Wall clock time and date at job start Wed Apr 1 2020 03:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47310 * 2 1 4 4 C 1.34778 * 119.99983 * 275.52468 * 3 2 1 5 5 O 1.21285 * 119.99488 * 184.48505 * 4 3 2 6 6 C 1.50699 * 120.00003 * 4.48357 * 4 3 2 7 7 H 1.08994 * 110.55073 * 45.64522 * 6 4 3 8 8 C 1.54994 * 110.61585 * 282.76487 * 6 4 3 9 9 C 1.54987 * 102.01233 * 204.59514 * 8 6 4 10 10 C 1.54105 * 104.24917 * 20.67253 * 9 8 6 11 11 H 1.09000 * 109.87286 * 242.73975 * 10 9 8 12 12 C 1.50697 * 109.87991 * 121.58939 * 10 9 8 13 13 C 1.38242 * 119.99788 * 280.44085 * 12 10 9 14 14 C 1.38228 * 119.99708 * 179.74612 * 13 12 10 15 15 C 1.38238 * 120.00204 * 0.54839 * 14 13 12 16 16 C 1.38237 * 120.00084 * 359.69831 * 15 14 13 17 17 C 1.38231 * 120.00505 * 100.71185 * 12 10 9 18 18 O 1.43744 * 107.29589 * 2.16241 * 10 9 8 19 19 C 1.46495 * 119.99718 * 95.51869 * 3 2 1 20 20 C 1.53941 * 113.74572 * 318.66804 * 19 3 2 21 21 N 1.47811 * 86.03843 * 90.88219 * 20 19 3 22 22 C 1.36935 * 134.45497 * 204.64816 * 21 20 19 23 23 H 1.08000 * 120.00442 * 179.86690 * 22 21 20 24 24 C 1.38811 * 120.00142 * 359.86451 * 22 21 20 25 25 N 1.31617 * 120.00218 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00325 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47290 * 59.99798 * 26 24 22 28 28 H 1.48494 * 109.47366 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46797 * 299.99779 * 26 24 22 30 30 C 1.47579 * 91.05179 * 24.55030 * 21 20 19 31 31 H 1.09004 * 109.46823 * 184.98480 * 1 2 3 32 32 H 1.08997 * 109.46871 * 304.98475 * 1 2 3 33 33 H 1.08997 * 109.46994 * 64.98248 * 1 2 3 34 34 H 1.09005 * 109.47300 * 240.00158 * 2 1 3 35 35 H 1.09003 * 109.47363 * 120.00579 * 2 1 3 36 36 H 1.08999 * 110.91268 * 322.67637 * 8 6 4 37 37 H 1.09003 * 110.90523 * 86.28088 * 8 6 4 38 38 H 1.09000 * 110.34538 * 262.03101 * 9 8 6 39 39 H 1.09000 * 110.68418 * 139.47919 * 9 8 6 40 40 H 1.08001 * 119.99728 * 359.97438 * 13 12 10 41 41 H 1.08002 * 120.00337 * 180.27590 * 14 13 12 42 42 H 1.08005 * 120.00198 * 179.72647 * 15 14 13 43 43 H 1.07997 * 120.00337 * 179.97438 * 16 15 14 44 44 H 1.08007 * 119.99630 * 0.02562 * 17 12 10 45 45 H 1.09000 * 112.94369 * 187.06775 * 19 3 2 46 46 H 1.09001 * 113.77403 * 205.14829 * 20 19 3 47 47 H 1.09000 * 113.76858 * 336.54276 * 20 19 3 48 48 H 0.96998 * 120.00592 * 180.02562 * 25 24 22 49 49 H 1.08994 * 113.76998 * 221.15260 * 30 21 20 50 50 H 1.08994 * 113.86872 * 89.76687 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1371 2.0540 -1.1618 5 8 2.6174 3.1676 -1.1712 6 6 1.6730 1.4225 -2.4490 7 1 0.6922 0.9654 -2.3191 8 6 2.7021 0.3750 -2.9450 9 6 2.4172 0.3391 -4.4681 10 6 1.6983 1.6725 -4.7511 11 1 0.6887 1.4794 -5.1136 12 6 2.4707 2.4639 -5.7747 13 6 3.5880 3.1831 -5.3931 14 6 4.2995 3.9049 -6.3331 15 6 3.8874 3.9167 -7.6525 16 6 2.7673 3.2016 -8.0332 17 6 2.0590 2.4754 -7.0942 18 8 1.6422 2.3991 -3.5121 19 6 2.3776 2.0310 1.2628 20 6 1.3988 1.7339 2.4132 21 7 2.2781 0.5885 2.7289 22 6 2.0992 -0.6113 3.3641 23 1 2.9275 -1.2967 3.4670 24 6 0.8533 -0.9467 3.8760 25 7 -0.1563 -0.1117 3.7504 26 14 0.6094 -2.5832 4.7432 27 1 1.5128 -2.6597 5.9193 28 1 -0.8009 -2.6996 5.1933 29 1 0.9223 -3.6916 3.8056 30 6 3.4249 1.2559 2.0828 31 1 -0.3633 -1.0238 0.0893 32 1 -0.3633 0.5892 0.8420 33 1 -0.3633 0.4346 -0.9312 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.7213 0.7077 -2.7489 37 1 2.5174 -0.5978 -2.4892 38 1 1.7697 -0.5029 -4.7128 39 1 3.3478 0.2801 -5.0325 40 1 3.9070 3.1781 -4.3613 41 1 5.1750 4.4632 -6.0359 42 1 4.4408 4.4842 -8.3861 43 1 2.4450 3.2112 -9.0639 44 1 1.1833 1.9173 -7.3915 45 1 2.6083 3.0898 1.1453 46 1 1.3832 2.5021 3.1864 47 1 0.4023 1.4452 2.0787 48 1 -1.0269 -0.3459 4.1084 49 1 4.0431 0.5863 1.4850 50 1 4.0072 1.8836 2.7573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950336786.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:44 Heat of formation + Delta-G solvation = 4.953504 kcal Electronic energy + Delta-G solvation = -31076.207188 eV Core-core repulsion = 27070.312597 eV Total energy + Delta-G solvation = -4005.894590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.83930 -40.75305 -39.57015 -38.65235 -36.13872 -34.17216 -33.42679 -32.75856 -31.75086 -31.32566 -29.81702 -28.96717 -26.59602 -25.72778 -24.88667 -23.88670 -23.45149 -22.87021 -21.70898 -21.53846 -19.74376 -18.86459 -18.56373 -17.83283 -17.40925 -17.16811 -16.76493 -16.55686 -16.17772 -16.06261 -15.63940 -15.31928 -15.12662 -14.75037 -14.66574 -14.44429 -14.34492 -14.21233 -14.17104 -13.77709 -13.71016 -13.25631 -13.09682 -13.01473 -12.79679 -12.72833 -12.65164 -12.53274 -12.39621 -12.12034 -11.98514 -11.88090 -11.86645 -11.59482 -11.46120 -11.25854 -11.05217 -10.78581 -10.54216 -9.80466 -9.61791 -9.56489 -8.81199 -7.81707 -5.15610 0.40099 0.52027 1.46631 1.51018 1.52893 1.58330 1.81184 2.51317 2.75584 3.07855 3.29235 3.35669 3.45750 3.49936 3.82106 3.82622 3.90654 3.98901 4.01929 4.11440 4.19987 4.24035 4.31842 4.42102 4.45084 4.50641 4.55284 4.58462 4.67001 4.73561 4.78547 4.81372 4.82754 4.89322 4.98186 5.00505 5.05832 5.07539 5.13285 5.18922 5.22976 5.41480 5.45015 5.56225 5.59867 5.64324 5.72606 5.80340 5.91606 5.97972 6.12744 6.53850 6.97446 7.14670 7.67178 8.61017 9.33062 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024933 B = 0.002497 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.720559 B =11210.498186 C =11710.278727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.570 5.570 4 C 0.515 3.485 5 O -0.576 6.576 6 C 0.062 3.938 7 H 0.115 0.885 8 C -0.139 4.139 9 C -0.132 4.132 10 C 0.107 3.893 11 H 0.099 0.901 12 C -0.100 4.100 13 C -0.115 4.115 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.114 4.114 18 O -0.370 6.370 19 C 0.104 3.896 20 C 0.147 3.853 21 N -0.621 5.621 22 C -0.229 4.229 23 H 0.081 0.919 24 C -0.049 4.049 25 N -0.939 5.939 26 Si 0.966 3.034 27 H -0.288 1.288 28 H -0.299 1.299 29 H -0.273 1.273 30 C 0.112 3.888 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.091 0.909 46 H 0.020 0.980 47 H 0.071 0.929 48 H 0.247 0.753 49 H 0.057 0.943 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 -0.103 -24.124 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.026 4.026 3 N -0.301 5.301 4 C 0.304 3.696 5 O -0.455 6.455 6 C 0.002 3.998 7 H 0.132 0.868 8 C -0.176 4.176 9 C -0.170 4.170 10 C 0.050 3.950 11 H 0.116 0.884 12 C -0.100 4.100 13 C -0.133 4.133 14 C -0.153 4.153 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.132 4.132 18 O -0.289 6.289 19 C -0.002 4.002 20 C 0.021 3.979 21 N -0.348 5.348 22 C -0.357 4.357 23 H 0.099 0.901 24 C -0.244 4.244 25 N -0.587 5.587 26 Si 0.796 3.204 27 H -0.215 1.215 28 H -0.226 1.226 29 H -0.199 1.199 30 C -0.014 4.014 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.164 0.836 45 H 0.109 0.891 46 H 0.038 0.962 47 H 0.089 0.911 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.377 0.450 -23.946 24.347 hybrid contribution -0.233 -0.490 1.578 1.669 sum 4.144 -0.040 -22.368 22.748 Atomic orbital electron populations 1.22145 0.95800 1.02370 1.01133 1.21963 0.94795 0.80979 1.04870 1.47497 1.63344 1.14805 1.04428 1.20774 0.78080 0.85289 0.85479 1.90644 1.46295 1.21463 1.87128 1.23144 1.01366 0.89398 0.85916 0.86765 1.23204 0.98446 0.99412 0.96583 1.23016 1.02508 0.96979 0.94465 1.21900 0.99087 0.90706 0.83332 0.88374 1.19941 0.96076 0.99303 0.94727 1.21032 0.95714 0.97376 0.99193 1.21386 1.00432 0.99585 0.93914 1.21499 0.97366 0.99375 0.95958 1.21472 0.95370 0.96764 1.00596 1.21241 1.00604 0.99669 0.91695 1.89031 1.95110 1.30486 1.14267 1.22610 0.97502 0.96133 0.83939 1.22740 0.96495 0.87684 0.91021 1.46360 1.06826 1.14583 1.67079 1.19181 0.95250 0.92030 1.29240 0.90131 1.25372 0.95831 1.01030 1.02118 1.69963 1.00841 1.36904 1.51033 0.85348 0.75934 0.80513 0.78627 1.21464 1.22585 1.19862 1.23070 0.91656 0.93761 0.92929 0.91556 0.93725 0.92099 0.88698 0.88499 0.91358 0.86671 0.86880 0.89610 0.88072 0.85295 0.83836 0.83245 0.83630 0.89111 0.96177 0.91061 0.94413 0.92462 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.12 10.00 71.98 0.72 -4.40 16 2 C 0.10 3.11 5.15 86.38 0.44 3.56 16 3 N -0.57 -20.27 2.71 -803.51 -2.17 -22.45 16 4 C 0.52 18.32 6.99 87.66 0.61 18.93 16 5 O -0.58 -25.03 16.09 14.89 0.24 -24.79 16 6 C 0.06 1.67 2.84 30.53 0.09 1.76 16 7 H 0.12 2.68 5.77 -2.39 -0.01 2.66 16 8 C -0.14 -2.80 6.01 31.96 0.19 -2.61 16 9 C -0.13 -2.09 6.63 31.65 0.21 -1.88 16 10 C 0.11 2.21 3.63 30.22 0.11 2.32 16 11 H 0.10 1.61 8.03 -2.39 -0.02 1.60 16 12 C -0.10 -2.16 4.76 -19.87 -0.09 -2.25 16 13 C -0.11 -2.84 9.37 22.27 0.21 -2.63 16 14 C -0.14 -2.76 10.05 22.27 0.22 -2.54 16 15 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 16 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 17 C -0.11 -1.88 9.68 22.27 0.22 -1.66 16 18 O -0.37 -11.03 9.78 -131.04 -1.28 -12.31 16 19 C 0.10 4.13 4.52 46.75 0.21 4.34 16 20 C 0.15 6.80 6.79 86.44 0.59 7.38 16 21 N -0.62 -29.49 2.28 -716.71 -1.63 -31.13 16 22 C -0.23 -11.74 9.71 84.03 0.82 -10.93 16 23 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 24 C -0.05 -2.58 5.50 84.86 0.47 -2.11 16 25 N -0.94 -52.15 11.39 21.65 0.25 -51.90 16 26 Si 0.97 42.89 29.55 68.60 2.03 44.92 16 27 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 C 0.11 4.46 8.30 86.49 0.72 5.18 16 31 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.04 1.83 5.58 -2.39 -0.01 1.81 16 33 H 0.06 1.64 6.17 -2.39 -0.01 1.63 16 34 H 0.10 2.34 4.84 -2.38 -0.01 2.33 16 35 H 0.10 3.87 5.10 -2.39 -0.01 3.86 16 36 H 0.07 1.59 8.05 -2.39 -0.02 1.57 16 37 H 0.12 1.82 6.25 -2.39 -0.01 1.80 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.34 7.69 -2.39 -0.02 1.32 16 40 H 0.10 2.97 7.74 -2.91 -0.02 2.95 16 41 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 44 H 0.15 1.61 8.05 -2.91 -0.02 1.59 16 45 H 0.09 3.67 7.22 -2.39 -0.02 3.66 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 3.56 4.45 -2.39 -0.01 3.55 16 48 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 49 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.42 389.09 4.55 -63.87 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.95 Total: 24.72 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.17 Total: 9.08 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.56 Total: -105.48 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.04 Total: -37.11 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -68.42 4.55 -63.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950336786.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.822 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds