Wall clock time and date at job start Wed Apr 1 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47166 * 2 1 4 4 C 1.34768 * 120.00183 * 84.40996 * 3 2 1 5 5 O 1.21282 * 120.00123 * 185.20361 * 4 3 2 6 6 C 1.50703 * 120.00354 * 5.20568 * 4 3 2 7 7 H 1.08999 * 110.45179 * 322.95579 * 6 4 3 8 8 C 1.54475 * 110.51105 * 85.56128 * 6 4 3 9 9 O 1.44425 * 104.90123 * 94.75206 * 8 6 4 10 10 C 1.44687 * 105.13563 * 40.49460 * 9 8 6 11 11 C 1.54481 * 104.84283 * 319.51918 * 10 9 8 12 12 H 1.09004 * 110.50889 * 265.33513 * 11 10 9 13 13 C 1.50699 * 110.62679 * 142.68233 * 11 10 9 14 14 C 1.38227 * 120.00186 * 305.01190 * 13 11 10 15 15 C 1.38238 * 120.00196 * 179.81227 * 14 13 11 16 16 C 1.38239 * 119.99629 * 0.42025 * 15 14 13 17 17 C 1.38230 * 119.99926 * 359.81694 * 16 15 14 18 18 C 1.38232 * 120.00549 * 359.97438 * 17 16 15 19 19 C 1.46497 * 119.99693 * 264.40895 * 3 2 1 20 20 C 1.53948 * 113.74425 * 36.67519 * 19 3 2 21 21 N 1.47575 * 86.12103 * 222.04593 * 20 19 3 22 22 C 1.36934 * 134.49635 * 204.64082 * 21 20 19 23 23 H 1.07997 * 120.00235 * 180.02562 * 22 21 20 24 24 C 1.38819 * 120.00040 * 359.97438 * 22 21 20 25 25 N 1.31617 * 119.99371 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00254 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46983 * 59.99985 * 26 24 22 28 28 H 1.48491 * 109.47066 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47277 * 300.00152 * 26 24 22 30 30 C 1.47582 * 91.01261 * 24.63691 * 21 20 19 31 31 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47027 * 300.00673 * 1 2 3 33 33 H 1.09003 * 109.46964 * 60.00499 * 1 2 3 34 34 H 1.08996 * 109.47027 * 239.99327 * 2 1 3 35 35 H 1.09003 * 109.46964 * 119.99501 * 2 1 3 36 36 H 1.09007 * 110.37177 * 213.64072 * 8 6 4 37 37 H 1.09003 * 110.37259 * 335.86357 * 8 6 4 38 38 H 1.08998 * 110.35274 * 200.67184 * 10 9 8 39 39 H 1.09006 * 110.35582 * 78.36375 * 10 9 8 40 40 H 1.08003 * 120.00171 * 0.02562 * 14 13 11 41 41 H 1.07994 * 120.00204 * 180.21510 * 15 14 13 42 42 H 1.07998 * 120.00008 * 179.78391 * 16 15 14 43 43 H 1.08003 * 120.00060 * 179.97438 * 17 16 15 44 44 H 1.07997 * 120.00774 * 179.97438 * 18 17 16 45 45 H 1.08997 * 112.94588 * 168.40606 * 19 3 2 46 46 H 1.09003 * 113.76846 * 336.34990 * 20 19 3 47 47 H 1.09003 * 113.76827 * 107.74305 * 20 19 3 48 48 H 0.97000 * 119.99842 * 179.97438 * 25 24 22 49 49 H 1.09000 * 113.77293 * 221.05262 * 30 21 20 50 50 H 1.09003 * 113.77003 * 89.66429 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1358 2.0544 1.1616 5 8 2.4493 3.2260 1.1544 6 6 1.8777 1.3515 2.4694 7 1 1.0562 0.6427 2.3652 8 6 3.1544 0.6325 2.9586 9 8 3.7850 1.5678 3.8605 10 6 2.6997 2.1525 4.6179 11 6 1.5716 2.3745 3.5861 12 1 1.6077 3.3908 3.1935 13 6 0.2253 2.0957 4.2032 14 6 -0.0194 0.8763 4.8062 15 6 -1.2531 0.6220 5.3757 16 6 -2.2449 1.5841 5.3344 17 6 -2.0017 2.8018 4.7270 18 6 -0.7667 3.0577 4.1614 19 6 2.3790 2.0305 -1.2627 20 6 1.4675 1.6433 -2.4414 21 7 2.7046 1.5660 -3.2423 22 6 2.9934 1.6819 -4.5758 23 1 4.0126 1.5807 -4.9184 24 6 1.9760 1.9284 -5.4874 25 7 0.7337 2.0501 -5.0700 26 14 2.3697 2.0857 -7.3066 27 1 2.9871 0.8247 -7.7903 28 1 1.1187 2.3457 -8.0631 29 1 3.3164 3.2112 -7.5127 30 6 3.5057 1.3137 -2.0287 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.8945 -0.2859 3.4851 37 1 3.8125 0.4137 2.1177 38 1 3.0094 3.1032 5.0520 39 1 2.3701 1.4673 5.3989 40 1 0.7544 0.1233 4.8355 41 1 -1.4432 -0.3295 5.8499 42 1 -3.2099 1.3842 5.7762 43 1 -2.7767 3.5533 4.6944 44 1 -0.5767 4.0089 3.6865 45 1 2.5331 3.1046 -1.1594 46 1 0.9668 0.6837 -2.3127 47 1 0.7911 2.4391 -2.7535 48 1 0.0228 2.2227 -5.7069 49 1 4.4566 1.8461 -2.0114 50 1 3.6037 0.2573 -1.7788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950671324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:42 Heat of formation + Delta-G solvation = 8.906947 kcal Electronic energy + Delta-G solvation = -31127.671759 eV Core-core repulsion = 27121.948603 eV Total energy + Delta-G solvation = -4005.723156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99270 -39.50162 -38.53297 -37.36600 -35.08322 -33.58286 -32.13627 -31.15435 -30.60994 -30.18987 -28.56155 -27.44918 -24.83893 -24.28504 -23.75581 -23.42745 -22.69986 -22.40512 -20.75485 -19.46674 -18.39134 -17.72768 -16.99125 -16.74056 -16.46822 -16.00437 -15.83095 -15.45895 -15.02372 -14.86616 -14.66881 -14.44049 -13.88617 -13.76981 -13.65114 -13.55382 -13.26000 -12.95060 -12.67743 -12.56915 -12.43677 -12.26425 -11.89194 -11.65037 -11.56083 -11.50698 -11.41297 -11.19083 -11.10252 -10.97325 -10.91602 -10.87572 -10.69529 -10.28211 -10.12081 -10.03586 -9.56532 -9.41539 -9.14204 -8.91127 -8.81754 -8.17955 -6.92715 -5.80380 -3.13110 1.08319 1.16859 2.76348 3.18565 3.39064 3.42981 3.44029 3.50402 3.77688 4.31283 4.38121 4.45764 4.60288 4.67052 4.75991 4.76623 4.87307 4.91187 5.03035 5.09449 5.18022 5.20219 5.26128 5.31138 5.34124 5.40716 5.45613 5.51672 5.52745 5.56712 5.65436 5.74624 5.77047 5.83945 5.93061 5.93690 6.06942 6.18083 6.21885 6.28535 6.35389 6.41545 6.44349 6.54396 6.58354 6.76213 6.80006 7.17621 7.33428 7.50171 7.75847 7.93934 8.43294 9.00892 9.66825 10.53933 11.36667 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002722 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.827701 B =10282.971490 C =11076.654168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 N -0.594 5.594 4 C 0.523 3.477 5 O -0.537 6.537 6 C -0.140 4.140 7 H 0.110 0.890 8 C 0.060 3.940 9 O -0.364 6.364 10 C 0.056 3.944 11 C -0.073 4.073 12 H 0.112 0.888 13 C -0.073 4.073 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.109 4.109 19 C 0.090 3.910 20 C 0.157 3.843 21 N -0.606 5.606 22 C -0.224 4.224 23 H 0.081 0.919 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.285 1.285 28 H -0.289 1.289 29 H -0.283 1.283 30 C 0.108 3.892 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.255 0.745 49 H 0.047 0.953 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 -5.345 23.664 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.310 3.690 5 O -0.414 6.414 6 C -0.162 4.162 7 H 0.128 0.872 8 C -0.017 4.017 9 O -0.283 6.283 10 C -0.021 4.021 11 C -0.092 4.092 12 H 0.131 0.869 13 C -0.073 4.073 14 C -0.135 4.135 15 C -0.136 4.136 16 C -0.141 4.141 17 C -0.135 4.135 18 C -0.127 4.127 19 C -0.013 4.013 20 C 0.031 3.969 21 N -0.332 5.332 22 C -0.351 4.351 23 H 0.099 0.901 24 C -0.203 4.203 25 N -0.567 5.567 26 Si 0.744 3.256 27 H -0.212 1.212 28 H -0.215 1.215 29 H -0.210 1.210 30 C -0.019 4.019 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.132 0.868 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.860 -4.617 23.294 24.059 hybrid contribution -0.278 -0.244 -1.161 1.219 sum -4.137 -4.861 22.133 23.035 Atomic orbital electron populations 1.22321 0.95692 1.02196 1.03092 1.21546 0.94673 0.82849 1.02977 1.48132 1.63919 1.13873 1.06650 1.20138 0.77086 0.86872 0.84922 1.90660 1.47756 1.16005 1.86971 1.22877 1.00639 0.98713 0.93940 0.87245 1.23321 0.92591 0.92077 0.93735 1.89238 1.29162 1.57247 1.52623 1.23586 0.86075 0.99062 0.93393 1.21549 0.91835 1.01868 0.93956 0.86946 1.19705 0.94895 0.94342 0.98379 1.21000 0.97285 0.96576 0.98638 1.21118 0.93438 0.99294 0.99788 1.21165 0.99192 0.93950 0.99843 1.21172 0.96969 0.97273 0.98086 1.21157 0.93040 0.99333 0.99129 1.24037 0.98435 0.98461 0.80388 1.22693 0.90835 0.99083 0.84338 1.45641 1.03383 1.82830 1.01347 1.18942 0.93588 1.42493 0.80082 0.90127 1.24796 0.95263 1.02066 0.98170 1.69803 0.98883 1.54695 1.33325 0.86169 0.76947 0.77987 0.84471 1.21159 1.21524 1.20992 1.22984 0.95221 0.96877 0.86851 0.91708 0.92909 0.90834 0.89241 0.91356 0.91192 0.88519 0.88638 0.91799 0.86152 0.86074 0.86190 0.85994 0.85786 0.86751 0.94706 0.90669 0.93525 0.93519 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.77 37.16 0.36 -1.77 16 2 C 0.10 1.31 4.80 -4.04 -0.02 1.29 16 3 N -0.59 -9.45 2.70 -167.90 -0.45 -9.91 16 4 C 0.52 8.30 6.71 -10.99 -0.07 8.23 16 5 O -0.54 -10.55 15.01 5.56 0.08 -10.47 16 6 C -0.14 -1.63 1.97 -90.21 -0.18 -1.80 16 7 H 0.11 1.11 5.02 -51.93 -0.26 0.85 16 8 C 0.06 0.64 6.63 37.93 0.25 0.89 16 9 O -0.36 -4.63 11.67 -35.23 -0.41 -5.05 16 10 C 0.06 0.57 7.08 37.93 0.27 0.84 16 11 C -0.07 -0.82 2.87 -90.21 -0.26 -1.08 16 12 H 0.11 1.52 6.52 -51.93 -0.34 1.18 16 13 C -0.07 -0.73 4.78 -104.62 -0.50 -1.23 16 14 C -0.12 -1.00 8.19 -39.59 -0.32 -1.32 16 15 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 16 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 17 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 18 C -0.11 -1.09 9.68 -39.58 -0.38 -1.47 16 19 C 0.09 1.80 4.41 -70.14 -0.31 1.49 16 20 C 0.16 3.62 6.47 -2.98 -0.02 3.60 16 21 N -0.61 -15.50 3.70 -178.07 -0.66 -16.16 16 22 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 23 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 25 N -0.92 -27.05 11.38 55.49 0.63 -26.41 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 C 0.11 2.24 8.44 -2.98 -0.03 2.22 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.61 7.07 -51.93 -0.37 0.24 16 33 H 0.07 1.09 6.52 -51.93 -0.34 0.75 16 34 H 0.09 1.25 6.15 -51.93 -0.32 0.93 16 35 H 0.07 0.66 6.32 -51.93 -0.33 0.33 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.07 7.86 -51.93 -0.41 0.66 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.54 6.78 -51.93 -0.35 0.19 16 40 H 0.12 0.85 7.62 -52.48 -0.40 0.45 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 1.21 7.97 -52.49 -0.42 0.80 16 45 H 0.11 2.52 7.22 -51.93 -0.38 2.15 16 46 H 0.04 0.79 5.31 -51.93 -0.28 0.51 16 47 H 0.08 1.98 7.16 -51.93 -0.37 1.61 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.03 0.66 7.06 -51.93 -0.37 0.30 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -33.29 390.94 -10.02 -43.32 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.43 Total: 2.67 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.66 Total: -0.96 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.48 Total: -52.48 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.33 Total: -15.51 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.29 -10.02 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950671324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.224 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds