Wall clock time and date at job start Wed Apr 1 2020 03:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47646 * 2 1 4 4 C 1.34782 * 119.99735 * 89.99746 * 3 2 1 5 5 O 1.21287 * 119.99750 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00230 * 0.02562 * 4 3 2 7 7 C 1.52998 * 117.49926 * 248.74710 * 6 4 3 8 8 C 1.52995 * 117.49982 * 180.08438 * 6 4 3 9 9 C 1.46497 * 120.00436 * 270.00218 * 3 2 1 10 10 C 1.53944 * 113.73141 * 38.76493 * 9 3 2 11 11 N 1.48188 * 86.09848 * 221.96119 * 10 9 3 12 12 C 1.46902 * 111.07151 * 137.52081 * 11 10 9 13 13 C 1.50700 * 109.47043 * 90.56365 * 12 11 10 14 14 C 1.38305 * 119.93192 * 269.72611 * 13 12 11 15 15 C 1.38097 * 120.06854 * 179.72763 * 14 13 12 16 16 C 1.38879 * 119.93277 * 0.52328 * 15 14 13 17 17 O 1.35749 * 120.07292 * 179.72910 * 16 15 14 18 18 C 1.34827 * 117.00353 * 174.48792 * 17 16 15 19 19 H 1.08003 * 119.99835 * 5.05563 * 18 17 16 20 20 C 1.38652 * 120.00035 * 185.05461 * 18 17 16 21 21 N 1.31554 * 120.00236 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99900 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46936 * 90.00002 * 22 20 18 24 24 H 1.48503 * 109.46909 * 209.99825 * 22 20 18 25 25 H 1.48493 * 109.47169 * 330.00178 * 22 20 18 26 26 C 1.38884 * 119.86241 * 359.74998 * 16 15 14 27 27 C 1.38098 * 119.92934 * 359.97438 * 26 16 15 28 28 C 1.47956 * 90.80334 * 24.59906 * 11 10 9 29 29 H 1.08998 * 109.47792 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46949 * 300.00369 * 1 2 3 31 31 H 1.09005 * 109.47089 * 59.99201 * 1 2 3 32 32 H 1.09005 * 109.46689 * 240.00116 * 2 1 3 33 33 H 1.08995 * 109.47000 * 120.00628 * 2 1 3 34 34 H 1.09007 * 115.54890 * 34.41678 * 6 4 3 35 35 H 1.09001 * 117.50131 * 359.97438 * 7 6 4 36 36 H 1.09000 * 117.49912 * 145.01990 * 7 6 4 37 37 H 1.09005 * 117.49778 * 214.97807 * 8 6 4 38 38 H 1.09004 * 117.49901 * 359.97438 * 8 6 4 39 39 H 1.08994 * 112.94272 * 170.32792 * 9 3 2 40 40 H 1.09003 * 113.75912 * 336.23897 * 10 9 3 41 41 H 1.08999 * 113.76247 * 107.60291 * 10 9 3 42 42 H 1.08996 * 109.47008 * 210.55841 * 12 11 10 43 43 H 1.08993 * 109.47450 * 330.56487 * 12 11 10 44 44 H 1.07997 * 119.96145 * 359.97438 * 14 13 12 45 45 H 1.08005 * 120.03506 * 180.27094 * 15 14 13 46 46 H 0.96996 * 120.00384 * 180.02562 * 21 20 18 47 47 H 1.07990 * 120.03924 * 179.97438 * 26 16 15 48 48 H 1.08002 * 119.96619 * 179.97438 * 27 26 16 49 49 H 1.09005 * 113.75987 * 221.09122 * 28 11 10 50 50 H 1.08997 * 113.76414 * 89.72069 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2430 2.0164 1.1673 5 8 2.6470 3.1601 1.1673 6 6 1.9923 1.3059 2.4723 7 6 0.8241 1.7958 3.3303 8 6 2.2644 2.0816 3.7627 9 6 2.2626 2.0718 -1.2686 10 6 1.2167 1.7610 -2.3546 11 7 2.3617 1.6828 -3.2921 12 6 2.2186 0.5421 -4.2066 13 6 1.4839 0.9817 -5.4468 14 6 0.1046 0.8938 -5.4994 15 6 -0.5719 1.3011 -6.6323 16 6 0.1348 1.7893 -7.7236 17 8 -0.5269 2.1853 -8.8408 18 6 0.2073 2.7545 -9.8178 19 1 1.2824 2.8037 -9.7264 20 6 -0.4177 3.2766 -10.9400 21 7 -1.7272 3.2171 -11.0511 22 14 0.5996 4.0659 -12.2934 23 1 0.9809 3.0345 -13.2914 24 1 -0.1990 5.1267 -12.9583 25 1 1.8256 4.6637 -11.7064 26 6 1.5202 1.8710 -7.6698 27 6 2.1906 1.4675 -6.5319 28 6 3.2787 1.3570 -2.1776 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8932 -0.5139 -0.8901 33 1 1.8932 -0.5139 0.8899 34 1 2.2041 0.2366 2.4737 35 1 0.2371 2.6323 2.9511 36 1 0.2676 1.0489 3.8965 37 1 2.6548 1.5226 4.6131 38 1 2.6252 3.1058 3.6677 39 1 2.4602 3.1362 -1.1418 40 1 0.7022 0.8110 -2.2097 41 1 0.5363 2.5877 -2.5585 42 1 3.2058 0.1709 -4.4817 43 1 1.6566 -0.2508 -3.7133 44 1 -0.4441 0.5099 -4.6521 45 1 -1.6493 1.2363 -6.6712 46 1 -2.1644 3.5820 -11.8363 47 1 2.0727 2.2498 -8.5169 48 1 3.2680 1.5305 -6.4896 49 1 4.2429 1.8618 -2.2403 50 1 3.3687 0.2888 -1.9807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949539986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:08 Heat of formation + Delta-G solvation = 13.856951 kcal Electronic energy + Delta-G solvation = -29416.002699 eV Core-core repulsion = 25410.494191 eV Total energy + Delta-G solvation = -4005.508508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.92102 -40.80597 -40.20394 -38.28555 -37.02264 -36.55446 -34.36256 -32.73795 -31.78304 -31.29800 -29.04604 -27.41315 -27.12001 -26.01911 -24.55971 -23.83892 -23.58386 -23.27093 -21.91347 -20.80802 -19.87072 -19.66515 -18.87994 -18.68229 -17.78565 -16.83235 -16.62209 -16.40651 -16.24013 -16.05290 -15.76628 -15.51554 -15.39656 -15.24363 -14.87751 -14.56417 -14.47454 -14.23260 -14.14117 -13.80475 -13.62851 -13.56302 -13.46960 -13.06250 -12.90417 -12.72206 -12.45328 -12.44432 -12.40586 -12.24678 -12.14275 -12.03877 -11.90282 -11.61846 -11.43970 -11.35884 -11.16378 -10.88212 -10.77927 -9.78169 -9.74732 -9.71674 -8.89479 -8.47601 -6.15533 0.61635 0.69195 1.33873 1.41937 1.43059 1.51445 1.84673 2.17200 2.76039 2.91710 2.99934 3.22155 3.44450 3.53051 3.54597 3.82890 3.83800 3.95316 3.97282 4.00384 4.03982 4.16268 4.19781 4.21796 4.34359 4.37918 4.41237 4.55313 4.60728 4.61018 4.73882 4.74752 4.75909 4.81392 4.86112 4.90954 4.98464 5.03628 5.08181 5.10125 5.14477 5.23112 5.25392 5.38110 5.42419 5.52575 5.60079 5.73208 5.83676 6.02793 6.05034 6.25336 6.36252 6.97287 7.12181 7.78602 8.75672 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.001823 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.017989 B =15354.188907 C =15531.276222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.097 3.903 3 N -0.593 5.593 4 C 0.535 3.465 5 O -0.591 6.591 6 C -0.196 4.196 7 C -0.141 4.141 8 C -0.156 4.156 9 C 0.117 3.883 10 C -0.002 4.002 11 N -0.492 5.492 12 C 0.085 3.915 13 C -0.149 4.149 14 C -0.057 4.057 15 C -0.205 4.205 16 C 0.112 3.888 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.245 4.245 27 C -0.055 4.055 28 C 0.002 3.998 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.146 0.854 45 H 0.112 0.888 46 H 0.272 0.728 47 H 0.115 0.885 48 H 0.134 0.866 49 H 0.089 0.911 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.731 -11.539 29.321 32.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.025 4.025 3 N -0.324 5.324 4 C 0.326 3.674 5 O -0.472 6.472 6 C -0.216 4.216 7 C -0.178 4.178 8 C -0.194 4.194 9 C 0.012 3.988 10 C -0.131 4.131 11 N -0.215 5.215 12 C -0.042 4.042 13 C -0.150 4.150 14 C -0.075 4.075 15 C -0.224 4.224 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.264 4.264 27 C -0.074 4.074 28 C -0.127 4.127 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.173 0.827 35 H 0.100 0.900 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.163 0.837 45 H 0.130 0.870 46 H 0.081 0.919 47 H 0.133 0.867 48 H 0.152 0.848 49 H 0.107 0.893 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.699 -10.383 28.662 31.702 hybrid contribution -0.173 0.194 -0.963 0.998 sum 8.526 -10.189 27.698 30.720 Atomic orbital electron populations 1.22361 0.95065 1.03644 1.02380 1.21881 0.95126 0.80437 1.05027 1.48034 1.64687 1.15244 1.04454 1.20399 0.75603 0.85521 0.85901 1.90683 1.48119 1.20327 1.88032 1.22329 1.08814 1.01592 0.88883 1.23014 0.90824 1.03321 1.00643 1.23027 0.99134 1.01145 0.96062 1.22849 0.96241 0.97930 0.81764 1.24665 0.94896 1.03115 0.90418 1.68545 1.05958 1.37201 1.09783 1.21380 1.00369 0.91655 0.90799 1.19553 0.93228 1.05991 0.96224 1.20839 0.93884 0.96954 0.95836 1.20445 0.99587 1.08912 0.93497 1.19951 0.92235 0.93999 0.87671 1.83933 1.37320 1.69462 1.23337 1.21797 0.92033 1.37669 0.97418 0.88311 1.26579 0.97488 0.97385 1.00635 1.70178 1.10151 1.45369 1.30198 0.84597 0.77434 0.77944 0.76300 1.18618 1.19540 1.17896 1.21245 0.93533 1.10413 1.01220 1.20911 0.99817 0.95126 0.91544 1.24410 0.97911 1.01095 0.89313 0.89334 0.92348 0.92952 0.89220 0.87502 0.82705 0.90033 0.84822 0.85386 0.90138 0.88650 0.87893 0.90723 0.89222 0.91037 0.83655 0.87004 0.91858 0.86726 0.84838 0.89266 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.92 71.98 0.71 -0.60 16 2 C 0.10 0.71 5.11 86.38 0.44 1.15 16 3 N -0.59 -9.06 2.70 -802.06 -2.16 -11.22 16 4 C 0.54 10.45 7.46 87.65 0.65 11.11 16 5 O -0.59 -17.44 15.73 -3.05 -0.05 -17.49 16 6 C -0.20 -2.19 5.28 -11.54 -0.06 -2.26 16 7 C -0.14 -1.33 10.24 30.62 0.31 -1.01 16 8 C -0.16 -1.79 10.05 30.62 0.31 -1.48 16 9 C 0.12 2.27 4.39 46.56 0.20 2.47 16 10 C 0.00 -0.04 6.87 86.37 0.59 0.56 16 11 N -0.49 -10.71 6.14 -912.20 -5.60 -16.31 16 12 C 0.09 1.78 4.92 85.56 0.42 2.20 16 13 C -0.15 -4.53 5.44 -19.83 -0.11 -4.64 16 14 C -0.06 -1.85 9.69 22.25 0.22 -1.63 16 15 C -0.21 -8.79 9.99 22.39 0.22 -8.57 16 16 C 0.11 5.69 6.65 22.58 0.15 5.84 16 17 O -0.23 -14.39 9.76 -22.70 -0.22 -14.62 16 18 C -0.41 -24.64 9.49 67.92 0.64 -23.99 16 19 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 20 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 21 N -0.92 -57.38 13.67 21.61 0.30 -57.09 16 22 Si 1.02 43.82 29.55 68.60 2.03 45.84 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C -0.24 -11.00 9.17 22.39 0.21 -10.80 16 27 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 28 C 0.00 0.03 7.47 86.41 0.65 0.68 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.55 5.74 -2.38 -0.01 0.54 16 32 H 0.09 0.50 6.35 -2.38 -0.02 0.48 16 33 H 0.11 0.30 6.00 -2.39 -0.01 0.29 16 34 H 0.16 0.73 6.44 -2.38 -0.02 0.71 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.08 1.38 7.67 -2.39 -0.02 1.37 16 39 H 0.10 2.50 7.22 -2.39 -0.02 2.48 16 40 H 0.10 1.49 4.32 -2.39 -0.01 1.48 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.66 8.02 -2.39 -0.02 1.64 16 43 H 0.07 1.13 7.33 -2.39 -0.02 1.11 16 44 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 45 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 46 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.11 5.29 5.64 -2.92 -0.02 5.27 16 48 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 49 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 50 H 0.10 1.12 6.62 -2.39 -0.02 1.11 16 Total: -1.00 -80.71 402.23 1.49 -79.23 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.96 Total: 25.28 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 6.25 Total: -33.62 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -7.47 Total: -84.62 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.27 Total: -32.11 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -80.71 1.49 -79.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949539986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.082 kcal (2) G-P(sol) polarization free energy of solvation -80.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds