Wall clock time and date at job start Wed Apr 1 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46507 * 109.46655 * 2 1 4 4 C 1.46500 * 119.99751 * 263.83896 * 3 2 1 5 5 C 1.50695 * 109.47322 * 270.00068 * 4 3 2 6 6 H 1.07994 * 119.99650 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99959 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00279 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47117 * 89.99831 * 9 7 5 11 11 H 1.48497 * 109.47386 * 210.00326 * 9 7 5 12 12 H 1.48506 * 109.47248 * 330.00401 * 9 7 5 13 13 C 1.34772 * 120.00043 * 83.84032 * 3 2 1 14 14 O 1.21277 * 120.00075 * 185.48036 * 13 3 2 15 15 C 1.50702 * 120.00110 * 5.48041 * 13 3 2 16 16 H 1.09000 * 109.46899 * 337.66808 * 15 13 3 17 17 C 1.53000 * 109.47060 * 97.66640 * 15 13 3 18 18 C 1.53000 * 109.46973 * 182.72703 * 17 15 13 19 19 C 1.53003 * 109.47425 * 302.72924 * 17 15 13 20 20 N 1.46501 * 109.47267 * 217.66709 * 15 13 3 21 21 C 1.46737 * 125.61958 * 119.99632 * 20 15 13 22 22 C 1.50829 * 106.24896 * 180.02562 * 21 20 15 23 23 C 1.37571 * 133.24231 * 180.02562 * 22 21 20 24 24 C 1.38472 * 119.96026 * 179.97438 * 23 22 21 25 25 C 1.38380 * 120.18526 * 359.97438 * 24 23 22 26 26 C 1.37941 * 120.32329 * 0.02562 * 25 24 23 27 27 C 1.39621 * 119.82541 * 359.97438 * 26 25 24 28 28 C 1.34416 * 125.62295 * 300.00547 * 20 15 13 29 29 O 1.21555 * 124.85857 * 0.02562 * 28 20 15 30 30 H 1.09008 * 109.46674 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47518 * 299.99966 * 1 2 3 32 32 H 1.09004 * 109.47199 * 60.00252 * 1 2 3 33 33 H 1.09003 * 109.47167 * 240.00388 * 2 1 3 34 34 H 1.08994 * 109.47099 * 119.99855 * 2 1 3 35 35 H 1.09000 * 109.47331 * 30.00889 * 4 3 2 36 36 H 1.09006 * 109.46912 * 150.00070 * 4 3 2 37 37 H 0.96998 * 120.00325 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.47114 * 62.73046 * 17 15 13 39 39 H 1.09001 * 109.47376 * 60.00467 * 18 17 15 40 40 H 1.09006 * 109.47121 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47082 * 299.99953 * 18 17 15 42 42 H 1.08991 * 109.46913 * 64.26469 * 19 17 15 43 43 H 1.09000 * 109.46925 * 184.26942 * 19 17 15 44 44 H 1.09006 * 109.46549 * 304.27058 * 19 17 15 45 45 H 1.08997 * 110.09438 * 60.80816 * 21 20 15 46 46 H 1.08990 * 110.10073 * 299.19859 * 21 20 15 47 47 H 1.08008 * 120.02024 * 359.97438 * 23 22 21 48 48 H 1.08004 * 119.90496 * 180.27490 * 24 23 22 49 49 H 1.07998 * 119.83787 * 180.02562 * 25 24 23 50 50 H 1.07997 * 120.08355 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3908 2.0265 -1.2614 5 6 3.8503 1.7770 -1.5415 6 1 4.4412 1.1956 -0.8494 7 6 4.4312 2.2910 -2.6814 8 7 3.7117 2.9994 -3.5241 9 14 6.2405 1.9823 -3.0283 10 1 6.3872 0.7323 -3.8165 11 1 6.7983 3.1222 -3.7995 12 1 6.9746 1.8469 -1.7445 13 6 2.1248 2.0584 1.1604 14 8 2.4333 3.2312 1.1520 15 6 1.8605 1.3581 2.4684 16 1 1.2368 0.4818 2.2918 17 6 3.1884 0.9220 3.0908 18 6 2.9166 0.1516 4.3845 19 6 3.9403 0.0210 2.1090 20 7 1.1704 2.2728 3.3814 21 6 -0.1548 2.0525 3.9717 22 6 -0.4384 3.2574 4.8337 23 6 -1.5032 3.6200 5.6256 24 6 -1.4745 4.8201 6.3158 25 6 -0.3770 5.6566 6.2118 26 6 0.6959 5.3025 5.4204 27 6 0.6744 4.0940 4.7215 28 6 1.6467 3.4521 3.8161 29 8 2.7239 3.9229 3.5071 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.7896 1.6143 -2.0718 36 1 2.2133 3.0995 -1.1870 37 1 4.1204 3.3614 -4.3258 38 1 3.7924 1.8020 3.3120 39 1 2.3127 -0.7284 4.1633 40 1 3.8627 -0.1588 4.8281 41 1 2.3811 0.7935 5.0839 42 1 4.2004 0.5921 1.2179 43 1 4.8499 -0.3509 2.5807 44 1 3.3060 -0.8202 1.8292 45 1 -0.1478 1.1489 4.5811 46 1 -0.9057 1.9694 3.1861 47 1 -2.3610 2.9690 5.7091 48 1 -2.3091 5.1019 6.9408 49 1 -0.3605 6.5911 6.7528 50 1 1.5503 5.9584 5.3417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906373773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:49 Heat of formation + Delta-G solvation = -22.534110 kcal Electronic energy + Delta-G solvation = -31929.727027 eV Core-core repulsion = 27922.640484 eV Total energy + Delta-G solvation = -4007.086543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27546 -39.44262 -37.80770 -36.11341 -35.27718 -35.01203 -32.74150 -31.28710 -31.11483 -30.11961 -28.15490 -26.95279 -26.77530 -26.29187 -23.45336 -23.00823 -22.40219 -21.86548 -20.62325 -19.83476 -18.17820 -17.22588 -16.61691 -16.45632 -16.26607 -16.16448 -15.61977 -15.23786 -14.68653 -14.41947 -14.32542 -14.22333 -13.71946 -13.57367 -13.43866 -13.28157 -13.13332 -13.05753 -12.70491 -12.59494 -12.46777 -12.18953 -12.09922 -12.00126 -11.88291 -11.62280 -11.23681 -11.18412 -11.06557 -10.97899 -10.84823 -10.81495 -10.58127 -10.36363 -10.04735 -9.59533 -9.50838 -9.28967 -9.11241 -8.93959 -8.39399 -8.23301 -7.58241 -6.00212 -4.04758 0.72286 1.10889 2.69369 2.96463 3.32468 3.39696 3.42558 3.51026 3.79346 3.95144 4.08540 4.39312 4.48466 4.69826 4.77155 4.90899 4.94399 4.99979 5.06909 5.18067 5.22127 5.24790 5.26900 5.32197 5.34053 5.46296 5.53700 5.57961 5.64905 5.69304 5.75302 5.82804 5.89823 5.95053 6.03692 6.09297 6.10989 6.18836 6.19738 6.21487 6.40919 6.49788 6.59344 6.63828 6.69595 7.11011 7.22299 7.50906 7.61096 7.97093 8.27870 8.43914 8.48914 8.95259 9.17063 9.60381 11.07800 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.003384 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.622555 B = 8273.066723 C = 8592.435329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.495 3.505 14 O -0.506 6.506 15 C 0.155 3.845 16 H 0.104 0.896 17 C -0.103 4.103 18 C -0.139 4.139 19 C -0.155 4.155 20 N -0.606 5.606 21 C 0.144 3.856 22 C -0.086 4.086 23 C -0.104 4.104 24 C -0.096 4.096 25 C -0.128 4.128 26 C -0.050 4.050 27 C -0.144 4.144 28 C 0.555 3.445 29 O -0.479 6.479 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.130 0.870 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.968 -6.300 20.042 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 N -0.330 5.330 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.279 3.721 14 O -0.379 6.379 15 C 0.050 3.950 16 H 0.122 0.878 17 C -0.123 4.123 18 C -0.196 4.196 19 C -0.212 4.212 20 N -0.341 5.341 21 C 0.021 3.979 22 C -0.087 4.087 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.146 4.146 26 C -0.069 4.069 27 C -0.148 4.148 28 C 0.342 3.658 29 O -0.351 6.351 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.147 0.853 48 H 0.148 0.852 49 H 0.148 0.852 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.118 -5.350 19.579 23.639 hybrid contribution 0.811 -0.204 -0.409 0.932 sum -11.307 -5.554 19.169 22.938 Atomic orbital electron populations 1.22283 0.97031 1.01393 1.02212 1.21605 0.93261 0.84752 1.03037 1.48237 1.63709 1.12837 1.08262 1.19249 0.95201 0.94408 0.78227 1.21442 0.95083 1.33496 1.06274 0.92340 1.24926 0.98133 0.94942 0.96072 1.69932 1.36165 1.35083 1.12191 0.86531 0.85145 0.77648 0.78320 1.20696 1.21143 1.19835 1.20385 0.79189 0.87678 0.84894 1.90784 1.45374 1.15458 1.86310 1.21147 0.94881 0.91125 0.87887 0.87788 1.21388 0.94978 1.00249 0.95682 1.21785 1.01610 0.99469 0.96753 1.22016 0.99793 0.99367 1.00064 1.47593 1.18317 1.20921 1.47292 1.20430 0.85407 0.96088 0.95956 1.20479 0.94852 0.96234 0.97105 1.20263 0.97441 0.97326 0.97203 1.21266 0.98135 0.93708 0.98312 1.21116 0.93638 1.00251 0.99603 1.20912 0.98443 0.94182 0.93357 1.20623 0.96902 0.96647 1.00606 1.18125 0.86294 0.80920 0.80485 1.90846 1.21852 1.65377 1.57060 0.92050 0.93416 0.91963 0.89595 0.91470 0.95147 0.93993 0.92789 0.88967 0.92765 0.92346 0.92946 0.90467 0.92237 0.92367 0.88907 0.89090 0.85301 0.85215 0.85190 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.97 37.16 0.37 -1.80 16 2 C 0.10 1.52 5.45 -4.04 -0.02 1.49 16 3 N -0.60 -12.57 2.13 -175.06 -0.37 -12.94 16 4 C 0.25 6.56 5.17 -5.20 -0.03 6.53 16 5 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.64 6.93 -52.49 -0.36 1.28 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.49 10.70 5.55 -10.99 -0.06 10.64 16 14 O -0.51 -13.76 13.63 -16.78 -0.23 -13.99 16 15 C 0.16 2.49 1.86 -69.08 -0.13 2.36 16 16 H 0.10 1.33 5.16 -51.93 -0.27 1.06 16 17 C -0.10 -1.60 2.43 -90.62 -0.22 -1.82 16 18 C -0.14 -1.60 9.06 37.16 0.34 -1.26 16 19 C -0.15 -2.35 8.02 37.16 0.30 -2.05 16 20 N -0.61 -9.34 2.19 -169.86 -0.37 -9.72 16 21 C 0.14 1.54 7.36 -5.00 -0.04 1.50 16 22 C -0.09 -0.96 6.38 -104.27 -0.66 -1.63 16 23 C -0.10 -0.88 10.03 -39.74 -0.40 -1.28 16 24 C -0.10 -0.76 10.05 -39.44 -0.40 -1.16 16 25 C -0.13 -1.18 10.02 -39.64 -0.40 -1.58 16 26 C -0.05 -0.62 10.10 -39.17 -0.40 -1.02 16 27 C -0.14 -2.10 6.26 -105.05 -0.66 -2.76 16 28 C 0.55 10.19 6.96 -12.63 -0.09 10.10 16 29 O -0.48 -11.06 14.52 -17.02 -0.25 -11.31 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.05 0.57 7.37 -51.93 -0.38 0.19 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 34 H 0.07 0.88 3.83 -51.93 -0.20 0.68 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 1.78 6.82 -51.93 -0.35 1.43 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.61 7.68 -51.93 -0.40 0.21 16 42 H 0.08 1.50 6.21 -51.93 -0.32 1.18 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.74 6.11 -51.93 -0.32 0.42 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 48 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 49 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -37.60 397.24 -10.04 -47.64 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.61 Total: 0.66 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.91 Total: 2.73 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.01 Total: -48.95 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.48 Total: -25.30 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.60 -10.04 -47.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906373773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.101 kcal (2) G-P(sol) polarization free energy of solvation -37.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds