Wall clock time and date at job start Wed Apr 1 2020 03:38:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 N 1.46498 * 109.47321 * 2 1
4 4 C 1.45755 * 117.94535 * 89.99937 * 3 2 1
5 5 C 1.52921 * 110.48306 * 199.07538 * 4 3 2
6 6 C 1.53344 * 108.67499 * 309.24316 * 5 4 3
7 7 C 1.53065 * 108.42355 * 67.53476 * 6 5 4
8 8 H 1.09001 * 109.39900 * 71.14353 * 7 6 5
9 9 N 1.46500 * 109.40322 * 190.97014 * 7 6 5
10 10 C 1.34774 * 120.00137 * 205.00255 * 9 7 6
11 11 O 1.21273 * 120.00178 * 359.97438 * 10 9 7
12 12 C 1.50707 * 119.99885 * 180.02562 * 10 9 7
13 13 C 1.53003 * 109.47041 * 179.97438 * 12 10 9
14 14 H 1.08998 * 109.46732 * 55.00027 * 13 12 10
15 15 C 1.50704 * 109.47143 * 294.99929 * 13 12 10
16 16 H 1.08000 * 119.99715 * 119.77944 * 15 13 12
17 17 C 1.37876 * 119.99823 * 300.05359 * 15 13 12
18 18 N 1.31515 * 120.00112 * 7.41947 * 17 15 13
19 19 Si 1.86795 * 119.99761 * 187.41921 * 17 15 13
20 20 H 1.48504 * 109.47189 * 60.00128 * 19 17 15
21 21 H 1.48499 * 109.47177 * 180.02562 * 19 17 15
22 22 H 1.48500 * 109.47244 * 299.99794 * 19 17 15
23 23 C 1.50699 * 109.47065 * 174.99809 * 13 12 10
24 24 C 1.38235 * 120.00182 * 209.61804 * 23 13 12
25 25 C 1.38232 * 119.99978 * 179.74556 * 24 23 13
26 26 C 1.38233 * 119.99999 * 0.53136 * 25 24 23
27 27 C 1.38238 * 119.99969 * 359.74152 * 26 25 24
28 28 C 1.38234 * 120.00311 * 359.97438 * 27 26 25
29 29 C 1.33348 * 117.94819 * 269.99995 * 3 2 1
30 30 O 1.21286 * 118.24258 * 357.77162 * 29 3 2
31 31 H 1.09007 * 109.46480 * 59.99821 * 1 2 3
32 32 H 1.08999 * 109.47188 * 179.97438 * 1 2 3
33 33 H 1.09003 * 109.47192 * 300.00488 * 1 2 3
34 34 H 1.09003 * 109.47192 * 239.99512 * 2 1 3
35 35 H 1.09003 * 109.46477 * 119.99663 * 2 1 3
36 36 H 1.08999 * 109.30364 * 78.76504 * 4 3 2
37 37 H 1.09006 * 109.30151 * 319.38043 * 4 3 2
38 38 H 1.09006 * 109.60013 * 189.49242 * 5 4 3
39 39 H 1.09001 * 109.73940 * 69.08362 * 5 4 3
40 40 H 1.09000 * 109.67490 * 307.79607 * 6 5 4
41 41 H 1.09002 * 109.70264 * 187.28764 * 6 5 4
42 42 H 0.97006 * 119.99960 * 25.00015 * 9 7 6
43 43 H 1.09000 * 109.46783 * 59.99911 * 12 10 9
44 44 H 1.08993 * 109.47072 * 299.99580 * 12 10 9
45 45 H 0.97003 * 119.99840 * 179.97438 * 18 17 15
46 46 H 1.07998 * 119.99581 * 359.97438 * 24 23 13
47 47 H 1.07996 * 119.99691 * 180.29099 * 25 24 23
48 48 H 1.07995 * 120.00285 * 179.77017 * 26 25 24
49 49 H 1.07996 * 120.00105 * 180.02562 * 27 26 25
50 50 H 1.07995 * 120.00282 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2461 2.0252 1.2876
5 6 2.2870 3.5453 1.1259
6 6 3.2669 3.8929 -0.0013
7 6 2.6791 3.3949 -1.3240
8 1 1.8276 4.0175 -1.5989
9 7 3.6999 3.4765 -2.3716
10 6 3.3323 3.5870 -3.6635
11 8 2.1565 3.6184 -3.9589
12 6 4.3825 3.6703 -4.7412
13 6 3.7033 3.7884 -6.1071
14 1 3.0191 4.6368 -6.1005
15 6 2.9343 2.5250 -6.3966
16 1 1.8667 2.5669 -6.5544
17 6 3.5929 1.3151 -6.4545
18 7 4.8612 1.2398 -6.1150
19 14 2.6836 -0.2172 -7.0153
20 1 2.1804 -0.0161 -8.3980
21 1 3.6081 -1.3790 -6.9886
22 1 1.5392 -0.4749 -6.1046
23 6 4.7493 3.9950 -7.1721
24 6 4.4411 4.7102 -8.3142
25 6 5.4022 4.9041 -9.2886
26 6 6.6683 4.3735 -9.1260
27 6 6.9748 3.6535 -7.9865
28 6 6.0155 3.4645 -7.0093
29 6 2.2268 1.9704 -1.1780
30 8 2.0412 1.3210 -2.1853
31 1 -0.3632 0.5139 -0.8901
32 1 -0.3633 -1.0276 -0.0005
33 1 -0.3634 0.5139 0.8900
34 1 1.8934 -0.5139 -0.8900
35 1 1.8933 -0.5138 0.8901
36 1 3.1947 1.6811 1.6998
37 1 1.4410 1.7573 1.9718
38 1 2.6228 4.0031 2.0564
39 1 1.2933 3.9155 0.8738
40 1 4.2244 3.4053 0.1814
41 1 3.4077 4.9729 -0.0458
42 1 4.6404 3.4510 -2.1354
43 1 4.9984 2.7713 -4.7186
44 1 5.0099 4.5450 -4.5703
45 1 5.3244 0.3885 -6.1554
46 1 3.4506 5.1205 -8.4434
47 1 5.1628 5.4669 -10.1787
48 1 7.4181 4.5219 -9.8890
49 1 7.9641 3.2393 -7.8593
50 1 6.2551 2.9023 -6.1189
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000928870831.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:38:45
Heat of formation + Delta-G solvation = -63.345418 kcal
Electronic energy + Delta-G solvation = -31271.615546 eV
Core-core repulsion = 27262.759292 eV
Total energy + Delta-G solvation = -4008.856254 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.81749 -40.38478 -39.51570 -37.52977 -36.62552 -35.87741 -33.99276 -32.95563
-31.44055 -31.07860 -30.45804 -29.45072 -27.62290 -25.57984 -24.72887 -23.90892
-22.98467 -22.77088 -21.69675 -20.85224 -19.73415 -18.43118 -17.90758 -17.75715
-17.57795 -17.28464 -16.91347 -16.83094 -15.82822 -15.59469 -15.47454 -15.39965
-15.15229 -14.84616 -14.72086 -14.55423 -14.44735 -14.21121 -13.79567 -13.47986
-13.44446 -13.21738 -13.15071 -13.05912 -12.86164 -12.84733 -12.72998 -12.47882
-12.21060 -12.20067 -11.99230 -11.91681 -11.79692 -11.71822 -11.10291 -11.09467
-11.00295 -10.51910 -10.29961 -9.83152 -9.67535 -9.40369 -9.11961 -7.99202
-6.09765 0.87623 0.98802 1.28241 1.32929 1.39508 1.55472 1.87725
2.27550 2.43042 2.55812 3.19057 3.35750 3.60230 3.69511 3.83962
4.01044 4.11400 4.19059 4.25307 4.33678 4.40241 4.42301 4.47914
4.52526 4.58358 4.62642 4.69959 4.80179 4.82035 4.85577 4.91444
4.98050 5.06418 5.07324 5.07684 5.14300 5.19019 5.29771 5.39114
5.52706 5.56479 5.59427 5.65459 5.68458 5.91332 5.94777 6.09881
6.37612 6.42131 6.48734 6.56912 6.77731 6.84916 7.26566 7.51935
7.68669 8.91183
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.014206 B = 0.003475 C = 0.003017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1970.483792 B = 8054.797197 C = 9278.048945
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.099 3.901
3 N -0.602 5.602
4 C 0.103 3.897
5 C -0.126 4.126
6 C -0.117 4.117
7 C 0.138 3.862
8 H 0.088 0.912
9 N -0.718 5.718
10 C 0.525 3.475
11 O -0.564 6.564
12 C -0.127 4.127
13 C 0.091 3.909
14 H 0.014 0.986
15 C -0.489 4.489
16 H 0.020 0.980
17 C 0.040 3.960
18 N -0.881 5.881
19 Si 0.922 3.078
20 H -0.275 1.275
21 H -0.273 1.273
22 H -0.302 1.302
23 C -0.052 4.052
24 C -0.151 4.151
25 C -0.139 4.139
26 C -0.147 4.147
27 C -0.146 4.146
28 C -0.086 4.086
29 C 0.483 3.517
30 O -0.582 6.582
31 H 0.017 0.983
32 H 0.078 0.922
33 H 0.080 0.920
34 H 0.043 0.957
35 H 0.115 0.885
36 H 0.087 0.913
37 H 0.099 0.901
38 H 0.130 0.870
39 H 0.067 0.933
40 H 0.091 0.909
41 H 0.102 0.898
42 H 0.412 0.588
43 H 0.122 0.878
44 H 0.078 0.922
45 H 0.260 0.740
46 H 0.103 0.897
47 H 0.134 0.866
48 H 0.138 0.862
49 H 0.128 0.872
50 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.527 4.977 19.024 19.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.024 4.024
3 N -0.336 5.336
4 C -0.017 4.017
5 C -0.164 4.164
6 C -0.155 4.155
7 C 0.029 3.971
8 H 0.106 0.894
9 N -0.373 5.373
10 C 0.315 3.685
11 O -0.441 6.441
12 C -0.167 4.167
13 C 0.072 3.928
14 H 0.032 0.968
15 C -0.527 4.527
16 H 0.038 0.962
17 C -0.159 4.159
18 N -0.520 5.520
19 Si 0.750 3.250
20 H -0.201 1.201
21 H -0.197 1.197
22 H -0.230 1.230
23 C -0.053 4.053
24 C -0.169 4.169
25 C -0.157 4.157
26 C -0.165 4.165
27 C -0.164 4.164
28 C -0.105 4.105
29 C 0.269 3.731
30 O -0.461 6.461
31 H 0.036 0.964
32 H 0.097 0.903
33 H 0.099 0.901
34 H 0.062 0.938
35 H 0.133 0.867
36 H 0.105 0.895
37 H 0.118 0.882
38 H 0.148 0.852
39 H 0.086 0.914
40 H 0.109 0.891
41 H 0.120 0.880
42 H 0.248 0.752
43 H 0.139 0.861
44 H 0.096 0.904
45 H 0.070 0.930
46 H 0.121 0.879
47 H 0.152 0.848
48 H 0.156 0.844
49 H 0.145 0.855
50 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 2.737 4.535 18.288 19.039
hybrid contribution -0.855 -1.441 -0.783 1.849
sum 1.881 3.094 17.505 17.875
Atomic orbital electron populations
1.22031 0.95475 1.02799 1.01290 1.21520 0.94921 0.82958 1.02991
1.47623 1.65093 1.14555 1.06371 1.21811 1.03626 0.93498 0.82807
1.21898 0.99943 0.94322 1.00262 1.21976 1.00133 1.03615 0.89763
1.20818 0.93932 0.91339 0.90974 0.89403 1.45772 1.09612 1.76726
1.05208 1.21166 0.90361 0.73278 0.83731 1.90579 1.21383 1.49689
1.82454 1.21799 0.97154 1.04305 0.93448 1.17496 0.91337 0.94341
0.89673 0.96777 1.20845 0.92445 0.92467 1.46946 0.96166 1.25115
0.95712 0.99553 0.95571 1.69640 1.09058 1.25172 1.48097 0.86187
0.78794 0.81665 0.78311 1.20069 1.19740 1.22953 1.20271 0.94578
0.94051 0.96400 1.21095 0.99094 1.01493 0.95220 1.21162 0.93851
1.01752 0.98935 1.21218 0.97015 0.99930 0.98290 1.21380 0.99640
1.00310 0.95110 1.21438 0.92339 0.95907 1.00810 1.21358 0.77522
0.90967 0.83206 1.90833 1.52159 1.65014 1.38080 0.96353 0.90336
0.90136 0.93785 0.86723 0.89516 0.88236 0.85223 0.91380 0.89086
0.87997 0.75188 0.86098 0.90362 0.93018 0.87901 0.84843 0.84406
0.85452 0.84991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.64 10.23 71.98 0.74 -2.91 16
2 C 0.10 2.43 5.94 86.38 0.51 2.94 16
3 N -0.60 -15.08 2.81 -826.62 -2.32 -17.41 16
4 C 0.10 1.29 6.32 86.49 0.55 1.84 16
5 C -0.13 -1.32 6.02 30.68 0.18 -1.14 16
6 C -0.12 -1.84 5.51 30.73 0.17 -1.67 16
7 C 0.14 4.24 2.70 44.10 0.12 4.35 16
8 H 0.09 3.10 7.58 -2.39 -0.02 3.08 16
9 N -0.72 -25.43 4.97 -446.79 -2.22 -27.65 16
10 C 0.53 24.89 7.00 87.66 0.61 25.51 16
11 O -0.56 -32.26 14.18 -1.22 -0.02 -32.28 16
12 C -0.13 -5.94 4.18 29.85 0.12 -5.82 16
13 C 0.09 4.82 1.97 -12.28 -0.02 4.80 16
14 H 0.01 0.77 7.90 -2.39 -0.02 0.75 16
15 C -0.49 -29.80 7.26 25.60 0.19 -29.62 16
16 H 0.02 1.34 7.83 -2.91 -0.02 1.31 16
17 C 0.04 2.35 5.13 84.65 0.43 2.79 16
18 N -0.88 -48.65 7.89 21.45 0.17 -48.49 16
19 Si 0.92 49.53 29.54 68.60 2.03 51.56 16
20 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16
21 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16
22 H -0.30 -17.44 7.11 99.48 0.71 -16.73 16
23 C -0.05 -2.54 4.65 -19.86 -0.09 -2.63 16
24 C -0.15 -6.68 9.70 22.27 0.22 -6.46 16
25 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16
26 C -0.15 -5.13 10.05 22.27 0.22 -4.91 16
27 C -0.15 -5.60 10.05 22.27 0.22 -5.38 16
28 C -0.09 -3.89 7.51 22.27 0.17 -3.72 16
29 C 0.48 17.46 7.19 87.71 0.63 18.09 16
30 O -0.58 -29.75 14.92 -1.26 -0.02 -29.77 16
31 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16
32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.04 1.47 7.13 -2.39 -0.02 1.45 16
35 H 0.11 1.80 8.01 -2.39 -0.02 1.79 16
36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
37 H 0.10 0.79 8.10 -2.38 -0.02 0.77 16
38 H 0.13 0.40 8.14 -2.38 -0.02 0.39 16
39 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16
40 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16
41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
42 H 0.41 11.55 8.58 -92.70 -0.80 10.75 16
43 H 0.12 6.05 4.68 -2.39 -0.01 6.03 16
44 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16
45 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16
46 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16
47 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16
48 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16
49 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16
50 H 0.13 6.18 5.08 -2.91 -0.01 6.17 16
Total: -1.00 -86.86 395.74 2.96 -83.90
By element:
Atomic # 1 Polarization: 28.86 SS G_CDS: 0.14 Total: 29.01 kcal
Atomic # 6 Polarization: -14.06 SS G_CDS: 5.20 Total: -8.87 kcal
Atomic # 7 Polarization: -89.17 SS G_CDS: -4.37 Total: -93.55 kcal
Atomic # 8 Polarization: -62.01 SS G_CDS: -0.04 Total: -62.05 kcal
Atomic # 14 Polarization: 49.53 SS G_CDS: 2.03 Total: 51.56 kcal
Total: -86.86 2.96 -83.90 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000928870831.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.555 kcal
(2) G-P(sol) polarization free energy of solvation -86.858 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.901 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds