV Total energy + Delta-G solvation = -4009.348302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43765 -40.32535 -39.94238 -37.65525 -36.66406 -35.09556 -34.36544 -33.52349 -32.38568 -31.75565 -30.36144 -28.31148 -27.72635 -27.33256 -25.40197 -24.08485 -23.04662 -22.44873 -21.73487 -21.19502 -20.20925 -19.44423 -18.28983 -18.00440 -17.28269 -17.17750 -16.83886 -16.51931 -16.06173 -15.81227 -15.65678 -15.51285 -15.14653 -14.95049 -14.59370 -14.52327 -14.45439 -14.38939 -14.15944 -13.96037 -13.80777 -13.44485 -13.26410 -13.12661 -13.08414 -13.05493 -12.89181 -12.79115 -12.68596 -12.50991 -12.42241 -12.02032 -11.98024 -11.90083 -11.85508 -11.24099 -10.99445 -10.88207 -10.74373 -9.93916 -9.83230 -9.70045 -9.44183 -8.40671 -6.46047 0.37545 0.50692 1.25882 1.31568 1.40263 1.42158 1.65377 1.90776 2.24162 2.32683 2.80075 3.00928 3.23781 3.30465 3.57317 3.72384 3.93545 4.01553 4.05614 4.08536 4.23813 4.27797 4.29953 4.43794 4.46203 4.48058 4.54796 4.60244 4.68965 4.72233 4.75300 4.76718 4.84034 4.85558 4.89676 4.90716 5.02306 5.10946 5.16077 5.22609 5.34536 5.37398 5.43022 5.46311 5.60439 5.71320 5.72633 5.74750 6.00666 6.10154 6.12656 6.59764 6.85424 7.02282 7.19563 7.40338 8.74285 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003278 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.394678 B = 8541.012716 C = 9474.377791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.117 3.883 3 N -0.601 5.601 4 C 0.509 3.491 5 O -0.576 6.576 6 C -0.143 4.143 7 C -0.102 4.102 8 H 0.158 0.842 9 C 0.508 3.492 10 O -0.586 6.586 11 N -0.698 5.698 12 C 0.234 3.766 13 H 0.026 0.974 14 C -0.139 4.139 15 C -0.525 4.525 16 H 0.061 0.939 17 C 0.034 3.966 18 N -0.929 5.929 19 Si 0.922 3.078 20 H -0.282 1.282 21 H -0.277 1.277 22 H -0.253 1.253 23 C 0.193 3.807 24 H 0.102 0.898 25 C -0.093 4.093 26 C -0.110 4.110 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.089 4.089 30 C -0.115 4.115 31 C -0.113 4.113 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.408 0.592 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.270 0.730 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.508 -2.125 13.048 28.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 N -0.332 5.332 4 C 0.298 3.702 5 O -0.456 6.456 6 C -0.183 4.183 7 C -0.124 4.124 8 H 0.175 0.825 9 C 0.295 3.705 10 O -0.467 6.467 11 N -0.347 5.347 12 C 0.130 3.870 13 H 0.044 0.956 14 C -0.198 4.198 15 C -0.563 4.563 16 H 0.079 0.921 17 C -0.166 4.166 18 N -0.567 5.567 19 Si 0.747 3.253 20 H -0.208 1.208 21 H -0.202 1.202 22 H -0.177 1.177 23 C 0.089 3.911 24 H 0.120 0.880 25 C -0.094 4.094 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.136 4.136 29 C -0.089 4.089 30 C -0.171 4.171 31 C -0.131 4.131 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.166 0.834 39 H 0.243 0.757 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.126 0.874 45 H 0.155 0.845 46 H 0.159 0.841 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.156 -3.180 12.650 28.336 hybrid contribution 0.871 -0.482 -0.751 1.247 sum -24.285 -3.662 11.899 27.290 Atomic orbital electron populations 1.22077 0.94010 1.03125 1.01974 1.21471 0.95585 0.80362 1.03038 1.48346 1.64468 1.13961 1.06427 1.21254 0.76138 0.88634 0.84158 1.90690 1.55927 1.76335 1.22642 1.22499 1.04940 0.95922 0.94905 1.22368 0.90152 1.01805 0.98055 0.82485 1.20755 0.88548 0.84105 0.77119 1.90637 1.83156 1.24564 1.48357 1.46332 1.06557 1.18147 1.63614 1.18889 0.78555 0.95466 0.94058 0.95586 1.22088 0.99874 1.01332 0.96524 1.21220 1.09846 1.00384 1.24857 0.92122 1.25567 0.96146 1.00786 0.94141 1.69965 1.16609 1.37692 1.32453 0.86135 0.77629 0.81638 0.79883 1.20769 1.20217 1.17707 1.20330 0.92434 0.91401 0.86975 0.87992 1.19772 0.94679 1.01012 0.93963 1.20908 0.93733 0.99057 0.99181 1.21318 0.97419 0.99174 0.95688 1.21331 0.99244 0.99793 0.93260 1.20147 0.93473 0.97987 0.97284 1.20840 1.03276 1.03148 0.89850 1.21008 0.98148 1.00298 0.93670 0.89911 0.91626 0.93713 0.91751 0.89086 0.88008 0.83398 0.75665 0.93981 0.93633 0.92083 0.92071 0.87369 0.84526 0.84123 0.90502 0.91202 0.90373 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.68 71.98 0.70 -2.19 16 2 C 0.12 2.74 6.64 86.38 0.57 3.32 16 3 N -0.60 -15.87 2.05 -798.32 -1.63 -17.51 16 4 C 0.51 15.81 6.91 87.90 0.61 16.42 16 5 O -0.58 -22.53 17.60 -3.06 -0.05 -22.59 16 6 C -0.14 -3.47 5.87 30.67 0.18 -3.29 16 7 C -0.10 -2.42 3.07 -10.40 -0.03 -2.45 16 8 H 0.16 2.64 7.89 -2.39 -0.02 2.62 16 9 C 0.51 17.38 7.05 87.66 0.62 17.99 16 10 O -0.59 -24.44 15.19 -3.03 -0.05 -24.48 16 11 N -0.70 -25.64 5.00 -446.11 -2.23 -27.87 16 12 C 0.23 10.67 2.22 44.25 0.10 10.76 16 13 H 0.03 1.33 4.73 -2.39 -0.01 1.32 16 14 C -0.14 -5.68 9.47 71.98 0.68 -5.00 16 15 C -0.52 -27.79 9.05 25.60 0.23 -27.55 16 16 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 17 C 0.03 1.92 5.47 84.65 0.46 2.38 16 18 N -0.93 -55.26 13.96 21.45 0.30 -54.96 16 19 Si 0.92 44.92 26.99 68.60 1.85 46.77 16 20 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.25 -11.90 6.82 99.48 0.68 -11.22 16 23 C 0.19 4.44 2.67 44.70 0.12 4.56 16 24 H 0.10 2.64 6.93 -2.39 -0.02 2.63 16 25 C -0.09 -1.70 4.31 -19.87 -0.09 -1.79 16 26 C -0.11 -1.91 7.50 22.27 0.17 -1.74 16 27 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 28 C -0.12 -1.50 9.70 22.27 0.22 -1.29 16 29 C -0.09 -1.22 5.88 -19.87 -0.12 -1.34 16 30 C -0.11 -1.08 10.01 71.24 0.71 -0.37 16 31 C -0.11 -1.85 9.34 22.27 0.21 -1.64 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.18 6.51 -2.39 -0.02 1.16 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.73 7.93 -2.39 -0.02 1.71 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 2.79 7.85 -2.38 -0.02 2.77 16 38 H 0.15 2.53 7.96 -2.39 -0.02 2.51 16 39 H 0.41 12.85 8.59 -92.70 -0.80 12.05 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.11 2.07 6.30 -2.91 -0.02 2.05 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 46 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 47 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 49 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 50 H 0.13 1.97 8.05 -2.91 -0.02 1.95 16 Total: -1.00 -73.32 405.10 3.87 -69.45 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.12 Total: 25.84 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.56 Total: 5.35 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -3.57 Total: -100.33 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -0.10 Total: -47.07 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.85 Total: 46.77 kcal Total: -73.32 3.87 -69.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878534161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.245 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds