Wall clock time and date at job start Wed Apr 1 2020 03:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47321 * 2 1 4 4 C 1.45755 * 117.94535 * 89.99937 * 3 2 1 5 5 C 1.52921 * 110.48306 * 199.07538 * 4 3 2 6 6 C 1.53344 * 108.67499 * 309.24316 * 5 4 3 7 7 C 1.53065 * 108.42355 * 67.53476 * 6 5 4 8 8 H 1.09001 * 109.39900 * 71.14353 * 7 6 5 9 9 N 1.46500 * 109.40322 * 190.97014 * 7 6 5 10 10 C 1.34774 * 120.00137 * 205.00255 * 9 7 6 11 11 O 1.21273 * 120.00178 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99885 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47041 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46732 * 55.00027 * 13 12 10 15 15 C 1.50704 * 109.47143 * 294.99929 * 13 12 10 16 16 H 1.08000 * 119.99715 * 119.77944 * 15 13 12 17 17 C 1.37876 * 119.99823 * 300.05359 * 15 13 12 18 18 N 1.31515 * 120.00112 * 7.41947 * 17 15 13 19 19 Si 1.86795 * 119.99761 * 187.41921 * 17 15 13 20 20 H 1.48504 * 109.47189 * 60.00128 * 19 17 15 21 21 H 1.48499 * 109.47177 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47244 * 299.99794 * 19 17 15 23 23 C 1.50699 * 109.47065 * 174.99809 * 13 12 10 24 24 C 1.38235 * 120.00182 * 209.61804 * 23 13 12 25 25 C 1.38232 * 119.99978 * 179.74556 * 24 23 13 26 26 C 1.38233 * 119.99999 * 0.53136 * 25 24 23 27 27 C 1.38238 * 119.99969 * 359.74152 * 26 25 24 28 28 C 1.38234 * 120.00311 * 359.97438 * 27 26 25 29 29 C 1.33348 * 117.94819 * 269.99995 * 3 2 1 30 30 O 1.21286 * 118.24258 * 357.77162 * 29 3 2 31 31 H 1.09007 * 109.46480 * 59.99821 * 1 2 3 32 32 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47192 * 300.00488 * 1 2 3 34 34 H 1.09003 * 109.47192 * 239.99512 * 2 1 3 35 35 H 1.09003 * 109.46477 * 119.99663 * 2 1 3 36 36 H 1.08999 * 109.30364 * 78.76504 * 4 3 2 37 37 H 1.09006 * 109.30151 * 319.38043 * 4 3 2 38 38 H 1.09006 * 109.60013 * 189.49242 * 5 4 3 39 39 H 1.09001 * 109.73940 * 69.08362 * 5 4 3 40 40 H 1.09000 * 109.67490 * 307.79607 * 6 5 4 41 41 H 1.09002 * 109.70264 * 187.28764 * 6 5 4 42 42 H 0.97006 * 119.99960 * 25.00015 * 9 7 6 43 43 H 1.09000 * 109.46783 * 59.99911 * 12 10 9 44 44 H 1.08993 * 109.47072 * 299.99580 * 12 10 9 45 45 H 0.97003 * 119.99840 * 179.97438 * 18 17 15 46 46 H 1.07998 * 119.99581 * 359.97438 * 24 23 13 47 47 H 1.07996 * 119.99691 * 180.29099 * 25 24 23 48 48 H 1.07995 * 120.00285 * 179.77017 * 26 25 24 49 49 H 1.07996 * 120.00105 * 180.02562 * 27 26 25 50 50 H 1.07995 * 120.00282 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2461 2.0252 1.2876 5 6 2.2870 3.5453 1.1259 6 6 3.2669 3.8929 -0.0013 7 6 2.6791 3.3949 -1.3240 8 1 1.8276 4.0175 -1.5989 9 7 3.6999 3.4765 -2.3716 10 6 3.3323 3.5870 -3.6635 11 8 2.1565 3.6184 -3.9589 12 6 4.3825 3.6703 -4.7412 13 6 3.7033 3.7884 -6.1071 14 1 3.0191 4.6368 -6.1005 15 6 2.9343 2.5250 -6.3966 16 1 1.8667 2.5669 -6.5544 17 6 3.5929 1.3151 -6.4545 18 7 4.8612 1.2398 -6.1150 19 14 2.6836 -0.2172 -7.0153 20 1 2.1804 -0.0161 -8.3980 21 1 3.6081 -1.3790 -6.9886 22 1 1.5392 -0.4749 -6.1046 23 6 4.7493 3.9950 -7.1721 24 6 4.4411 4.7102 -8.3142 25 6 5.4022 4.9041 -9.2886 26 6 6.6683 4.3735 -9.1260 27 6 6.9748 3.6535 -7.9865 28 6 6.0155 3.4645 -7.0093 29 6 2.2268 1.9704 -1.1780 30 8 2.0412 1.3210 -2.1853 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 3.1947 1.6811 1.6998 37 1 1.4410 1.7573 1.9718 38 1 2.6228 4.0031 2.0564 39 1 1.2933 3.9155 0.8738 40 1 4.2244 3.4053 0.1814 41 1 3.4077 4.9729 -0.0458 42 1 4.6404 3.4510 -2.1354 43 1 4.9984 2.7713 -4.7186 44 1 5.0099 4.5450 -4.5703 45 1 5.3244 0.3885 -6.1554 46 1 3.4506 5.1205 -8.4434 47 1 5.1628 5.4669 -10.1787 48 1 7.4181 4.5219 -9.8890 49 1 7.9641 3.2393 -7.8593 50 1 6.2551 2.9023 -6.1189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928870831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:46 Heat of formation + Delta-G solvation = -40.582055 kcal Electronic energy + Delta-G solvation = -31270.628453 eV Core-core repulsion = 27262.759292 eV Total energy + Delta-G solvation = -4007.869160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.58225 -38.69828 -37.87913 -36.34803 -35.28703 -34.03095 -32.72356 -30.96004 -30.06828 -29.77833 -29.10105 -27.98083 -25.75808 -24.51138 -23.40336 -22.34148 -21.82039 -21.35572 -20.04067 -19.17330 -18.60891 -16.87489 -16.51650 -16.40360 -16.04567 -15.77408 -15.34414 -14.85964 -14.52717 -14.45494 -13.93623 -13.77595 -13.72072 -13.69701 -13.60491 -13.23918 -12.76091 -12.60722 -12.47599 -12.17708 -12.04061 -11.90260 -11.67190 -11.58067 -11.42782 -11.35826 -11.20300 -11.09674 -10.87705 -10.76260 -10.67016 -10.30936 -10.11556 -9.85297 -9.62668 -9.22986 -9.10486 -8.61409 -8.57805 -8.34121 -8.26928 -7.74779 -7.37703 -5.86847 -3.92089 2.53807 2.62336 2.89190 3.02872 3.46521 3.47567 3.56171 3.86802 3.92989 4.52839 4.57261 4.59049 4.67059 4.72760 5.02110 5.07860 5.13334 5.21459 5.29196 5.38300 5.39732 5.41566 5.56184 5.59998 5.69028 5.78625 5.84991 5.90556 5.96087 6.01987 6.04804 6.18343 6.20907 6.45327 6.52924 6.55980 6.69096 6.78973 6.83476 7.00151 7.19614 7.25522 7.32953 7.56005 7.61053 7.62363 7.76148 8.08303 8.15741 8.24403 8.31715 8.47928 8.52254 9.03877 9.36291 9.71560 11.09251 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.003475 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.483792 B = 8054.797197 C = 9278.048945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.613 5.613 4 C 0.116 3.884 5 C -0.132 4.132 6 C -0.129 4.129 7 C 0.142 3.858 8 H 0.111 0.889 9 N -0.734 5.734 10 C 0.531 3.469 11 O -0.513 6.513 12 C -0.137 4.137 13 C 0.089 3.911 14 H 0.036 0.964 15 C -0.469 4.469 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.028 4.028 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.074 4.074 29 C 0.491 3.509 30 O -0.503 6.503 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.395 0.605 43 H 0.135 0.865 44 H 0.049 0.951 45 H 0.259 0.741 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 4.260 16.791 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.350 5.350 4 C -0.007 4.007 5 C -0.170 4.170 6 C -0.167 4.167 7 C 0.033 3.967 8 H 0.129 0.871 9 N -0.390 5.390 10 C 0.320 3.680 11 O -0.385 6.385 12 C -0.177 4.177 13 C 0.070 3.930 14 H 0.054 0.946 15 C -0.506 4.506 16 H 0.077 0.923 17 C -0.133 4.133 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.029 4.029 24 C -0.149 4.149 25 C -0.161 4.161 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.092 4.092 29 C 0.276 3.724 30 O -0.375 6.375 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.229 0.771 43 H 0.152 0.848 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.073 3.807 15.954 16.402 hybrid contribution -0.031 -1.243 -0.162 1.254 sum 0.042 2.565 15.792 15.999 Atomic orbital electron populations 1.22090 0.96095 1.01994 1.02165 1.21403 0.94374 0.83109 1.03031 1.47500 1.67323 1.14410 1.05762 1.21327 1.01230 0.92976 0.85209 1.21829 1.00758 0.94922 0.99496 1.21940 0.99327 1.02493 0.92928 1.20560 0.94684 0.92628 0.88847 0.87147 1.46053 1.08100 1.78657 1.06155 1.21116 0.91239 0.73681 0.81987 1.90604 1.19530 1.47117 1.81277 1.21989 0.97353 1.03837 0.94487 1.17619 0.91076 0.96857 0.87424 0.94598 1.20898 0.93900 0.90201 1.45623 0.92333 1.24794 0.94813 0.98616 0.95116 1.69554 1.09529 1.25198 1.48702 0.86649 0.79914 0.82507 0.79064 1.20572 1.21565 1.20207 1.20368 0.94322 0.92032 0.96174 1.20918 0.98249 1.00980 0.94765 1.20794 0.94225 1.02318 0.98756 1.20766 0.96546 1.01808 0.98145 1.21065 0.99053 1.00632 0.95495 1.21513 0.92124 0.95393 1.00189 1.20930 0.78164 0.90401 0.82860 1.90861 1.48370 1.63101 1.35136 0.92025 0.91850 0.92965 0.89512 0.91113 0.92028 0.91022 0.89496 0.90682 0.90681 0.89947 0.77104 0.84762 0.93285 0.93027 0.87615 0.88106 0.88329 0.88105 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.23 37.16 0.38 -1.53 16 2 C 0.10 1.29 5.94 -4.04 -0.02 1.26 16 3 N -0.61 -7.91 2.81 -174.95 -0.49 -8.40 16 4 C 0.12 0.95 6.32 -4.48 -0.03 0.92 16 5 C -0.13 -0.95 6.02 -26.59 -0.16 -1.11 16 6 C -0.13 -1.19 5.51 -26.52 -0.15 -1.33 16 7 C 0.14 2.13 2.70 -69.30 -0.19 1.94 16 8 H 0.11 1.82 7.58 -51.93 -0.39 1.42 16 9 N -0.73 -12.58 4.97 -55.15 -0.27 -12.86 16 10 C 0.53 11.83 7.00 -10.98 -0.08 11.75 16 11 O -0.51 -13.48 14.18 3.69 0.05 -13.43 16 12 C -0.14 -3.05 4.18 -27.88 -0.12 -3.17 16 13 C 0.09 2.24 1.97 -92.92 -0.18 2.06 16 14 H 0.04 0.91 7.90 -51.93 -0.41 0.50 16 15 C -0.47 -13.35 7.26 -34.44 -0.25 -13.60 16 16 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 17 C 0.07 1.86 5.13 -17.82 -0.09 1.77 16 18 N -0.89 -23.98 7.89 55.43 0.44 -23.55 16 19 Si 0.89 23.25 29.54 -169.99 -5.02 18.22 16 20 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 23 C -0.03 -0.67 4.65 -104.62 -0.49 -1.16 16 24 C -0.13 -2.88 9.70 -39.58 -0.38 -3.26 16 25 C -0.14 -2.82 10.05 -39.59 -0.40 -3.22 16 26 C -0.15 -2.98 10.05 -39.58 -0.40 -3.38 16 27 C -0.14 -2.94 10.05 -39.58 -0.40 -3.34 16 28 C -0.07 -1.67 7.51 -39.58 -0.30 -1.96 16 29 C 0.49 8.49 7.19 -11.87 -0.09 8.41 16 30 O -0.50 -11.80 14.92 3.68 0.05 -11.74 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.35 7.13 -51.93 -0.37 0.98 16 35 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 40 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.40 5.59 8.58 -40.82 -0.35 5.24 16 43 H 0.14 3.23 4.68 -51.93 -0.24 2.99 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 47 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 48 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 49 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 50 H 0.14 3.34 5.08 -52.49 -0.27 3.07 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -35.22 395.74 -10.52 -45.74 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.91 Total: 8.98 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -3.33 Total: -8.93 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.33 Total: -44.81 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: 0.11 Total: -25.17 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.22 -10.52 -45.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928870831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.155 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds