Wall clock time and date at job start Wed Apr 1 2020 03:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46747 * 2 1 4 4 C 1.34776 * 119.99506 * 84.49527 * 3 2 1 5 5 O 1.21281 * 120.00352 * 4.89606 * 4 3 2 6 6 C 1.50705 * 119.99961 * 184.90297 * 4 3 2 7 7 H 1.09005 * 109.67815 * 48.69690 * 6 4 3 8 8 C 1.53407 * 109.68118 * 288.18069 * 6 4 3 9 9 C 1.53070 * 108.28961 * 175.49468 * 8 6 4 10 10 C 1.50774 * 109.64702 * 48.21003 * 9 8 6 11 11 C 1.38561 * 118.71782 * 162.38727 * 10 9 8 12 12 C 1.38106 * 120.30217 * 179.79552 * 11 10 9 13 13 C 1.50703 * 120.01171 * 179.97438 * 12 11 10 14 14 C 1.38285 * 119.98119 * 359.95482 * 12 11 10 15 15 C 1.37970 * 119.96068 * 0.07179 * 14 12 11 16 16 C 1.38309 * 121.44603 * 342.23087 * 10 9 8 17 17 O 1.35847 * 121.79659 * 0.37441 * 16 10 9 18 18 C 1.46489 * 120.00182 * 264.49193 * 3 2 1 19 19 C 1.53953 * 113.74449 * 36.67566 * 18 3 2 20 20 N 1.47580 * 86.11557 * 222.04545 * 19 18 3 21 21 C 1.36938 * 134.49016 * 204.63573 * 20 19 18 22 22 H 1.08003 * 120.00096 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00296 * 0.02562 * 21 20 19 24 24 N 1.31621 * 119.99681 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 120.00040 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47422 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.47280 * 120.00341 * 25 23 21 28 28 H 1.48505 * 109.47038 * 239.99990 * 25 23 21 29 29 C 1.47583 * 91.01837 * 24.63831 * 20 19 18 30 30 H 1.08994 * 109.47546 * 55.14008 * 1 2 3 31 31 H 1.09004 * 109.46436 * 175.14152 * 1 2 3 32 32 H 1.08999 * 109.47091 * 295.13022 * 1 2 3 33 33 H 1.09003 * 109.46762 * 240.00601 * 2 1 3 34 34 H 1.08993 * 109.47230 * 120.00395 * 2 1 3 35 35 H 1.09001 * 109.70573 * 55.79332 * 8 6 4 36 36 H 1.08998 * 109.73094 * 295.20985 * 8 6 4 37 37 H 1.09006 * 109.43996 * 168.25200 * 9 8 6 38 38 H 1.08997 * 109.43744 * 288.16531 * 9 8 6 39 39 H 1.08000 * 119.86140 * 359.76044 * 11 10 9 40 40 H 1.08996 * 109.47486 * 270.02670 * 13 12 11 41 41 H 1.09003 * 109.46709 * 30.02604 * 13 12 11 42 42 H 1.09003 * 109.47020 * 150.02095 * 13 12 11 43 43 H 1.08002 * 120.02123 * 180.09854 * 14 12 11 44 44 H 1.07999 * 119.89262 * 179.97438 * 15 14 12 45 45 H 1.09009 * 112.94532 * 168.41067 * 18 3 2 46 46 H 1.09001 * 113.76810 * 336.34950 * 19 18 3 47 47 H 1.09004 * 113.76545 * 107.74620 * 19 18 3 48 48 H 0.96999 * 119.99965 * 180.02562 * 24 23 21 49 49 H 1.08997 * 113.77153 * 221.05365 * 29 20 19 50 50 H 1.09007 * 113.76525 * 89.65503 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1373 2.0539 1.1619 5 8 1.9256 1.4890 2.2140 6 6 2.5333 3.5079 1.1537 7 1 1.9204 4.0512 0.4343 8 6 4.0138 3.6381 0.7736 9 6 4.3526 5.1268 0.6644 10 6 3.8341 5.8551 1.8785 11 6 4.3388 7.1130 2.1663 12 6 3.8841 7.8111 3.2678 13 6 4.4380 9.1786 3.5749 14 6 2.9201 7.2550 4.0886 15 6 2.4145 6.0025 3.8071 16 6 2.8713 5.2958 2.6989 17 8 2.3524 4.0639 2.4568 18 6 2.3772 2.0313 -1.2627 19 6 1.4642 1.6447 -2.4404 20 7 2.7003 1.5680 -3.2430 21 6 2.9872 1.6846 -4.5768 22 1 4.0060 1.5838 -4.9209 23 6 1.9688 1.9324 -5.4869 24 7 0.7272 2.0558 -5.0675 25 14 2.3602 2.0908 -7.3065 26 1 3.8195 1.9133 -7.5162 27 1 1.6203 1.0498 -8.0644 28 1 1.9517 3.4359 -7.7854 29 6 3.5030 1.3150 -2.0306 30 1 -0.3634 0.5873 -0.8432 31 1 -0.3632 -1.0241 -0.0870 32 1 -0.3633 0.4364 0.9304 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.1916 3.1496 -0.1844 36 1 4.6330 3.1758 1.5423 37 1 5.4340 5.2492 0.6024 38 1 3.8890 5.5396 -0.2316 39 1 5.0917 7.5496 1.5267 40 1 5.3084 9.0808 4.2236 41 1 4.7301 9.6692 2.6464 42 1 3.6759 9.7749 4.0768 43 1 2.5629 7.8010 4.9493 44 1 1.6619 5.5691 4.4491 45 1 2.5314 3.1054 -1.1590 46 1 0.9636 0.6850 -2.3116 47 1 0.7873 2.4406 -2.7512 48 1 0.0155 2.2286 -5.7035 49 1 4.4539 1.8475 -2.0142 50 1 3.6013 0.2584 -1.7814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950883198.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:33 Heat of formation + Delta-G solvation = -7.093272 kcal Electronic energy + Delta-G solvation = -30958.388933 eV Core-core repulsion = 26951.971955 eV Total energy + Delta-G solvation = -4006.416978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.23626 -41.05663 -39.49979 -38.56162 -36.12800 -35.42456 -34.00071 -33.34418 -32.29878 -31.07130 -29.43405 -28.44252 -26.71985 -26.60896 -25.27264 -24.59507 -24.06105 -23.26655 -21.75430 -20.75067 -19.92606 -19.18525 -18.82893 -18.36288 -17.60235 -17.14350 -16.76306 -16.34509 -16.22049 -15.82918 -15.70788 -15.38496 -15.17898 -14.88978 -14.78135 -14.66705 -14.35212 -14.21722 -13.99071 -13.90998 -13.56860 -13.55020 -13.26751 -13.17897 -13.10451 -12.91343 -12.70071 -12.56249 -12.51407 -12.29795 -12.11719 -12.06788 -11.97342 -11.89317 -11.88091 -11.50573 -11.40004 -10.90641 -10.74352 -9.73383 -9.70784 -8.98221 -8.92702 -7.90134 -5.23586 0.36219 0.42301 1.29889 1.47527 1.49404 1.52561 1.59603 2.35340 2.52863 2.74998 3.17447 3.29710 3.44523 3.49077 3.66938 3.73228 3.78873 3.80420 4.03614 4.05463 4.12590 4.21096 4.25241 4.32507 4.36722 4.40383 4.50145 4.52751 4.57334 4.72634 4.79144 4.82973 4.84844 4.89056 4.91981 4.93105 4.95525 5.01530 5.13941 5.19274 5.22156 5.27649 5.33539 5.36632 5.47257 5.47961 5.56691 5.69122 5.88098 5.91367 6.25109 6.42732 6.92124 6.97414 7.61155 8.52653 9.26546 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003050 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.381770 B = 9179.215560 C =10878.138661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.585 5.585 4 C 0.526 3.474 5 O -0.561 6.561 6 C 0.076 3.924 7 H 0.101 0.899 8 C -0.146 4.146 9 C -0.074 4.074 10 C -0.163 4.163 11 C -0.090 4.090 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.091 4.091 15 C -0.159 4.159 16 C 0.097 3.903 17 O -0.316 6.316 18 C 0.102 3.898 19 C 0.155 3.845 20 N -0.632 5.632 21 C -0.228 4.228 22 H 0.088 0.912 23 C -0.062 4.062 24 N -0.950 5.950 25 Si 0.974 3.026 26 H -0.264 1.264 27 H -0.297 1.297 28 H -0.293 1.293 29 C 0.113 3.887 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.151 0.849 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.035 0.965 47 H 0.045 0.955 48 H 0.248 0.752 49 H 0.071 0.929 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.528 9.980 15.588 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.317 5.317 4 C 0.313 3.687 5 O -0.439 6.439 6 C 0.017 3.983 7 H 0.119 0.881 8 C -0.183 4.183 9 C -0.111 4.111 10 C -0.164 4.164 11 C -0.108 4.108 12 C -0.123 4.123 13 C -0.163 4.163 14 C -0.109 4.109 15 C -0.177 4.177 16 C 0.052 3.948 17 O -0.230 6.230 18 C -0.003 4.003 19 C 0.029 3.971 20 N -0.359 5.359 21 C -0.356 4.356 22 H 0.106 0.894 23 C -0.256 4.256 24 N -0.599 5.599 25 Si 0.803 3.197 26 H -0.188 1.188 27 H -0.224 1.224 28 H -0.220 1.220 29 C -0.013 4.013 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.169 0.831 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.269 9.589 15.938 19.970 hybrid contribution -0.478 -0.414 -1.333 1.475 sum 6.791 9.174 14.605 18.536 Atomic orbital electron populations 1.22129 0.95350 1.03194 1.01396 1.21475 0.94911 0.81355 1.03152 1.48001 1.63754 1.14395 1.05558 1.20212 0.76845 0.88123 0.83502 1.90666 1.51368 1.70156 1.31734 1.22270 0.99791 0.91753 0.84532 0.88105 1.22289 0.92419 0.99161 1.04479 1.20556 1.03326 0.91896 0.95275 1.20069 0.99041 0.97697 0.99619 1.21097 0.99641 0.92695 0.97353 1.20191 0.98015 0.98454 0.95597 1.20765 1.01422 0.91266 1.02849 1.21096 0.96215 0.93683 0.99877 1.20790 1.03201 0.95673 0.98075 1.19060 0.94421 0.84534 0.96750 1.85990 1.74645 1.30519 1.31848 1.23861 0.97548 0.98068 0.80806 1.22598 0.90508 0.98401 0.85614 1.45987 1.05002 1.83116 1.01786 1.19380 0.93864 1.40837 0.81527 0.89389 1.25553 0.95288 1.02769 1.01945 1.69984 0.99604 1.56331 1.33956 0.85069 0.77868 0.76601 0.80130 1.18829 1.22438 1.22025 1.23142 0.95436 0.98259 0.84456 0.92945 0.89762 0.93431 0.89516 0.90047 0.87665 0.90360 0.87236 0.89132 0.83560 0.90439 0.90789 0.90623 0.83104 0.85353 0.85799 0.94734 0.93623 0.94297 0.91040 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.70 9.90 71.98 0.71 -3.99 16 2 C 0.11 3.34 5.16 86.38 0.45 3.78 16 3 N -0.58 -18.24 2.70 -803.48 -2.17 -20.41 16 4 C 0.53 17.45 7.01 87.66 0.61 18.07 16 5 O -0.56 -22.23 16.19 15.66 0.25 -21.98 16 6 C 0.08 2.21 2.33 29.99 0.07 2.28 16 7 H 0.10 2.81 7.25 -2.38 -0.02 2.79 16 8 C -0.15 -3.42 5.08 30.75 0.16 -3.26 16 9 C -0.07 -1.47 5.86 29.89 0.18 -1.29 16 10 C -0.16 -3.78 5.75 -19.75 -0.11 -3.89 16 11 C -0.09 -1.70 9.32 22.32 0.21 -1.49 16 12 C -0.12 -2.13 5.88 -19.88 -0.12 -2.25 16 13 C -0.11 -1.16 10.01 71.24 0.71 -0.44 16 14 C -0.09 -1.71 9.70 22.22 0.22 -1.50 16 15 C -0.16 -3.87 9.94 22.43 0.22 -3.65 16 16 C 0.10 2.69 6.47 22.51 0.15 2.83 16 17 O -0.32 -10.25 9.49 -73.13 -0.69 -10.94 16 18 C 0.10 3.34 3.13 46.75 0.15 3.48 16 19 C 0.15 6.65 6.42 86.48 0.55 7.20 16 20 N -0.63 -29.15 3.70 -717.29 -2.65 -31.81 16 21 C -0.23 -11.77 10.70 84.03 0.90 -10.87 16 22 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 24 N -0.95 -54.26 11.38 21.65 0.25 -54.02 16 25 Si 0.97 43.44 29.55 68.60 2.03 45.47 16 26 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 29 C 0.11 3.92 8.13 86.48 0.70 4.62 16 30 H 0.05 1.67 6.58 -2.39 -0.02 1.66 16 31 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 2.56 6.15 -2.39 -0.01 2.54 16 34 H 0.08 2.37 7.53 -2.39 -0.02 2.35 16 35 H 0.11 2.33 5.35 -2.39 -0.01 2.31 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 42 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 43 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 44 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.12 3.76 5.19 -2.38 -0.01 3.75 16 46 H 0.03 1.52 5.39 -2.39 -0.01 1.51 16 47 H 0.05 2.26 7.15 -2.39 -0.02 2.24 16 48 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 49 H 0.07 2.20 7.79 -2.39 -0.02 2.18 16 50 H 0.05 1.65 7.06 -2.38 -0.02 1.64 16 Total: -1.00 -68.49 391.39 4.17 -64.32 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.95 Total: 22.59 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.22 Total: 6.78 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.58 Total: -106.23 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.44 Total: -32.92 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.49 4.17 -64.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950883198.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.223 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds