Wall clock time and date at job start Wed Apr 1 2020 04:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46507 * 109.46655 * 2 1 4 4 C 1.46500 * 119.99751 * 263.83896 * 3 2 1 5 5 C 1.50695 * 109.47322 * 270.00068 * 4 3 2 6 6 H 1.07994 * 119.99650 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99959 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00279 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47117 * 89.99831 * 9 7 5 11 11 H 1.48497 * 109.47386 * 210.00326 * 9 7 5 12 12 H 1.48506 * 109.47248 * 330.00401 * 9 7 5 13 13 C 1.34772 * 120.00043 * 83.84032 * 3 2 1 14 14 O 1.21277 * 120.00075 * 185.48036 * 13 3 2 15 15 C 1.50702 * 120.00110 * 5.48041 * 13 3 2 16 16 H 1.09000 * 109.46899 * 337.66808 * 15 13 3 17 17 C 1.53000 * 109.47060 * 97.66640 * 15 13 3 18 18 C 1.53000 * 109.46973 * 182.72703 * 17 15 13 19 19 C 1.53003 * 109.47425 * 302.72924 * 17 15 13 20 20 N 1.46501 * 109.47267 * 217.66709 * 15 13 3 21 21 C 1.46737 * 125.61958 * 119.99632 * 20 15 13 22 22 C 1.50829 * 106.24896 * 180.02562 * 21 20 15 23 23 C 1.37571 * 133.24231 * 180.02562 * 22 21 20 24 24 C 1.38472 * 119.96026 * 179.97438 * 23 22 21 25 25 C 1.38380 * 120.18526 * 359.97438 * 24 23 22 26 26 C 1.37941 * 120.32329 * 0.02562 * 25 24 23 27 27 C 1.39621 * 119.82541 * 359.97438 * 26 25 24 28 28 C 1.34416 * 125.62295 * 300.00547 * 20 15 13 29 29 O 1.21555 * 124.85857 * 0.02562 * 28 20 15 30 30 H 1.09008 * 109.46674 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47518 * 299.99966 * 1 2 3 32 32 H 1.09004 * 109.47199 * 60.00252 * 1 2 3 33 33 H 1.09003 * 109.47167 * 240.00388 * 2 1 3 34 34 H 1.08994 * 109.47099 * 119.99855 * 2 1 3 35 35 H 1.09000 * 109.47331 * 30.00889 * 4 3 2 36 36 H 1.09006 * 109.46912 * 150.00070 * 4 3 2 37 37 H 0.96998 * 120.00325 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.47114 * 62.73046 * 17 15 13 39 39 H 1.09001 * 109.47376 * 60.00467 * 18 17 15 40 40 H 1.09006 * 109.47121 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47082 * 299.99953 * 18 17 15 42 42 H 1.08991 * 109.46913 * 64.26469 * 19 17 15 43 43 H 1.09000 * 109.46925 * 184.26942 * 19 17 15 44 44 H 1.09006 * 109.46549 * 304.27058 * 19 17 15 45 45 H 1.08997 * 110.09438 * 60.80816 * 21 20 15 46 46 H 1.08990 * 110.10073 * 299.19859 * 21 20 15 47 47 H 1.08008 * 120.02024 * 359.97438 * 23 22 21 48 48 H 1.08004 * 119.90496 * 180.27490 * 24 23 22 49 49 H 1.07998 * 119.83787 * 180.02562 * 25 24 23 50 50 H 1.07997 * 120.08355 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3908 2.0265 -1.2614 5 6 3.8503 1.7770 -1.5415 6 1 4.4412 1.1956 -0.8494 7 6 4.4312 2.2910 -2.6814 8 7 3.7117 2.9994 -3.5241 9 14 6.2405 1.9823 -3.0283 10 1 6.3872 0.7323 -3.8165 11 1 6.7983 3.1222 -3.7995 12 1 6.9746 1.8469 -1.7445 13 6 2.1248 2.0584 1.1604 14 8 2.4333 3.2312 1.1520 15 6 1.8605 1.3581 2.4684 16 1 1.2368 0.4818 2.2918 17 6 3.1884 0.9220 3.0908 18 6 2.9166 0.1516 4.3845 19 6 3.9403 0.0210 2.1090 20 7 1.1704 2.2728 3.3814 21 6 -0.1548 2.0525 3.9717 22 6 -0.4384 3.2574 4.8337 23 6 -1.5032 3.6200 5.6256 24 6 -1.4745 4.8201 6.3158 25 6 -0.3770 5.6566 6.2118 26 6 0.6959 5.3025 5.4204 27 6 0.6744 4.0940 4.7215 28 6 1.6467 3.4521 3.8161 29 8 2.7239 3.9229 3.5071 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.7896 1.6143 -2.0718 36 1 2.2133 3.0995 -1.1870 37 1 4.1204 3.3614 -4.3258 38 1 3.7924 1.8020 3.3120 39 1 2.3127 -0.7284 4.1633 40 1 3.8627 -0.1588 4.8281 41 1 2.3811 0.7935 5.0839 42 1 4.2004 0.5921 1.2179 43 1 4.8499 -0.3509 2.5807 44 1 3.3060 -0.8202 1.8292 45 1 -0.1478 1.1489 4.5811 46 1 -0.9057 1.9694 3.1861 47 1 -2.3610 2.9690 5.7091 48 1 -2.3091 5.1019 6.9408 49 1 -0.3605 6.5911 6.7528 50 1 1.5503 5.9584 5.3417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906373773.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:48 Heat of formation + Delta-G solvation = -46.156689 kcal Electronic energy + Delta-G solvation = -31930.751379 eV Core-core repulsion = 27922.640484 eV Total energy + Delta-G solvation = -4008.110895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.41427 -40.84132 -38.97811 -37.48727 -36.98235 -36.17419 -34.87230 -32.24582 -31.99992 -31.63549 -29.69069 -28.15716 -27.98685 -27.57267 -25.11486 -24.36536 -23.65275 -22.72799 -21.76346 -21.15304 -19.60975 -18.72664 -18.46749 -17.84030 -17.51854 -17.24832 -16.81713 -16.68109 -16.22868 -15.90129 -15.53523 -15.26351 -14.92929 -14.82364 -14.72118 -14.56359 -14.31454 -14.15547 -14.02522 -13.87865 -13.78061 -13.48628 -13.36644 -13.26689 -13.10299 -13.03338 -12.74161 -12.67958 -12.51986 -12.31805 -12.19022 -12.09092 -12.01393 -11.95375 -11.72403 -11.60481 -10.94568 -10.67570 -10.61144 -10.02692 -9.86052 -9.54263 -9.40550 -8.24693 -6.39060 -0.15907 0.35763 1.30823 1.35379 1.44812 1.46535 1.87771 1.93650 2.33471 2.45396 2.86734 3.04519 3.14161 3.42545 3.59656 3.73324 3.76673 3.94134 4.06931 4.12212 4.18882 4.24784 4.34691 4.39843 4.46084 4.49844 4.52259 4.55941 4.63073 4.75168 4.78733 4.88068 4.89420 4.94769 4.97216 5.02139 5.04721 5.14079 5.18451 5.20923 5.33000 5.35933 5.39117 5.41415 5.47041 5.59034 5.62941 5.85788 5.93034 6.03945 6.05191 6.69006 6.78007 7.18949 7.27648 7.51245 8.82402 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.003384 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.622555 B = 8273.066723 C = 8592.435329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.088 3.912 3 N -0.598 5.598 4 C 0.266 3.734 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.256 1.256 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.484 3.516 14 O -0.577 6.577 15 C 0.168 3.832 16 H 0.151 0.849 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.149 4.149 20 N -0.606 5.606 21 C 0.137 3.863 22 C -0.081 4.081 23 C -0.095 4.095 24 C -0.080 4.080 25 C -0.127 4.127 26 C -0.075 4.075 27 C -0.192 4.192 28 C 0.536 3.464 29 O -0.555 6.555 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.024 0.976 36 H -0.016 1.016 37 H 0.266 0.734 38 H 0.037 0.963 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.139 0.861 46 H 0.112 0.888 47 H 0.173 0.827 48 H 0.173 0.827 49 H 0.155 0.845 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 -10.178 22.921 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.034 4.034 3 N -0.330 5.330 4 C 0.145 3.855 5 C -0.576 4.576 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.789 3.211 10 H -0.181 1.181 11 H -0.209 1.209 12 H -0.201 1.201 13 C 0.271 3.729 14 O -0.456 6.456 15 C 0.062 3.938 16 H 0.168 0.832 17 C -0.122 4.122 18 C -0.184 4.184 19 C -0.207 4.207 20 N -0.339 5.339 21 C 0.017 3.983 22 C -0.082 4.082 23 C -0.113 4.113 24 C -0.098 4.098 25 C -0.145 4.145 26 C -0.095 4.095 27 C -0.195 4.195 28 C 0.326 3.674 29 O -0.433 6.433 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.042 0.958 36 H 0.002 0.998 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.157 0.843 46 H 0.130 0.870 47 H 0.190 0.810 48 H 0.190 0.810 49 H 0.173 0.827 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.464 -9.318 22.479 28.832 hybrid contribution 1.741 1.075 -1.265 2.406 sum -13.723 -8.243 21.213 26.576 Atomic orbital electron populations 1.22237 0.94116 1.04055 1.01729 1.22007 0.95607 0.81391 1.04360 1.48239 1.63367 1.14963 1.06433 1.18639 0.94565 0.91561 0.80777 1.21725 0.96108 1.33485 1.06301 0.92569 1.25867 1.02988 0.94553 0.95886 1.70061 1.38221 1.35958 1.12722 0.85455 0.79083 0.78442 0.78084 1.18105 1.20874 1.20145 1.21529 0.77516 0.87092 0.86757 1.90757 1.48426 1.18918 1.87452 1.21106 0.96415 0.91556 0.84714 0.83161 1.21362 0.93875 0.98908 0.98028 1.21715 1.02819 0.99998 0.93871 1.21972 1.01346 0.99489 0.97880 1.47760 1.19992 1.19916 1.46268 1.20886 0.82930 0.97610 0.96914 1.20721 0.94389 0.95552 0.97515 1.20772 0.97351 0.97836 0.95294 1.21833 0.98147 0.92654 0.97170 1.21434 0.92884 1.01573 0.98595 1.21022 0.99519 0.93928 0.94984 1.20522 0.97845 0.98726 1.02430 1.18993 0.86072 0.81755 0.80585 1.90785 1.25113 1.67353 1.60016 0.87645 0.92125 0.94352 0.90319 0.88078 0.95812 0.99758 0.92514 0.94395 0.88821 0.91594 0.93157 0.95671 0.90712 0.88841 0.84339 0.87048 0.80983 0.80981 0.82695 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.97 71.98 0.72 -2.93 16 2 C 0.09 2.61 5.45 86.38 0.47 3.08 16 3 N -0.60 -26.35 2.13 -826.14 -1.76 -28.11 16 4 C 0.27 15.15 5.17 85.63 0.44 15.60 16 5 C -0.54 -32.36 9.39 25.60 0.24 -32.12 16 6 H 0.06 3.33 6.93 -2.91 -0.02 3.31 16 7 C 0.01 0.34 5.46 84.65 0.46 0.81 16 8 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 9 Si 0.97 47.20 29.54 68.60 2.03 49.23 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 13 C 0.48 22.25 5.55 87.66 0.49 22.74 16 14 O -0.58 -34.79 13.63 18.34 0.25 -34.54 16 15 C 0.17 5.32 1.86 44.25 0.08 5.40 16 16 H 0.15 3.24 5.16 -2.39 -0.01 3.23 16 17 C -0.10 -3.17 2.43 -10.79 -0.03 -3.19 16 18 C -0.13 -2.55 9.06 71.98 0.65 -1.90 16 19 C -0.15 -4.45 8.02 71.98 0.58 -3.87 16 20 N -0.61 -18.67 2.19 -809.80 -1.77 -20.45 16 21 C 0.14 2.46 7.36 85.63 0.63 3.09 16 22 C -0.08 -1.61 6.38 -19.63 -0.13 -1.74 16 23 C -0.09 -1.14 10.03 22.17 0.22 -0.92 16 24 C -0.08 -0.91 10.05 22.36 0.22 -0.68 16 25 C -0.13 -2.12 10.02 22.23 0.22 -1.90 16 26 C -0.08 -2.00 10.10 22.53 0.23 -1.78 16 27 C -0.19 -5.83 6.26 -20.14 -0.13 -5.95 16 28 C 0.54 21.35 6.96 86.76 0.60 21.96 16 29 O -0.55 -29.04 14.52 17.47 0.25 -28.78 16 30 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.06 1.21 7.37 -2.39 -0.02 1.19 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 2.46 8.03 -2.39 -0.02 2.44 16 34 H 0.10 2.27 3.83 -2.39 -0.01 2.26 16 35 H 0.02 1.36 8.07 -2.39 -0.02 1.34 16 36 H -0.02 -1.07 7.35 -2.38 -0.02 -1.08 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 38 H 0.04 1.60 6.82 -2.39 -0.02 1.59 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16 42 H 0.02 1.00 6.21 -2.39 -0.01 0.98 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 44 H 0.09 2.05 6.11 -2.38 -0.01 2.03 16 45 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 48 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 49 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 50 H 0.11 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -99.26 397.24 6.21 -93.05 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.94 Total: 12.48 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 5.99 Total: 15.67 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -3.25 Total: -107.11 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: 0.50 Total: -63.33 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -99.26 6.21 -93.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906373773.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.896 kcal (2) G-P(sol) polarization free energy of solvation -99.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds