Wall clock time and date at job start Wed Apr 1 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47321 * 2 1 4 4 C 1.45755 * 117.94535 * 89.99937 * 3 2 1 5 5 C 1.52921 * 110.48306 * 199.07538 * 4 3 2 6 6 C 1.53344 * 108.67499 * 309.24316 * 5 4 3 7 7 C 1.53065 * 108.42355 * 67.53476 * 6 5 4 8 8 H 1.09001 * 109.39900 * 71.14353 * 7 6 5 9 9 N 1.46500 * 109.40322 * 190.97014 * 7 6 5 10 10 C 1.34774 * 120.00137 * 205.00255 * 9 7 6 11 11 O 1.21273 * 120.00178 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99885 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47041 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.46732 * 55.00027 * 13 12 10 15 15 C 1.50704 * 109.47143 * 294.99929 * 13 12 10 16 16 H 1.08000 * 119.99715 * 119.77944 * 15 13 12 17 17 C 1.37876 * 119.99823 * 300.05359 * 15 13 12 18 18 N 1.31515 * 120.00112 * 7.41947 * 17 15 13 19 19 Si 1.86795 * 119.99761 * 187.41921 * 17 15 13 20 20 H 1.48504 * 109.47189 * 60.00128 * 19 17 15 21 21 H 1.48499 * 109.47177 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47244 * 299.99794 * 19 17 15 23 23 C 1.50699 * 109.47065 * 174.99809 * 13 12 10 24 24 C 1.38235 * 120.00182 * 209.61804 * 23 13 12 25 25 C 1.38232 * 119.99978 * 179.74556 * 24 23 13 26 26 C 1.38233 * 119.99999 * 0.53136 * 25 24 23 27 27 C 1.38238 * 119.99969 * 359.74152 * 26 25 24 28 28 C 1.38234 * 120.00311 * 359.97438 * 27 26 25 29 29 C 1.33348 * 117.94819 * 269.99995 * 3 2 1 30 30 O 1.21286 * 118.24258 * 357.77162 * 29 3 2 31 31 H 1.09007 * 109.46480 * 59.99821 * 1 2 3 32 32 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47192 * 300.00488 * 1 2 3 34 34 H 1.09003 * 109.47192 * 239.99512 * 2 1 3 35 35 H 1.09003 * 109.46477 * 119.99663 * 2 1 3 36 36 H 1.08999 * 109.30364 * 78.76504 * 4 3 2 37 37 H 1.09006 * 109.30151 * 319.38043 * 4 3 2 38 38 H 1.09006 * 109.60013 * 189.49242 * 5 4 3 39 39 H 1.09001 * 109.73940 * 69.08362 * 5 4 3 40 40 H 1.09000 * 109.67490 * 307.79607 * 6 5 4 41 41 H 1.09002 * 109.70264 * 187.28764 * 6 5 4 42 42 H 0.97006 * 119.99960 * 25.00015 * 9 7 6 43 43 H 1.09000 * 109.46783 * 59.99911 * 12 10 9 44 44 H 1.08993 * 109.47072 * 299.99580 * 12 10 9 45 45 H 0.97003 * 119.99840 * 179.97438 * 18 17 15 46 46 H 1.07998 * 119.99581 * 359.97438 * 24 23 13 47 47 H 1.07996 * 119.99691 * 180.29099 * 25 24 23 48 48 H 1.07995 * 120.00285 * 179.77017 * 26 25 24 49 49 H 1.07996 * 120.00105 * 180.02562 * 27 26 25 50 50 H 1.07995 * 120.00282 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2461 2.0252 1.2876 5 6 2.2870 3.5453 1.1259 6 6 3.2669 3.8929 -0.0013 7 6 2.6791 3.3949 -1.3240 8 1 1.8276 4.0175 -1.5989 9 7 3.6999 3.4765 -2.3716 10 6 3.3323 3.5870 -3.6635 11 8 2.1565 3.6184 -3.9589 12 6 4.3825 3.6703 -4.7412 13 6 3.7033 3.7884 -6.1071 14 1 3.0191 4.6368 -6.1005 15 6 2.9343 2.5250 -6.3966 16 1 1.8667 2.5669 -6.5544 17 6 3.5929 1.3151 -6.4545 18 7 4.8612 1.2398 -6.1150 19 14 2.6836 -0.2172 -7.0153 20 1 2.1804 -0.0161 -8.3980 21 1 3.6081 -1.3790 -6.9886 22 1 1.5392 -0.4749 -6.1046 23 6 4.7493 3.9950 -7.1721 24 6 4.4411 4.7102 -8.3142 25 6 5.4022 4.9041 -9.2886 26 6 6.6683 4.3735 -9.1260 27 6 6.9748 3.6535 -7.9865 28 6 6.0155 3.4645 -7.0093 29 6 2.2268 1.9704 -1.1780 30 8 2.0412 1.3210 -2.1853 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 3.1947 1.6811 1.6998 37 1 1.4410 1.7573 1.9718 38 1 2.6228 4.0031 2.0564 39 1 1.2933 3.9155 0.8738 40 1 4.2244 3.4053 0.1814 41 1 3.4077 4.9729 -0.0458 42 1 4.6404 3.4510 -2.1354 43 1 4.9984 2.7713 -4.7186 44 1 5.0099 4.5450 -4.5703 45 1 5.3244 0.3885 -6.1554 46 1 3.4506 5.1205 -8.4434 47 1 5.1628 5.4669 -10.1787 48 1 7.4181 4.5219 -9.8890 49 1 7.9641 3.2393 -7.8593 50 1 6.2551 2.9023 -6.1189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928870831.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:45 Heat of formation + Delta-G solvation = -63.345418 kcal Electronic energy + Delta-G solvation = -31271.615546 eV Core-core repulsion = 27262.759292 eV Total energy + Delta-G solvation = -4008.856254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.81749 -40.38478 -39.51570 -37.52977 -36.62552 -35.87741 -33.99276 -32.95563 -31.44055 -31.07860 -30.45804 -29.45072 -27.62290 -25.57984 -24.72887 -23.90892 -22.98467 -22.77088 -21.69675 -20.85224 -19.73415 -18.43118 -17.90758 -17.75715 -17.57795 -17.28464 -16.91347 -16.83094 -15.82822 -15.59469 -15.47454 -15.39965 -15.15229 -14.84616 -14.72086 -14.55423 -14.44735 -14.21121 -13.79567 -13.47986 -13.44446 -13.21738 -13.15071 -13.05912 -12.86164 -12.84733 -12.72998 -12.47882 -12.21060 -12.20067 -11.99230 -11.91681 -11.79692 -11.71822 -11.10291 -11.09467 -11.00295 -10.51910 -10.29961 -9.83152 -9.67535 -9.40369 -9.11961 -7.99202 -6.09765 0.87623 0.98802 1.28241 1.32929 1.39508 1.55472 1.87725 2.27550 2.43042 2.55812 3.19057 3.35750 3.60230 3.69511 3.83962 4.01044 4.11400 4.19059 4.25307 4.33678 4.40241 4.42301 4.47914 4.52526 4.58358 4.62642 4.69959 4.80179 4.82035 4.85577 4.91444 4.98050 5.06418 5.07324 5.07684 5.14300 5.19019 5.29771 5.39114 5.52706 5.56479 5.59427 5.65459 5.68458 5.91332 5.94777 6.09881 6.37612 6.42131 6.48734 6.56912 6.77731 6.84916 7.26566 7.51935 7.68669 8.91183 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.003475 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.483792 B = 8054.797197 C = 9278.048945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.602 5.602 4 C 0.103 3.897 5 C -0.126 4.126 6 C -0.117 4.117 7 C 0.138 3.862 8 H 0.088 0.912 9 N -0.718 5.718 10 C 0.525 3.475 11 O -0.564 6.564 12 C -0.127 4.127 13 C 0.091 3.909 14 H 0.014 0.986 15 C -0.489 4.489 16 H 0.020 0.980 17 C 0.040 3.960 18 N -0.881 5.881 19 Si 0.922 3.078 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.302 1.302 23 C -0.052 4.052 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.086 4.086 29 C 0.483 3.517 30 O -0.582 6.582 31 H 0.017 0.983 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.412 0.588 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.260 0.740 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.128 0.872 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 4.977 19.024 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.024 4.024 3 N -0.336 5.336 4 C -0.017 4.017 5 C -0.164 4.164 6 C -0.155 4.155 7 C 0.029 3.971 8 H 0.106 0.894 9 N -0.373 5.373 10 C 0.315 3.685 11 O -0.441 6.441 12 C -0.167 4.167 13 C 0.072 3.928 14 H 0.032 0.968 15 C -0.527 4.527 16 H 0.038 0.962 17 C -0.159 4.159 18 N -0.520 5.520 19 Si 0.750 3.250 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.230 1.230 23 C -0.053 4.053 24 C -0.169 4.169 25 C -0.157 4.157 26 C -0.165 4.165 27 C -0.164 4.164 28 C -0.105 4.105 29 C 0.269 3.731 30 O -0.461 6.461 31 H 0.036 0.964 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.248 0.752 43 H 0.139 0.861 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.145 0.855 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.737 4.535 18.288 19.039 hybrid contribution -0.855 -1.441 -0.783 1.849 sum 1.881 3.094 17.505 17.875 Atomic orbital electron populations 1.22031 0.95475 1.02799 1.01290 1.21520 0.94921 0.82958 1.02991 1.47623 1.65093 1.14555 1.06371 1.21811 1.03626 0.93498 0.82807 1.21898 0.99943 0.94322 1.00262 1.21976 1.00133 1.03615 0.89763 1.20818 0.93932 0.91339 0.90974 0.89403 1.45772 1.09612 1.76726 1.05208 1.21166 0.90361 0.73278 0.83731 1.90579 1.21383 1.49689 1.82454 1.21799 0.97154 1.04305 0.93448 1.17496 0.91337 0.94341 0.89673 0.96777 1.20845 0.92445 0.92467 1.46946 0.96166 1.25115 0.95712 0.99553 0.95571 1.69640 1.09058 1.25172 1.48097 0.86187 0.78794 0.81665 0.78311 1.20069 1.19740 1.22953 1.20271 0.94578 0.94051 0.96400 1.21095 0.99094 1.01493 0.95220 1.21162 0.93851 1.01752 0.98935 1.21218 0.97015 0.99930 0.98290 1.21380 0.99640 1.00310 0.95110 1.21438 0.92339 0.95907 1.00810 1.21358 0.77522 0.90967 0.83206 1.90833 1.52159 1.65014 1.38080 0.96353 0.90336 0.90136 0.93785 0.86723 0.89516 0.88236 0.85223 0.91380 0.89086 0.87997 0.75188 0.86098 0.90362 0.93018 0.87901 0.84843 0.84406 0.85452 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.23 71.98 0.74 -2.91 16 2 C 0.10 2.43 5.94 86.38 0.51 2.94 16 3 N -0.60 -15.08 2.81 -826.62 -2.32 -17.41 16 4 C 0.10 1.29 6.32 86.49 0.55 1.84 16 5 C -0.13 -1.32 6.02 30.68 0.18 -1.14 16 6 C -0.12 -1.84 5.51 30.73 0.17 -1.67 16 7 C 0.14 4.24 2.70 44.10 0.12 4.35 16 8 H 0.09 3.10 7.58 -2.39 -0.02 3.08 16 9 N -0.72 -25.43 4.97 -446.79 -2.22 -27.65 16 10 C 0.53 24.89 7.00 87.66 0.61 25.51 16 11 O -0.56 -32.26 14.18 -1.22 -0.02 -32.28 16 12 C -0.13 -5.94 4.18 29.85 0.12 -5.82 16 13 C 0.09 4.82 1.97 -12.28 -0.02 4.80 16 14 H 0.01 0.77 7.90 -2.39 -0.02 0.75 16 15 C -0.49 -29.80 7.26 25.60 0.19 -29.62 16 16 H 0.02 1.34 7.83 -2.91 -0.02 1.31 16 17 C 0.04 2.35 5.13 84.65 0.43 2.79 16 18 N -0.88 -48.65 7.89 21.45 0.17 -48.49 16 19 Si 0.92 49.53 29.54 68.60 2.03 51.56 16 20 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.30 -17.44 7.11 99.48 0.71 -16.73 16 23 C -0.05 -2.54 4.65 -19.86 -0.09 -2.63 16 24 C -0.15 -6.68 9.70 22.27 0.22 -6.46 16 25 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 26 C -0.15 -5.13 10.05 22.27 0.22 -4.91 16 27 C -0.15 -5.60 10.05 22.27 0.22 -5.38 16 28 C -0.09 -3.89 7.51 22.27 0.17 -3.72 16 29 C 0.48 17.46 7.19 87.71 0.63 18.09 16 30 O -0.58 -29.75 14.92 -1.26 -0.02 -29.77 16 31 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.47 7.13 -2.39 -0.02 1.45 16 35 H 0.11 1.80 8.01 -2.39 -0.02 1.79 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.79 8.10 -2.38 -0.02 0.77 16 38 H 0.13 0.40 8.14 -2.38 -0.02 0.39 16 39 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 40 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.41 11.55 8.58 -92.70 -0.80 10.75 16 43 H 0.12 6.05 4.68 -2.39 -0.01 6.03 16 44 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 46 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 47 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 48 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 49 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 50 H 0.13 6.18 5.08 -2.91 -0.01 6.17 16 Total: -1.00 -86.86 395.74 2.96 -83.90 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.14 Total: 29.01 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.20 Total: -8.87 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -4.37 Total: -93.55 kcal Atomic # 8 Polarization: -62.01 SS G_CDS: -0.04 Total: -62.05 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.03 Total: 51.56 kcal Total: -86.86 2.96 -83.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928870831.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.555 kcal (2) G-P(sol) polarization free energy of solvation -86.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds