Wall clock time and date at job start Wed Apr 1 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47166 * 2 1 4 4 C 1.34768 * 120.00183 * 84.40996 * 3 2 1 5 5 O 1.21282 * 120.00123 * 185.20361 * 4 3 2 6 6 C 1.50703 * 120.00354 * 5.20568 * 4 3 2 7 7 H 1.08999 * 110.45179 * 322.95579 * 6 4 3 8 8 C 1.54475 * 110.51105 * 85.56128 * 6 4 3 9 9 O 1.44425 * 104.90123 * 94.75206 * 8 6 4 10 10 C 1.44687 * 105.13563 * 40.49460 * 9 8 6 11 11 C 1.54481 * 104.84283 * 319.51918 * 10 9 8 12 12 H 1.09004 * 110.50889 * 265.33513 * 11 10 9 13 13 C 1.50699 * 110.62679 * 142.68233 * 11 10 9 14 14 C 1.38227 * 120.00186 * 305.01190 * 13 11 10 15 15 C 1.38238 * 120.00196 * 179.81227 * 14 13 11 16 16 C 1.38239 * 119.99629 * 0.42025 * 15 14 13 17 17 C 1.38230 * 119.99926 * 359.81694 * 16 15 14 18 18 C 1.38232 * 120.00549 * 359.97438 * 17 16 15 19 19 C 1.46497 * 119.99693 * 264.40895 * 3 2 1 20 20 C 1.53948 * 113.74425 * 36.67519 * 19 3 2 21 21 N 1.47575 * 86.12103 * 222.04593 * 20 19 3 22 22 C 1.36934 * 134.49635 * 204.64082 * 21 20 19 23 23 H 1.07997 * 120.00235 * 180.02562 * 22 21 20 24 24 C 1.38819 * 120.00040 * 359.97438 * 22 21 20 25 25 N 1.31617 * 119.99371 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00254 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46983 * 59.99985 * 26 24 22 28 28 H 1.48491 * 109.47066 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47277 * 300.00152 * 26 24 22 30 30 C 1.47582 * 91.01261 * 24.63691 * 21 20 19 31 31 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47027 * 300.00673 * 1 2 3 33 33 H 1.09003 * 109.46964 * 60.00499 * 1 2 3 34 34 H 1.08996 * 109.47027 * 239.99327 * 2 1 3 35 35 H 1.09003 * 109.46964 * 119.99501 * 2 1 3 36 36 H 1.09007 * 110.37177 * 213.64072 * 8 6 4 37 37 H 1.09003 * 110.37259 * 335.86357 * 8 6 4 38 38 H 1.08998 * 110.35274 * 200.67184 * 10 9 8 39 39 H 1.09006 * 110.35582 * 78.36375 * 10 9 8 40 40 H 1.08003 * 120.00171 * 0.02562 * 14 13 11 41 41 H 1.07994 * 120.00204 * 180.21510 * 15 14 13 42 42 H 1.07998 * 120.00008 * 179.78391 * 16 15 14 43 43 H 1.08003 * 120.00060 * 179.97438 * 17 16 15 44 44 H 1.07997 * 120.00774 * 179.97438 * 18 17 16 45 45 H 1.08997 * 112.94588 * 168.40606 * 19 3 2 46 46 H 1.09003 * 113.76846 * 336.34990 * 20 19 3 47 47 H 1.09003 * 113.76827 * 107.74305 * 20 19 3 48 48 H 0.97000 * 119.99842 * 179.97438 * 25 24 22 49 49 H 1.09000 * 113.77293 * 221.05262 * 30 21 20 50 50 H 1.09003 * 113.77003 * 89.66429 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1358 2.0544 1.1616 5 8 2.4493 3.2260 1.1544 6 6 1.8777 1.3515 2.4694 7 1 1.0562 0.6427 2.3652 8 6 3.1544 0.6325 2.9586 9 8 3.7850 1.5678 3.8605 10 6 2.6997 2.1525 4.6179 11 6 1.5716 2.3745 3.5861 12 1 1.6077 3.3908 3.1935 13 6 0.2253 2.0957 4.2032 14 6 -0.0194 0.8763 4.8062 15 6 -1.2531 0.6220 5.3757 16 6 -2.2449 1.5841 5.3344 17 6 -2.0017 2.8018 4.7270 18 6 -0.7667 3.0577 4.1614 19 6 2.3790 2.0305 -1.2627 20 6 1.4675 1.6433 -2.4414 21 7 2.7046 1.5660 -3.2423 22 6 2.9934 1.6819 -4.5758 23 1 4.0126 1.5807 -4.9184 24 6 1.9760 1.9284 -5.4874 25 7 0.7337 2.0501 -5.0700 26 14 2.3697 2.0857 -7.3066 27 1 2.9871 0.8247 -7.7903 28 1 1.1187 2.3457 -8.0631 29 1 3.3164 3.2112 -7.5127 30 6 3.5057 1.3137 -2.0287 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.8945 -0.2859 3.4851 37 1 3.8125 0.4137 2.1177 38 1 3.0094 3.1032 5.0520 39 1 2.3701 1.4673 5.3989 40 1 0.7544 0.1233 4.8355 41 1 -1.4432 -0.3295 5.8499 42 1 -3.2099 1.3842 5.7762 43 1 -2.7767 3.5533 4.6944 44 1 -0.5767 4.0089 3.6865 45 1 2.5331 3.1046 -1.1594 46 1 0.9668 0.6837 -2.3127 47 1 0.7911 2.4391 -2.7535 48 1 0.0228 2.2227 -5.7069 49 1 4.4566 1.8461 -2.0114 50 1 3.6037 0.2573 -1.7788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950671324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:41 Heat of formation + Delta-G solvation = -11.146271 kcal Electronic energy + Delta-G solvation = -31128.541332 eV Core-core repulsion = 27121.948603 eV Total energy + Delta-G solvation = -4006.592729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.04450 -40.65547 -39.50681 -38.75792 -36.49393 -34.46016 -34.08875 -31.79505 -31.54437 -31.43326 -29.45398 -29.18770 -26.64808 -25.68132 -24.79517 -24.43218 -23.65581 -23.35191 -21.81185 -20.77989 -19.75442 -18.99926 -18.51396 -17.75076 -17.72093 -17.10582 -16.79427 -16.73371 -16.29530 -15.90914 -15.74289 -15.62918 -15.39139 -14.91558 -14.80231 -14.40746 -14.20689 -14.10560 -13.83244 -13.73237 -13.65432 -13.37258 -13.24213 -13.16061 -12.86852 -12.75377 -12.59914 -12.49992 -12.36591 -12.22278 -12.07577 -12.02373 -11.98974 -11.78871 -11.74009 -11.53452 -11.02532 -10.88152 -10.58631 -9.78213 -9.63303 -9.57427 -8.97641 -7.94231 -5.28620 0.42878 0.53080 1.44213 1.48030 1.52183 1.54093 1.89900 2.46926 2.82835 2.96776 3.23309 3.31384 3.41190 3.51988 3.77932 3.79380 3.93615 3.96505 4.05460 4.10769 4.19905 4.26251 4.30407 4.33194 4.36492 4.37788 4.46900 4.51846 4.62152 4.64132 4.71351 4.71782 4.75296 4.80134 4.82976 4.88202 4.94147 5.01826 5.12268 5.16521 5.21113 5.26500 5.39648 5.44699 5.59320 5.66867 5.68803 5.72945 5.76489 5.87599 6.14440 6.45946 6.87190 7.14468 7.55555 8.49170 9.22389 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002722 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.827701 B =10282.971490 C =11076.654168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.592 5.592 4 C 0.518 3.482 5 O -0.584 6.584 6 C -0.129 4.129 7 H 0.133 0.867 8 C 0.059 3.941 9 O -0.391 6.391 10 C 0.058 3.942 11 C -0.069 4.069 12 H 0.078 0.922 13 C -0.083 4.083 14 C -0.116 4.116 15 C -0.118 4.118 16 C -0.127 4.127 17 C -0.127 4.127 18 C -0.132 4.132 19 C 0.113 3.887 20 C 0.164 3.836 21 N -0.636 5.636 22 C -0.238 4.238 23 H 0.085 0.915 24 C -0.064 4.064 25 N -0.951 5.951 26 Si 0.982 3.018 27 H -0.274 1.274 28 H -0.293 1.293 29 H -0.278 1.278 30 C 0.116 3.884 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.250 0.750 49 H 0.048 0.952 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 -8.472 25.820 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.323 5.323 4 C 0.307 3.693 5 O -0.464 6.464 6 C -0.150 4.150 7 H 0.151 0.849 8 C -0.018 4.018 9 O -0.310 6.310 10 C -0.019 4.019 11 C -0.088 4.088 12 H 0.096 0.904 13 C -0.083 4.083 14 C -0.134 4.134 15 C -0.135 4.135 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.151 4.151 19 C 0.008 3.992 20 C 0.038 3.962 21 N -0.363 5.363 22 C -0.366 4.366 23 H 0.103 0.897 24 C -0.258 4.258 25 N -0.600 5.600 26 Si 0.810 3.190 27 H -0.199 1.199 28 H -0.219 1.219 29 H -0.204 1.204 30 C -0.010 4.010 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.149 0.851 44 H 0.128 0.872 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.873 -7.778 25.488 26.928 hybrid contribution -0.296 0.766 -1.743 1.927 sum -4.169 -7.012 23.744 25.107 Atomic orbital electron populations 1.22271 0.95174 1.03644 1.01692 1.21840 0.95066 0.80812 1.04641 1.48109 1.63904 1.15140 1.05186 1.20977 0.75725 0.86442 0.86137 1.90646 1.49700 1.18313 1.87710 1.22892 1.02290 0.98842 0.91023 0.84906 1.23544 0.91391 0.92951 0.93891 1.89212 1.30474 1.58089 1.53268 1.23688 0.85065 0.99749 0.93362 1.21412 0.93339 0.99910 0.94186 0.90397 1.19621 0.93952 0.95307 0.99415 1.21225 0.98241 0.96062 0.97880 1.21478 0.92862 1.00186 0.99000 1.21495 1.00371 0.93434 0.99157 1.21365 0.96683 0.98305 0.98164 1.21224 0.94182 0.99334 1.00310 1.23270 0.96974 0.97190 0.81811 1.22529 0.90112 0.98089 0.85440 1.45956 1.05220 1.83374 1.01787 1.19342 0.93935 1.41759 0.81561 0.89684 1.25661 0.95197 1.02401 1.02501 1.70001 0.99638 1.56031 1.34301 0.85107 0.76492 0.78288 0.79161 1.19944 1.21919 1.20446 1.23073 0.94902 0.98292 0.84730 0.88780 0.92168 0.94360 0.90182 0.86961 0.86784 0.89099 0.88875 0.89018 0.83883 0.83382 0.84089 0.85054 0.87233 0.89641 0.93724 0.94872 0.94157 0.93396 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.80 9.77 71.98 0.70 -3.10 16 2 C 0.10 2.27 4.80 86.38 0.41 2.68 16 3 N -0.59 -18.67 2.70 -803.51 -2.17 -20.84 16 4 C 0.52 16.45 6.71 87.66 0.59 17.04 16 5 O -0.58 -24.09 15.01 -3.03 -0.05 -24.14 16 6 C -0.13 -2.74 1.97 -10.53 -0.02 -2.76 16 7 H 0.13 2.18 5.02 -2.39 -0.01 2.17 16 8 C 0.06 1.05 6.63 72.48 0.48 1.54 16 9 O -0.39 -9.19 11.67 -148.98 -1.74 -10.93 16 10 C 0.06 1.08 7.08 72.49 0.51 1.60 16 11 C -0.07 -1.50 2.87 -10.53 -0.03 -1.53 16 12 H 0.08 2.24 6.52 -2.38 -0.02 2.23 16 13 C -0.08 -1.53 4.78 -19.87 -0.09 -1.62 16 14 C -0.12 -1.55 8.19 22.27 0.18 -1.37 16 15 C -0.12 -1.38 10.05 22.27 0.22 -1.16 16 16 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 17 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 18 C -0.13 -2.67 9.68 22.27 0.22 -2.45 16 19 C 0.11 4.64 4.41 46.75 0.21 4.85 16 20 C 0.16 7.93 6.47 86.48 0.56 8.49 16 21 N -0.64 -33.33 3.70 -717.29 -2.65 -35.99 16 22 C -0.24 -13.56 10.70 84.04 0.90 -12.66 16 23 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 24 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 25 N -0.95 -57.81 11.38 21.65 0.25 -57.57 16 26 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 29 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 30 C 0.12 4.83 8.44 86.48 0.73 5.56 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.26 7.07 -2.39 -0.02 1.24 16 33 H 0.04 1.13 6.52 -2.39 -0.02 1.12 16 34 H 0.08 2.06 6.15 -2.39 -0.01 2.04 16 35 H 0.11 1.66 6.32 -2.39 -0.02 1.64 16 36 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.09 1.74 7.86 -2.39 -0.02 1.72 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 1.21 6.78 -2.38 -0.02 1.20 16 40 H 0.14 1.22 7.62 -2.91 -0.02 1.20 16 41 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 42 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.11 2.39 7.97 -2.91 -0.02 2.36 16 45 H 0.09 4.03 7.22 -2.39 -0.02 4.01 16 46 H 0.05 2.06 5.31 -2.39 -0.01 2.05 16 47 H 0.03 1.86 7.16 -2.39 -0.02 1.84 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.06 2.29 7.06 -2.39 -0.02 2.27 16 Total: -1.00 -76.69 390.94 3.10 -73.60 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.95 Total: 19.22 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.48 Total: 8.51 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -4.58 Total: -114.39 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.78 Total: -35.07 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.69 3.10 -73.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950671324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.449 kcal (2) G-P(sol) polarization free energy of solvation -76.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds