Wall clock time and date at job start Wed Apr 1 2020 03:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46747 * 2 1 4 4 C 1.34776 * 119.99506 * 84.49527 * 3 2 1 5 5 O 1.21281 * 120.00352 * 4.89606 * 4 3 2 6 6 C 1.50705 * 119.99961 * 184.90297 * 4 3 2 7 7 H 1.09005 * 109.67815 * 48.69690 * 6 4 3 8 8 C 1.53407 * 109.68118 * 288.18069 * 6 4 3 9 9 C 1.53070 * 108.28961 * 175.49468 * 8 6 4 10 10 C 1.50774 * 109.64702 * 48.21003 * 9 8 6 11 11 C 1.38561 * 118.71782 * 162.38727 * 10 9 8 12 12 C 1.38106 * 120.30217 * 179.79552 * 11 10 9 13 13 C 1.50703 * 120.01171 * 179.97438 * 12 11 10 14 14 C 1.38285 * 119.98119 * 359.95482 * 12 11 10 15 15 C 1.37970 * 119.96068 * 0.07179 * 14 12 11 16 16 C 1.38309 * 121.44603 * 342.23087 * 10 9 8 17 17 O 1.35847 * 121.79659 * 0.37441 * 16 10 9 18 18 C 1.46489 * 120.00182 * 264.49193 * 3 2 1 19 19 C 1.53953 * 113.74449 * 36.67566 * 18 3 2 20 20 N 1.47580 * 86.11557 * 222.04545 * 19 18 3 21 21 C 1.36938 * 134.49016 * 204.63573 * 20 19 18 22 22 H 1.08003 * 120.00096 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00296 * 0.02562 * 21 20 19 24 24 N 1.31621 * 119.99681 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00040 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47422 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47280 * 120.00341 * 25 23 21 28 28 H 1.48505 * 109.47038 * 239.99990 * 25 23 21 29 29 C 1.47583 * 91.01837 * 24.63831 * 20 19 18 30 30 H 1.08994 * 109.47546 * 55.14008 * 1 2 3 31 31 H 1.09004 * 109.46436 * 175.14152 * 1 2 3 32 32 H 1.08999 * 109.47091 * 295.13022 * 1 2 3 33 33 H 1.09003 * 109.46762 * 240.00601 * 2 1 3 34 34 H 1.08993 * 109.47230 * 120.00395 * 2 1 3 35 35 H 1.09001 * 109.70573 * 55.79332 * 8 6 4 36 36 H 1.08998 * 109.73094 * 295.20985 * 8 6 4 37 37 H 1.09006 * 109.43996 * 168.25200 * 9 8 6 38 38 H 1.08997 * 109.43744 * 288.16531 * 9 8 6 39 39 H 1.08000 * 119.86140 * 359.76044 * 11 10 9 40 40 H 1.08996 * 109.47486 * 270.02670 * 13 12 11 41 41 H 1.09003 * 109.46709 * 30.02604 * 13 12 11 42 42 H 1.09003 * 109.47020 * 150.02095 * 13 12 11 43 43 H 1.08002 * 120.02123 * 180.09854 * 14 12 11 44 44 H 1.07999 * 119.89262 * 179.97438 * 15 14 12 45 45 H 1.09009 * 112.94532 * 168.41067 * 18 3 2 46 46 H 1.09001 * 113.76810 * 336.34950 * 19 18 3 47 47 H 1.09004 * 113.76545 * 107.74620 * 19 18 3 48 48 H 0.96999 * 119.99965 * 180.02562 * 24 23 21 49 49 H 1.08997 * 113.77153 * 221.05365 * 29 20 19 50 50 H 1.09007 * 113.76525 * 89.65503 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1373 2.0539 1.1619 5 8 1.9256 1.4890 2.2140 6 6 2.5333 3.5079 1.1537 7 1 1.9204 4.0512 0.4343 8 6 4.0138 3.6381 0.7736 9 6 4.3526 5.1268 0.6644 10 6 3.8341 5.8551 1.8785 11 6 4.3388 7.1130 2.1663 12 6 3.8841 7.8111 3.2678 13 6 4.4380 9.1786 3.5749 14 6 2.9201 7.2550 4.0886 15 6 2.4145 6.0025 3.8071 16 6 2.8713 5.2958 2.6989 17 8 2.3524 4.0639 2.4568 18 6 2.3772 2.0313 -1.2627 19 6 1.4642 1.6447 -2.4404 20 7 2.7003 1.5680 -3.2430 21 6 2.9872 1.6846 -4.5768 22 1 4.0060 1.5838 -4.9209 23 6 1.9688 1.9324 -5.4869 24 7 0.7272 2.0558 -5.0675 25 14 2.3602 2.0908 -7.3065 26 1 3.8195 1.9133 -7.5162 27 1 1.6203 1.0498 -8.0644 28 1 1.9517 3.4359 -7.7854 29 6 3.5030 1.3150 -2.0306 30 1 -0.3634 0.5873 -0.8432 31 1 -0.3632 -1.0241 -0.0870 32 1 -0.3633 0.4364 0.9304 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.1916 3.1496 -0.1844 36 1 4.6330 3.1758 1.5423 37 1 5.4340 5.2492 0.6024 38 1 3.8890 5.5396 -0.2316 39 1 5.0917 7.5496 1.5267 40 1 5.3084 9.0808 4.2236 41 1 4.7301 9.6692 2.6464 42 1 3.6759 9.7749 4.0768 43 1 2.5629 7.8010 4.9493 44 1 1.6619 5.5691 4.4491 45 1 2.5314 3.1054 -1.1590 46 1 0.9636 0.6850 -2.3116 47 1 0.7873 2.4406 -2.7512 48 1 0.0155 2.2286 -5.7035 49 1 4.4539 1.8475 -2.0142 50 1 3.6013 0.2584 -1.7814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950883198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:34 Heat of formation + Delta-G solvation = 8.645972 kcal Electronic energy + Delta-G solvation = -30957.706428 eV Core-core repulsion = 26951.971955 eV Total energy + Delta-G solvation = -4005.734473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12665 -39.83088 -38.13711 -37.44311 -34.68591 -34.41414 -32.50768 -32.09486 -31.23607 -29.99331 -27.76737 -27.40120 -25.80248 -25.03826 -23.71554 -23.45446 -22.90582 -22.37247 -20.21184 -19.74708 -18.66304 -18.03066 -17.42804 -16.78190 -16.50023 -15.80571 -15.33101 -15.02425 -14.93922 -14.78377 -14.48426 -14.22692 -13.92004 -13.86438 -13.79247 -13.40365 -13.34644 -13.16683 -12.76326 -12.69906 -12.45871 -12.41504 -12.09939 -11.87049 -11.70760 -11.59129 -11.45788 -11.31608 -11.15735 -10.98492 -10.94667 -10.87065 -10.68313 -10.50509 -10.42555 -10.13133 -9.68340 -9.44619 -8.92523 -8.89693 -8.29578 -8.08541 -7.04275 -5.90306 -3.23940 1.20160 1.29288 2.56066 2.75651 3.31328 3.36901 3.39654 3.50666 3.66388 4.30516 4.42821 4.43867 4.59708 4.66305 4.78314 4.85279 4.98373 5.05078 5.05518 5.18850 5.24807 5.28787 5.33267 5.37740 5.40044 5.44579 5.51981 5.54235 5.62381 5.67991 5.68925 5.73232 5.82741 5.85354 5.90519 5.98695 6.11210 6.15356 6.17969 6.28723 6.33378 6.35500 6.47365 6.51779 6.66177 6.77061 7.02679 7.07771 7.36337 7.38941 7.65199 7.83390 8.30872 8.90795 9.56976 10.41546 11.26603 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003050 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.381770 B = 9179.215560 C =10878.138661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.524 3.476 5 O -0.529 6.529 6 C 0.076 3.924 7 H 0.099 0.901 8 C -0.154 4.154 9 C -0.077 4.077 10 C -0.155 4.155 11 C -0.084 4.084 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.089 4.089 15 C -0.143 4.143 16 C 0.132 3.868 17 O -0.290 6.290 18 C 0.071 3.929 19 C 0.156 3.844 20 N -0.605 5.605 21 C -0.225 4.225 22 H 0.083 0.917 23 C -0.004 4.004 24 N -0.918 5.918 25 Si 0.913 3.087 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.108 3.892 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.110 0.890 46 H 0.040 0.960 47 H 0.078 0.922 48 H 0.255 0.745 49 H 0.048 0.952 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 8.520 15.237 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.323 5.323 4 C 0.310 3.690 5 O -0.405 6.405 6 C 0.017 3.983 7 H 0.116 0.884 8 C -0.192 4.192 9 C -0.114 4.114 10 C -0.156 4.156 11 C -0.102 4.102 12 C -0.124 4.124 13 C -0.164 4.164 14 C -0.107 4.107 15 C -0.162 4.162 16 C 0.086 3.914 17 O -0.203 6.203 18 C -0.033 4.033 19 C 0.030 3.970 20 N -0.332 5.332 21 C -0.353 4.353 22 H 0.100 0.900 23 C -0.201 4.201 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.216 1.216 29 C -0.019 4.019 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.127 0.873 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.116 8.130 15.566 18.291 hybrid contribution 0.171 0.017 -1.342 1.353 sum 5.287 8.147 14.224 17.224 Atomic orbital electron populations 1.22204 0.95739 1.02226 1.02636 1.21390 0.94599 0.81738 1.02944 1.48050 1.64039 1.14117 1.06065 1.19845 0.77743 0.87302 0.84091 1.90687 1.49884 1.69232 1.30733 1.22275 0.98209 0.93439 0.84407 0.88388 1.22334 0.94295 0.97818 1.04707 1.20509 1.01969 0.93335 0.95573 1.19865 0.99360 0.96923 0.99481 1.20775 0.99351 0.93271 0.96797 1.19762 0.98906 0.97371 0.96368 1.20702 1.00804 0.92969 1.01968 1.20772 0.96439 0.94450 0.99088 1.20578 1.02726 0.94713 0.98154 1.18730 0.92773 0.84650 0.95199 1.86039 1.73671 1.29156 1.31459 1.24309 0.99916 0.97423 0.81687 1.22709 0.90801 0.99649 0.83840 1.45708 1.03184 1.82861 1.01419 1.19018 0.93672 1.42569 0.80008 0.89956 1.24800 0.95246 1.01897 0.98204 1.69808 0.98920 1.54516 1.33250 0.86036 0.77537 0.77424 0.84666 1.20392 1.21660 1.21595 1.23007 0.94667 0.97385 0.86835 0.91369 0.91839 0.92632 0.89640 0.90519 0.88086 0.89880 0.89452 0.89683 0.85820 0.91537 0.91746 0.91755 0.85573 0.85149 0.87259 0.94200 0.90384 0.93501 0.93344 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 9.90 37.16 0.37 -2.08 16 2 C 0.12 1.73 5.16 -4.04 -0.02 1.71 16 3 N -0.59 -9.31 2.70 -167.89 -0.45 -9.77 16 4 C 0.52 8.71 7.01 -10.98 -0.08 8.63 16 5 O -0.53 -10.36 16.19 -13.99 -0.23 -10.59 16 6 C 0.08 1.11 2.33 -27.67 -0.06 1.05 16 7 H 0.10 1.37 7.25 -51.93 -0.38 0.99 16 8 C -0.15 -1.90 5.08 -26.48 -0.13 -2.04 16 9 C -0.08 -0.84 5.86 -27.81 -0.16 -1.00 16 10 C -0.16 -1.90 5.75 -104.44 -0.60 -2.50 16 11 C -0.08 -0.89 9.32 -39.51 -0.37 -1.26 16 12 C -0.12 -1.23 5.88 -104.65 -0.62 -1.85 16 13 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 14 C -0.09 -0.92 9.70 -39.66 -0.38 -1.30 16 15 C -0.14 -1.75 9.94 -39.34 -0.39 -2.14 16 16 C 0.13 1.83 6.47 -39.22 -0.25 1.58 16 17 O -0.29 -4.62 9.49 -38.81 -0.37 -4.98 16 18 C 0.07 1.19 3.13 -70.14 -0.22 0.97 16 19 C 0.16 3.31 6.42 -2.97 -0.02 3.29 16 20 N -0.60 -14.12 3.70 -178.07 -0.66 -14.78 16 21 C -0.23 -5.89 10.70 -15.06 -0.16 -6.05 16 22 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 24 N -0.92 -25.69 11.38 55.49 0.63 -25.05 16 25 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.11 1.97 8.13 -2.97 -0.02 1.95 16 30 H 0.07 1.06 6.58 -51.93 -0.34 0.72 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.29 6.15 -51.93 -0.32 0.97 16 34 H 0.08 1.14 7.53 -51.93 -0.39 0.75 16 35 H 0.10 1.23 5.35 -51.93 -0.28 0.95 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 42 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 45 H 0.11 1.72 5.19 -51.92 -0.27 1.45 16 46 H 0.04 0.86 5.39 -51.93 -0.28 0.58 16 47 H 0.08 1.87 7.15 -51.93 -0.37 1.49 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 50 H 0.04 0.71 7.06 -51.92 -0.37 0.34 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -31.33 391.39 -10.65 -41.99 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.59 Total: 2.88 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.86 Total: -1.67 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.48 Total: -49.60 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.59 Total: -15.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.33 -10.65 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950883198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.633 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds