Wall clock time and date at job start Wed Apr 1 2020 03:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.47281 * 2 1 4 4 C 1.37093 * 119.99885 * 267.36053 * 3 2 1 5 5 H 1.08004 * 120.00160 * 314.83016 * 4 3 2 6 6 C 1.38949 * 120.00171 * 134.82635 * 4 3 2 7 7 N 1.31410 * 119.99947 * 160.70217 * 6 4 3 8 8 Si 1.86796 * 119.99755 * 340.69939 * 6 4 3 9 9 H 1.48495 * 109.47265 * 95.61107 * 8 6 4 10 10 H 1.48506 * 109.47138 * 215.60977 * 8 6 4 11 11 H 1.48498 * 109.47675 * 335.61092 * 8 6 4 12 12 C 1.34770 * 119.99935 * 87.35950 * 3 2 1 13 13 O 1.21291 * 119.99846 * 184.68712 * 12 3 2 14 14 C 1.50696 * 120.00456 * 4.68875 * 12 3 2 15 15 H 1.09001 * 110.85741 * 328.62078 * 14 12 3 16 16 C 1.54633 * 110.97198 * 204.79295 * 14 12 3 17 17 C 1.51279 * 104.19483 * 266.67539 * 16 14 12 18 18 O 1.21282 * 124.94362 * 163.74594 * 17 16 14 19 19 N 1.34424 * 110.11740 * 343.74780 * 17 16 14 20 20 C 1.46493 * 124.34920 * 179.56761 * 19 17 16 21 21 C 1.53001 * 109.47706 * 276.03410 * 20 19 17 22 22 C 1.46760 * 111.29718 * 359.59000 * 19 17 16 23 23 H 1.09002 * 110.32458 * 257.97446 * 22 19 17 24 24 C 1.50702 * 110.24351 * 136.01594 * 22 19 17 25 25 C 1.38260 * 120.00374 * 314.66486 * 24 22 19 26 26 C 1.38209 * 120.00206 * 179.97438 * 25 24 22 27 27 C 1.38258 * 120.00227 * 359.95733 * 26 25 24 28 28 C 1.38217 * 119.99871 * 0.27523 * 27 26 25 29 29 C 1.50695 * 119.99954 * 179.72475 * 28 27 26 30 30 C 1.38213 * 120.00142 * 134.63740 * 24 22 19 31 31 H 1.08999 * 109.47084 * 305.12702 * 1 2 3 32 32 H 1.08996 * 109.46742 * 65.12227 * 1 2 3 33 33 H 1.08993 * 109.47175 * 185.12758 * 1 2 3 34 34 H 1.08993 * 109.47221 * 239.99277 * 2 1 3 35 35 H 1.09002 * 109.46817 * 119.99758 * 2 1 3 36 36 H 0.97009 * 119.99458 * 179.97438 * 7 6 4 37 37 H 1.08998 * 110.48476 * 25.35705 * 16 14 12 38 38 H 1.09006 * 110.48498 * 147.86638 * 16 14 12 39 39 H 1.09005 * 109.47195 * 36.03755 * 20 19 17 40 40 H 1.09006 * 109.46949 * 156.03275 * 20 19 17 41 41 H 1.09006 * 109.46902 * 286.31636 * 21 20 19 42 42 H 1.09001 * 109.46864 * 46.31116 * 21 20 19 43 43 H 1.08998 * 109.47404 * 166.31318 * 21 20 19 44 44 H 1.07996 * 119.99445 * 359.97438 * 25 24 22 45 45 H 1.07997 * 119.99981 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.99988 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.46923 * 90.00109 * 29 28 27 48 48 H 1.09001 * 109.46852 * 210.00156 * 29 28 27 49 49 H 1.08999 * 109.47209 * 329.99889 * 29 28 27 50 50 H 1.08008 * 120.00013 * 0.02562 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2985 2.0092 -1.1860 5 1 2.8575 1.4923 -1.9520 6 6 1.8631 3.3109 -1.4027 7 7 2.4259 4.0451 -2.3360 8 14 0.4779 4.0168 -0.3673 9 1 1.0500 4.7876 0.7657 10 1 -0.3580 4.9145 -1.2046 11 1 -0.3598 2.9099 0.1600 12 6 2.1924 2.0345 1.1659 13 8 2.5148 3.2037 1.1637 14 6 1.9864 1.3122 2.4724 15 1 1.2238 0.5398 2.3727 16 6 1.6258 2.3043 3.6024 17 6 2.9558 2.6380 4.2413 18 8 3.1563 3.5823 4.9755 19 7 3.8832 1.7357 3.8769 20 6 5.2823 1.7676 4.3098 21 6 6.0762 2.7082 3.4010 22 6 3.3139 0.7150 2.9894 23 1 3.1236 -0.2046 3.5429 24 6 4.2479 0.4457 1.8378 25 6 4.8325 1.4999 1.1606 26 6 5.6895 1.2529 0.1048 27 6 5.9630 -0.0484 -0.2737 28 6 5.3749 -1.1022 0.4001 29 6 5.6682 -2.5204 -0.0165 30 6 4.5207 -0.8552 1.4588 31 1 -0.3633 0.5913 0.8405 32 1 -0.3633 0.4323 -0.9323 33 1 -0.3633 -1.0235 0.0918 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.1216 4.9537 -2.4875 37 1 1.1650 3.2017 3.1895 38 1 0.9603 1.8331 4.3257 39 1 5.3365 2.1246 5.3383 40 1 5.7038 0.7640 4.2509 41 1 6.2288 2.2337 2.4315 42 1 5.5225 3.6375 3.2675 43 1 7.0429 2.9233 3.8563 44 1 4.6193 2.5164 1.4567 45 1 6.1457 2.0764 -0.4244 46 1 6.6330 -0.2413 -1.0985 47 1 6.5334 -2.8893 0.5343 48 1 4.8044 -3.1488 0.2005 49 1 5.8789 -2.5489 -1.0856 50 1 4.0641 -1.6788 1.9877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888556123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:39 Heat of formation + Delta-G solvation = -39.081680 kcal Electronic energy + Delta-G solvation = -33890.194097 eV Core-core repulsion = 29882.389998 eV Total energy + Delta-G solvation = -4007.804099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.52731 -40.23537 -39.83145 -37.53452 -36.65031 -35.08317 -34.14987 -33.53200 -32.29435 -31.18639 -30.70762 -28.35750 -27.58237 -26.78362 -24.85080 -24.24113 -23.46405 -22.87166 -21.83888 -20.65782 -20.10385 -19.29848 -17.95301 -17.84765 -17.24866 -17.08976 -16.64874 -16.51203 -15.96728 -15.77874 -15.63778 -15.28683 -15.04630 -14.78265 -14.63849 -14.56043 -14.34956 -14.18117 -14.04161 -13.83528 -13.54286 -13.45840 -13.29068 -13.27216 -12.92464 -12.86531 -12.80681 -12.74665 -12.59345 -12.48201 -12.22594 -12.00452 -11.93213 -11.79850 -11.70933 -11.51692 -10.87098 -10.71312 -10.29952 -9.83532 -9.55813 -9.43972 -9.17138 -8.35588 -6.07241 0.48802 0.66852 1.22171 1.31571 1.50051 1.51684 1.98793 2.08976 2.46270 2.70939 2.92869 3.15975 3.31006 3.49208 3.68742 3.91298 3.98486 4.08069 4.08999 4.14357 4.24818 4.28367 4.39879 4.43819 4.45402 4.51137 4.60304 4.65035 4.68640 4.71331 4.75765 4.77542 4.82959 4.91652 4.92098 5.01922 5.08846 5.12988 5.17610 5.23343 5.28688 5.43280 5.51496 5.54945 5.76060 5.77696 5.80720 5.85659 5.99330 6.09406 6.27884 6.89217 7.03473 7.12443 7.46624 8.02368 8.73772 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009032 B = 0.007389 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.180986 B = 3788.678273 C = 5107.333158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.462 5.462 4 C -0.309 4.309 5 H 0.060 0.940 6 C 0.045 3.955 7 N -0.917 5.917 8 Si 0.951 3.049 9 H -0.293 1.293 10 H -0.320 1.320 11 H -0.246 1.246 12 C 0.469 3.531 13 O -0.590 6.590 14 C -0.119 4.119 15 H 0.156 0.844 16 C -0.139 4.139 17 C 0.520 3.480 18 O -0.584 6.584 19 N -0.604 5.604 20 C 0.131 3.869 21 C -0.177 4.177 22 C 0.195 3.805 23 H 0.154 0.846 24 C -0.112 4.112 25 C -0.076 4.076 26 C -0.136 4.136 27 C -0.116 4.116 28 C -0.094 4.094 29 C -0.105 4.105 30 C -0.091 4.091 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.122 0.878 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.060 0.940 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -20.634 11.430 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.183 5.183 4 C -0.437 4.437 5 H 0.078 0.922 6 C -0.158 4.158 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.222 1.222 10 H -0.251 1.251 11 H -0.169 1.169 12 C 0.260 3.740 13 O -0.475 6.475 14 C -0.141 4.141 15 H 0.173 0.827 16 C -0.179 4.179 17 C 0.310 3.690 18 O -0.465 6.465 19 N -0.336 5.336 20 C 0.010 3.990 21 C -0.235 4.235 22 C 0.092 3.908 23 H 0.171 0.829 24 C -0.113 4.113 25 C -0.095 4.095 26 C -0.155 4.155 27 C -0.134 4.134 28 C -0.094 4.094 29 C -0.161 4.161 30 C -0.109 4.109 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.103 0.897 46 H 0.140 0.860 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.079 0.921 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.544 -19.481 11.705 22.869 hybrid contribution -0.287 2.295 -0.773 2.439 sum 2.257 -17.185 10.932 20.493 Atomic orbital electron populations 1.22245 0.95845 1.03220 1.01189 1.21827 0.94404 0.82909 1.03278 1.43647 1.57926 1.13184 1.03505 1.18439 1.34027 0.97271 0.93991 0.92238 1.25852 0.97777 0.96874 0.95287 1.69864 1.40987 1.08950 1.35843 0.85704 0.78705 0.79002 0.78320 1.22155 1.25061 1.16913 1.20597 0.79722 0.87566 0.86156 1.90549 1.51354 1.18693 1.86942 1.22631 1.00166 0.99518 0.91757 0.82690 1.22336 0.96222 1.01068 0.98273 1.21097 0.88133 0.80667 0.79140 1.90636 1.84499 1.30949 1.40383 1.48425 1.09962 1.27568 1.47678 1.21366 0.78489 1.01569 0.97620 1.22500 1.00419 0.98948 1.01584 1.20805 0.89103 0.92412 0.88504 0.82897 1.19774 0.99654 0.93909 0.97915 1.20844 0.95162 0.98621 0.94838 1.20959 0.99927 0.97167 0.97424 1.21125 1.00425 0.91953 0.99942 1.20083 0.97081 0.96322 0.95908 1.20767 1.03231 0.90600 1.01519 1.21087 0.97689 0.95175 0.96950 0.93302 0.94715 0.88127 0.91301 0.88215 0.92693 0.90822 0.82750 0.90418 0.86886 0.91588 0.96480 0.90120 0.89390 0.89676 0.86024 0.90083 0.89579 0.92085 0.81661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 10.01 71.98 0.72 -3.61 16 2 C 0.10 2.87 5.45 86.38 0.47 3.34 16 3 N -0.46 -19.29 1.65 -635.54 -1.05 -20.34 16 4 C -0.31 -16.72 9.66 84.04 0.81 -15.91 16 5 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 6 C 0.04 2.67 4.85 84.93 0.41 3.08 16 7 N -0.92 -58.60 13.96 21.66 0.30 -58.30 16 8 Si 0.95 51.26 24.89 68.60 1.71 52.97 16 9 H -0.29 -17.43 6.37 99.48 0.63 -16.80 16 10 H -0.32 -17.36 7.11 99.48 0.71 -16.65 16 11 H -0.25 -11.65 7.11 99.48 0.71 -10.95 16 12 C 0.47 19.56 2.42 87.66 0.21 19.77 16 13 O -0.59 -31.75 9.96 -3.06 -0.03 -31.78 16 14 C -0.12 -3.37 2.49 -10.48 -0.03 -3.39 16 15 H 0.16 2.97 5.91 -2.39 -0.01 2.96 16 16 C -0.14 -4.23 6.08 30.59 0.19 -4.04 16 17 C 0.52 18.65 7.93 87.90 0.70 19.34 16 18 O -0.58 -25.80 17.68 -3.03 -0.05 -25.86 16 19 N -0.60 -17.45 2.42 -798.32 -1.93 -19.38 16 20 C 0.13 3.33 5.98 86.38 0.52 3.85 16 21 C -0.18 -5.45 8.75 71.98 0.63 -4.82 16 22 C 0.19 4.53 3.37 44.70 0.15 4.68 16 23 H 0.15 1.87 7.97 -2.39 -0.02 1.85 16 24 C -0.11 -2.98 2.91 -19.86 -0.06 -3.04 16 25 C -0.08 -2.81 3.86 22.27 0.09 -2.72 16 26 C -0.14 -5.07 9.88 22.27 0.22 -4.85 16 27 C -0.12 -3.40 9.70 22.27 0.22 -3.19 16 28 C -0.09 -2.07 5.88 -19.87 -0.12 -2.19 16 29 C -0.10 -1.50 10.01 71.23 0.71 -0.78 16 30 C -0.09 -1.81 8.64 22.27 0.19 -1.62 16 31 H 0.05 1.27 7.58 -2.39 -0.02 1.25 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.08 8.02 -2.39 -0.02 2.06 16 35 H 0.10 2.06 5.16 -2.39 -0.01 2.05 16 36 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 37 H 0.07 2.83 7.50 -2.39 -0.02 2.82 16 38 H 0.15 3.06 8.14 -2.38 -0.02 3.04 16 39 H 0.08 1.95 8.06 -2.38 -0.02 1.94 16 40 H 0.11 2.09 8.09 -2.38 -0.02 2.07 16 41 H 0.07 2.16 4.62 -2.38 -0.01 2.15 16 42 H 0.02 0.65 8.13 -2.39 -0.02 0.63 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.09 4.11 5.03 -2.91 -0.01 4.09 16 45 H 0.08 3.52 8.06 -2.91 -0.02 3.50 16 46 H 0.12 3.21 8.06 -2.91 -0.02 3.18 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 49 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 50 H 0.17 1.73 8.00 -2.91 -0.02 1.70 16 Total: -1.00 -87.23 382.44 5.84 -81.39 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.86 Total: 17.41 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.03 Total: 3.89 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -2.68 Total: -98.02 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -0.08 Total: -57.64 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.71 Total: 52.97 kcal Total: -87.23 5.84 -81.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.306 kcal (2) G-P(sol) polarization free energy of solvation -87.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds