Wall clock time and date at job start Wed Apr 1 2020 03:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47053 * 2 1 4 4 C 1.34775 * 119.99544 * 84.47832 * 3 2 1 5 5 O 1.21279 * 120.00443 * 4.49455 * 4 3 2 6 6 C 1.50707 * 119.99610 * 184.49210 * 4 3 2 7 7 H 1.09000 * 109.71049 * 307.35009 * 6 4 3 8 8 C 1.53414 * 109.68084 * 67.88863 * 6 4 3 9 9 C 1.53079 * 108.28899 * 184.46355 * 8 6 4 10 10 C 1.50765 * 109.64362 * 311.83199 * 9 8 6 11 11 C 1.38600 * 118.69589 * 197.66203 * 10 9 8 12 12 C 1.38104 * 120.29349 * 180.16142 * 11 10 9 13 13 C 1.50699 * 120.00708 * 179.97438 * 12 11 10 14 14 C 1.38287 * 119.98275 * 0.02562 * 12 11 10 15 15 C 1.37967 * 119.96363 * 359.92607 * 14 12 11 16 16 C 1.38285 * 121.47274 * 17.68472 * 10 9 8 17 17 O 1.35851 * 121.78487 * 359.71974 * 16 10 9 18 18 C 1.46503 * 120.00065 * 264.47940 * 3 2 1 19 19 C 1.53943 * 113.74014 * 31.98244 * 18 3 2 20 20 N 1.47816 * 86.03641 * 222.08408 * 19 18 3 21 21 C 1.36931 * 134.45675 * 204.65116 * 20 19 18 22 22 H 1.08000 * 120.00342 * 184.64655 * 21 20 19 23 23 C 1.38812 * 120.00129 * 4.63435 * 21 20 19 24 24 N 1.31624 * 119.99904 * 5.33082 * 23 21 20 25 25 Si 1.86803 * 119.99982 * 185.32202 * 23 21 20 26 26 H 1.48503 * 109.46971 * 95.00174 * 25 23 21 27 27 H 1.48503 * 109.46887 * 214.99935 * 25 23 21 28 28 H 1.48495 * 109.47398 * 335.00152 * 25 23 21 29 29 C 1.47582 * 91.04809 * 24.55270 * 20 19 18 30 30 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47126 * 299.99268 * 1 2 3 32 32 H 1.09004 * 109.47272 * 59.99942 * 1 2 3 33 33 H 1.09005 * 109.47340 * 240.00290 * 2 1 3 34 34 H 1.08997 * 109.47522 * 120.00345 * 2 1 3 35 35 H 1.09007 * 109.69594 * 64.76676 * 8 6 4 36 36 H 1.08992 * 109.70056 * 304.16670 * 8 6 4 37 37 H 1.08998 * 109.43101 * 71.87551 * 9 8 6 38 38 H 1.09001 * 109.43095 * 191.79077 * 9 8 6 39 39 H 1.08000 * 119.86260 * 0.15486 * 11 10 9 40 40 H 1.08996 * 109.47092 * 270.02019 * 13 12 11 41 41 H 1.08998 * 109.47547 * 30.02158 * 13 12 11 42 42 H 1.09004 * 109.47327 * 150.02403 * 13 12 11 43 43 H 1.08003 * 120.01891 * 179.97438 * 14 12 11 44 44 H 1.07997 * 119.89841 * 179.97438 * 15 14 12 45 45 H 1.08995 * 112.94394 * 163.57861 * 18 3 2 46 46 H 1.08997 * 113.77353 * 336.34989 * 19 18 3 47 47 H 1.09008 * 113.76716 * 107.74998 * 19 18 3 48 48 H 0.96999 * 119.99966 * 179.97438 * 24 23 21 49 49 H 1.09004 * 113.76475 * 221.15308 * 29 20 19 50 50 H 1.08994 * 113.76993 * 89.75770 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1370 2.0540 1.1618 5 8 1.9179 1.4912 2.2136 6 6 2.5420 3.5055 1.1540 7 1 3.4586 3.6283 0.5770 8 6 1.4229 4.3509 0.5323 9 6 1.9108 5.7988 0.4374 10 6 2.5105 6.2189 1.7553 11 6 2.6722 7.5713 2.0120 12 6 3.2212 7.9928 3.2071 13 6 3.3945 9.4648 3.4792 14 6 3.6127 7.0636 4.1535 15 6 3.4531 5.7162 3.9036 16 6 2.8981 5.2879 2.7016 17 8 2.7531 3.9533 2.4937 18 6 2.3775 2.0312 -1.2629 19 6 1.5383 1.5587 -2.4638 20 7 2.8089 1.5543 -3.2191 21 6 3.1376 1.6658 -4.5436 22 1 4.1656 1.5561 -4.8561 23 6 2.1495 1.9195 -5.4850 24 7 0.9148 2.1570 -5.0955 25 14 2.5721 1.9241 -7.3046 26 1 2.2837 0.5872 -7.8831 27 1 1.7550 2.9510 -7.9998 28 1 4.0132 2.2379 -7.4773 29 6 3.5806 1.3841 -1.9726 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5338 4.3031 1.1611 36 1 1.1895 3.9758 -0.4641 37 1 2.6649 5.8768 -0.3456 38 1 1.0700 6.4497 0.1976 39 1 2.3677 8.2988 1.2742 40 1 4.3739 9.7868 3.1253 41 1 2.6178 10.0246 2.9581 42 1 3.3173 9.6478 4.5510 43 1 4.0425 7.3926 5.0882 44 1 3.7596 4.9915 4.6433 45 1 2.4497 3.1154 -1.1773 46 1 1.1018 0.5686 -2.3324 47 1 0.8193 2.2987 -2.8156 48 1 0.2244 2.3346 -5.7532 49 1 4.4892 1.9849 -1.9331 50 1 3.7454 0.3426 -1.6967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950883199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:40 Heat of formation + Delta-G solvation = 10.384216 kcal Electronic energy + Delta-G solvation = -30987.443398 eV Core-core repulsion = 26981.784301 eV Total energy + Delta-G solvation = -4005.659097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.11745 -39.81753 -38.11938 -37.42843 -34.71243 -34.37416 -32.49910 -32.09786 -31.23055 -30.00263 -27.76490 -27.39057 -25.79227 -24.98024 -23.71224 -23.43169 -22.92981 -22.38087 -20.23726 -19.69978 -18.66426 -18.01565 -17.41492 -16.74941 -16.48693 -15.72090 -15.52966 -15.08165 -14.90083 -14.62070 -14.43333 -14.20839 -13.96249 -13.92416 -13.80201 -13.43816 -13.34273 -13.05686 -12.76457 -12.70492 -12.52540 -12.36148 -12.13321 -11.81915 -11.72742 -11.57492 -11.42154 -11.30738 -11.13092 -10.98686 -10.93592 -10.83272 -10.72262 -10.45682 -10.42425 -10.13695 -9.69200 -9.43970 -8.92919 -8.88692 -8.30094 -8.07786 -7.02825 -5.89896 -3.24590 1.20933 1.29977 2.62648 2.69892 3.31607 3.37099 3.39089 3.52415 3.67092 4.30681 4.44346 4.44902 4.60994 4.68038 4.79113 4.87599 5.00543 5.05100 5.06878 5.18196 5.24977 5.29891 5.33509 5.38980 5.41611 5.44163 5.50014 5.55431 5.63195 5.66861 5.69741 5.78470 5.84190 5.87387 5.93520 6.02031 6.11014 6.14888 6.17698 6.30377 6.34379 6.36389 6.48117 6.50064 6.66342 6.76960 6.99329 7.10828 7.36983 7.38874 7.65657 7.84117 8.31535 8.90218 9.57012 10.41741 11.25695 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.003061 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.211686 B = 9146.529212 C =10822.898893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.524 3.476 5 O -0.529 6.529 6 C 0.077 3.923 7 H 0.097 0.903 8 C -0.155 4.155 9 C -0.077 4.077 10 C -0.155 4.155 11 C -0.084 4.084 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.090 4.090 15 C -0.143 4.143 16 C 0.131 3.869 17 O -0.290 6.290 18 C 0.069 3.931 19 C 0.151 3.849 20 N -0.605 5.605 21 C -0.224 4.224 22 H 0.081 0.919 23 C -0.004 4.004 24 N -0.917 5.917 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.107 3.893 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.113 0.887 46 H 0.038 0.962 47 H 0.086 0.914 48 H 0.255 0.745 49 H 0.048 0.952 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.048 9.110 14.949 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.323 5.323 4 C 0.310 3.690 5 O -0.406 6.406 6 C 0.017 3.983 7 H 0.115 0.885 8 C -0.193 4.193 9 C -0.114 4.114 10 C -0.156 4.156 11 C -0.102 4.102 12 C -0.124 4.124 13 C -0.164 4.164 14 C -0.108 4.108 15 C -0.162 4.162 16 C 0.086 3.914 17 O -0.203 6.203 18 C -0.035 4.035 19 C 0.025 3.975 20 N -0.332 5.332 21 C -0.352 4.352 22 H 0.099 0.901 23 C -0.201 4.201 24 N -0.564 5.564 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.205 1.205 29 C -0.020 4.020 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.142 0.858 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.130 0.870 46 H 0.055 0.945 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.870 8.700 15.287 17.688 hybrid contribution 0.166 -0.048 -1.341 1.352 sum 2.036 8.653 13.946 16.538 Atomic orbital electron populations 1.22181 0.95769 1.02089 1.02629 1.21389 0.94535 0.81810 1.02982 1.48065 1.64086 1.14015 1.06126 1.19854 0.77886 0.87172 0.84086 1.90687 1.49880 1.69232 1.30764 1.22251 1.00171 0.92929 0.82930 0.88501 1.22360 0.98015 0.95144 1.03753 1.20511 1.01068 0.95768 0.94043 1.19882 1.04528 0.93614 0.97541 1.20794 0.98622 0.94229 0.96552 1.19762 1.01829 0.95984 0.94823 1.20701 1.02061 0.91690 1.01992 1.20766 0.99328 0.91688 0.99009 1.20571 1.02740 0.96171 0.96703 1.18725 0.95814 0.82243 0.94617 1.86040 1.86953 1.19722 1.27609 1.24394 0.99526 0.97838 0.81750 1.22831 0.91188 0.99158 0.84344 1.45687 1.01909 1.84651 1.00937 1.18983 0.93790 1.42312 0.80102 0.90079 1.24783 0.95561 1.01613 0.98176 1.69791 1.00778 1.53176 1.32652 0.86089 0.77534 0.77418 0.84645 1.21580 1.21595 1.20488 1.23010 0.94667 0.97686 0.86635 0.91871 0.92636 0.91501 0.89603 0.90550 0.89850 0.87789 0.89691 0.89363 0.85794 0.91492 0.91764 0.91788 0.85591 0.85168 0.86973 0.94490 0.89592 0.93502 0.93389 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.95 37.16 0.37 -1.99 16 2 C 0.11 1.71 5.16 -4.04 -0.02 1.69 16 3 N -0.59 -9.31 2.70 -167.90 -0.45 -9.76 16 4 C 0.52 8.72 7.02 -10.98 -0.08 8.64 16 5 O -0.53 -10.39 16.17 -14.15 -0.23 -10.62 16 6 C 0.08 1.13 2.34 -27.66 -0.06 1.06 16 7 H 0.10 1.33 7.54 -51.93 -0.39 0.94 16 8 C -0.16 -2.00 5.03 -26.48 -0.13 -2.13 16 9 C -0.08 -0.88 5.86 -27.81 -0.16 -1.04 16 10 C -0.15 -1.92 5.75 -104.44 -0.60 -2.52 16 11 C -0.08 -0.90 9.32 -39.50 -0.37 -1.27 16 12 C -0.12 -1.24 5.88 -104.65 -0.62 -1.86 16 13 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 14 C -0.09 -0.92 9.70 -39.66 -0.38 -1.31 16 15 C -0.14 -1.75 9.94 -39.34 -0.39 -2.15 16 16 C 0.13 1.83 6.47 -39.23 -0.25 1.58 16 17 O -0.29 -4.62 9.47 -38.98 -0.37 -4.99 16 18 C 0.07 1.16 3.43 -70.14 -0.24 0.92 16 19 C 0.15 3.15 6.57 -2.84 -0.02 3.13 16 20 N -0.61 -14.20 3.70 -177.88 -0.66 -14.85 16 21 C -0.22 -5.89 10.69 -15.06 -0.16 -6.05 16 22 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 23 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 24 N -0.92 -25.34 11.29 55.49 0.63 -24.72 16 25 Si 0.91 21.07 29.56 -169.99 -5.02 16.04 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.11 2.01 8.47 -2.97 -0.03 1.99 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.00 6.79 -51.93 -0.35 0.64 16 33 H 0.09 1.30 6.20 -51.93 -0.32 0.97 16 34 H 0.08 1.14 7.53 -51.93 -0.39 0.75 16 35 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.10 1.37 5.73 -51.93 -0.30 1.07 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 42 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 43 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.11 1.78 4.61 -51.93 -0.24 1.54 16 46 H 0.04 0.78 5.37 -51.93 -0.28 0.50 16 47 H 0.09 2.01 6.87 -51.92 -0.36 1.66 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.04 0.72 7.41 -51.93 -0.39 0.34 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -31.07 392.83 -10.70 -41.77 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.63 Total: 3.13 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.88 Total: -1.92 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.48 Total: -49.33 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.60 Total: -15.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.07 -10.70 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950883199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.154 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds