Wall clock time and date at job start Wed Apr 1 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46918 * 2 1 4 4 C 1.37097 * 120.00015 * 263.25298 * 3 2 1 5 5 H 1.07999 * 119.99620 * 189.29174 * 4 3 2 6 6 C 1.38949 * 120.00134 * 9.28456 * 4 3 2 7 7 N 1.31414 * 119.99508 * 16.97252 * 6 4 3 8 8 Si 1.86799 * 120.00278 * 196.97357 * 6 4 3 9 9 H 1.48498 * 109.46814 * 60.00178 * 8 6 4 10 10 H 1.48499 * 109.47214 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.46997 * 300.00193 * 8 6 4 12 12 C 1.34781 * 119.99798 * 83.25869 * 3 2 1 13 13 O 1.21284 * 120.00077 * 5.39575 * 12 3 2 14 14 C 1.50696 * 119.99873 * 185.40135 * 12 3 2 15 15 H 1.09007 * 110.85464 * 35.42455 * 14 12 3 16 16 C 1.54630 * 110.97011 * 271.63911 * 14 12 3 17 17 C 1.51282 * 104.19577 * 266.68093 * 16 14 12 18 18 O 1.21275 * 124.94526 * 163.71203 * 17 16 14 19 19 N 1.34423 * 110.11154 * 343.74330 * 17 16 14 20 20 C 1.46502 * 124.34571 * 179.57315 * 19 17 16 21 21 C 1.52998 * 109.47125 * 89.97755 * 20 19 17 22 22 C 1.46768 * 111.30243 * 359.59402 * 19 17 16 23 23 H 1.08993 * 110.24393 * 136.01537 * 22 19 17 24 24 C 1.50697 * 110.24523 * 258.01695 * 22 19 17 25 25 C 1.38259 * 120.00349 * 35.77551 * 24 22 19 26 26 C 1.38215 * 120.00071 * 179.81471 * 25 24 22 27 27 C 1.38260 * 119.99806 * 0.38876 * 26 25 24 28 28 C 1.38213 * 119.99916 * 359.86270 * 27 26 25 29 29 C 1.50698 * 119.99781 * 179.97438 * 28 27 26 30 30 C 1.38216 * 119.99558 * 216.04775 * 24 22 19 31 31 H 1.09000 * 109.47355 * 293.12309 * 1 2 3 32 32 H 1.09000 * 109.47234 * 53.12393 * 1 2 3 33 33 H 1.09000 * 109.46999 * 173.11793 * 1 2 3 34 34 H 1.08994 * 109.47327 * 239.99691 * 2 1 3 35 35 H 1.09005 * 109.47240 * 119.99591 * 2 1 3 36 36 H 0.97006 * 119.99867 * 179.97438 * 7 6 4 37 37 H 1.08998 * 110.48480 * 25.35490 * 16 14 12 38 38 H 1.08996 * 110.49014 * 147.86393 * 16 14 12 39 39 H 1.09000 * 109.46716 * 209.97238 * 20 19 17 40 40 H 1.08994 * 109.47334 * 329.97619 * 20 19 17 41 41 H 1.09002 * 109.47597 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47355 * 300.00186 * 21 20 19 43 43 H 1.09011 * 109.47196 * 59.99622 * 21 20 19 44 44 H 1.08004 * 119.99927 * 359.97438 * 25 24 22 45 45 H 1.07991 * 119.99879 * 180.23285 * 26 25 24 46 46 H 1.08002 * 119.99653 * 179.83819 * 27 26 25 47 47 H 1.09008 * 109.47065 * 269.98269 * 29 28 27 48 48 H 1.08998 * 109.47283 * 29.97766 * 29 28 27 49 49 H 1.08994 * 109.47216 * 149.98149 * 29 28 27 50 50 H 1.07991 * 120.00209 * 359.97438 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3783 1.9811 -1.1791 5 1 2.8768 2.9390 -1.1673 6 6 2.1019 1.3564 -2.3891 7 7 1.2217 0.3819 -2.4394 8 14 2.9815 1.9017 -3.9441 9 1 4.4457 1.7217 -3.7736 10 1 2.5120 1.0838 -5.0912 11 1 2.6858 3.3336 -4.2038 12 6 2.1137 2.0623 1.1592 13 8 1.8894 1.5026 2.2115 14 6 2.4990 3.5191 1.1477 15 1 2.0833 4.0235 0.2753 16 6 4.0352 3.6857 1.2035 17 6 4.3388 3.8365 2.6778 18 8 5.4368 3.7113 3.1774 19 7 3.2142 4.1287 3.3537 20 6 3.1501 4.3316 4.8032 21 6 3.3824 5.8099 5.1220 22 6 2.0587 4.2178 2.4531 23 1 1.2020 3.7019 2.8866 24 6 1.7180 5.6607 2.1832 25 6 2.7260 6.6011 2.0783 26 6 2.4137 7.9238 1.8269 27 6 1.0928 8.3079 1.6882 28 6 0.0848 7.3687 1.7982 29 6 -1.3549 7.7874 1.6477 30 6 0.3974 6.0449 2.0460 31 1 -0.3634 0.4036 0.9451 32 1 -0.3634 0.6167 -0.8221 33 1 -0.3633 -1.0203 -0.1231 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 1.0285 -0.0540 -3.2842 37 1 4.5297 2.8018 0.8007 38 1 4.3426 4.5764 0.6556 39 1 2.1683 4.0310 5.1691 40 1 3.9186 3.7302 5.2886 41 1 3.3343 5.9611 6.2004 42 1 4.3641 6.1106 4.7560 43 1 2.6138 6.4115 4.6364 44 1 3.7577 6.3017 2.1903 45 1 3.2013 8.6577 1.7412 46 1 0.8487 9.3420 1.4944 47 1 -1.7565 8.0648 2.6224 48 1 -1.4163 8.6414 0.9732 49 1 -1.9334 6.9591 1.2388 50 1 -0.3901 5.3110 2.1319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888556125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:49 Heat of formation + Delta-G solvation = -46.090882 kcal Electronic energy + Delta-G solvation = -32034.941140 eV Core-core repulsion = 28026.833099 eV Total energy + Delta-G solvation = -4008.108041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.33453 -40.21224 -39.89782 -37.64983 -36.81534 -34.96245 -33.51913 -33.42988 -32.34120 -31.82105 -30.35006 -28.23310 -27.72337 -26.75749 -25.44305 -24.10629 -23.30080 -22.71654 -21.69644 -20.93770 -20.20000 -19.03562 -18.26712 -17.69500 -17.32799 -16.78276 -16.56904 -16.21728 -16.01747 -15.86605 -15.57197 -15.38131 -15.08358 -14.81504 -14.52377 -14.44164 -14.36614 -14.13217 -13.94016 -13.70699 -13.60474 -13.39253 -13.19378 -13.09235 -12.99407 -12.85494 -12.79716 -12.67761 -12.48866 -12.44232 -12.19687 -12.06381 -11.96791 -11.91607 -11.84506 -11.68155 -10.91496 -10.81040 -10.31641 -9.84584 -9.73351 -9.68023 -9.42073 -8.22027 -5.82434 0.40157 0.51572 1.43881 1.48400 1.53355 1.60249 1.92322 2.03238 2.30965 2.75531 2.94757 3.14269 3.34231 3.57170 3.69546 3.88472 3.99296 4.08984 4.09050 4.15453 4.25882 4.30852 4.44138 4.47244 4.49098 4.54628 4.62568 4.65894 4.76022 4.77493 4.84105 4.88155 4.89569 4.90347 4.92726 4.94312 5.02754 5.13166 5.16689 5.25639 5.34636 5.41804 5.47618 5.52606 5.61178 5.72474 5.74997 5.77253 5.86853 6.05338 6.14297 6.50814 7.08405 7.14918 7.61440 8.01533 8.73701 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009757 B = 0.004398 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.073229 B = 6364.674609 C = 7287.535242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.126 3.874 3 N -0.442 5.442 4 C -0.351 4.351 5 H 0.113 0.887 6 C -0.001 4.001 7 N -0.879 5.879 8 Si 0.983 3.017 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.263 1.263 12 C 0.445 3.555 13 O -0.635 6.635 14 C -0.084 4.084 15 H 0.120 0.880 16 C -0.135 4.135 17 C 0.519 3.481 18 O -0.577 6.577 19 N -0.593 5.593 20 C 0.118 3.882 21 C -0.154 4.154 22 C 0.200 3.800 23 H 0.087 0.913 24 C -0.093 4.093 25 C -0.112 4.112 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.088 4.088 29 C -0.113 4.113 30 C -0.118 4.118 31 H 0.017 0.983 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.021 0.979 36 H 0.270 0.730 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 15.939 4.945 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.003 3.997 3 N -0.158 5.158 4 C -0.478 4.478 5 H 0.131 0.869 6 C -0.203 4.203 7 N -0.517 5.517 8 Si 0.807 3.193 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.188 1.188 12 C 0.234 3.766 13 O -0.524 6.524 14 C -0.105 4.105 15 H 0.138 0.862 16 C -0.176 4.176 17 C 0.309 3.691 18 O -0.458 6.458 19 N -0.324 5.324 20 C -0.003 4.003 21 C -0.212 4.212 22 C 0.096 3.904 23 H 0.105 0.895 24 C -0.094 4.094 25 C -0.130 4.130 26 C -0.134 4.134 27 C -0.136 4.136 28 C -0.088 4.088 29 C -0.169 4.169 30 C -0.136 4.136 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.151 0.849 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.159 0.841 46 H 0.163 0.837 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.842 15.428 5.625 16.666 hybrid contribution 0.375 -0.657 -0.797 1.099 sum -2.466 14.772 4.828 15.735 Atomic orbital electron populations 1.21638 0.95841 1.00854 0.98889 1.21387 0.95066 0.83464 0.99767 1.44002 1.54274 1.11498 1.06001 1.20044 1.37917 1.06875 0.82958 0.86919 1.25983 0.95910 0.96701 1.01740 1.70192 1.29425 1.24655 1.27449 0.85131 0.78505 0.78678 0.76985 1.19856 1.21037 1.18756 1.20209 0.83809 0.89049 0.83510 1.90511 1.58847 1.71141 1.31941 1.21950 0.95934 0.93560 0.99074 0.86163 1.22271 0.95404 1.05827 0.94075 1.21014 0.83581 0.74390 0.90156 1.90633 1.25456 1.54060 1.75649 1.48224 1.08243 1.68058 1.07878 1.21475 1.02955 0.98044 0.77864 1.22093 1.01633 0.94666 1.02774 1.20212 0.89088 0.92407 0.88734 0.89478 1.19855 0.94304 0.93645 1.01613 1.20891 0.98248 0.93604 1.00268 1.21330 0.97391 0.95490 0.99207 1.21333 0.92089 1.00188 1.00016 1.20149 0.97383 0.92697 0.98605 1.20831 0.90708 1.02381 1.03027 1.20978 0.95157 0.96566 1.00912 0.96413 0.92149 0.92685 0.88173 0.96109 0.91939 0.89140 0.84862 0.89417 0.91455 0.89564 0.93598 0.91861 0.87486 0.84130 0.83657 0.90148 0.90134 0.91658 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.18 9.54 71.98 0.69 -4.49 16 2 C 0.13 6.18 5.28 86.38 0.46 6.63 16 3 N -0.44 -21.51 2.64 -635.54 -1.68 -23.19 16 4 C -0.35 -16.45 9.11 84.04 0.77 -15.68 16 5 H 0.11 4.85 6.06 -2.91 -0.02 4.83 16 6 C 0.00 -0.04 5.11 84.93 0.43 0.40 16 7 N -0.88 -42.21 8.44 21.66 0.18 -42.03 16 8 Si 0.98 37.00 29.59 68.60 2.03 39.03 16 9 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 10 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 12 C 0.44 20.77 6.66 87.66 0.58 21.36 16 13 O -0.63 -33.06 15.59 -3.04 -0.05 -33.11 16 14 C -0.08 -3.10 2.00 -10.48 -0.02 -3.12 16 15 H 0.12 4.32 6.72 -2.38 -0.02 4.30 16 16 C -0.14 -4.78 5.61 30.59 0.17 -4.61 16 17 C 0.52 19.82 6.90 87.90 0.61 20.42 16 18 O -0.58 -25.33 17.59 -3.01 -0.05 -25.38 16 19 N -0.59 -19.86 2.01 -798.33 -1.61 -21.46 16 20 C 0.12 3.34 6.64 86.38 0.57 3.91 16 21 C -0.15 -3.48 9.62 71.98 0.69 -2.79 16 22 C 0.20 6.55 2.54 44.69 0.11 6.67 16 23 H 0.09 3.14 7.34 -2.39 -0.02 3.12 16 24 C -0.09 -2.51 4.36 -19.87 -0.09 -2.59 16 25 C -0.11 -2.74 7.35 22.27 0.16 -2.57 16 26 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 27 C -0.12 -2.15 9.70 22.27 0.22 -1.93 16 28 C -0.09 -1.78 5.88 -19.87 -0.12 -1.90 16 29 C -0.11 -1.69 10.01 71.24 0.71 -0.97 16 30 C -0.12 -2.90 9.34 22.27 0.21 -2.69 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 2.91 6.86 -2.39 -0.02 2.89 16 33 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.10 5.09 5.56 -2.39 -0.01 5.08 16 35 H 0.02 1.04 7.56 -2.38 -0.02 1.02 16 36 H 0.27 12.40 8.31 -92.70 -0.77 11.63 16 37 H 0.09 3.54 7.90 -2.39 -0.02 3.52 16 38 H 0.13 3.84 8.08 -2.39 -0.02 3.82 16 39 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 2.06 7.93 -2.39 -0.02 2.04 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.42 6.45 -2.38 -0.02 1.40 16 44 H 0.11 2.81 6.42 -2.91 -0.02 2.79 16 45 H 0.14 2.14 8.06 -2.92 -0.02 2.12 16 46 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 47 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 49 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 50 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -62.60 397.27 6.15 -56.46 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.93 Total: 35.73 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.38 Total: 13.95 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -3.10 Total: -86.68 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -0.10 Total: -58.49 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -62.60 6.15 -56.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.365 kcal (2) G-P(sol) polarization free energy of solvation -62.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds