Wall clock time and date at job start Wed Apr 1 2020 03:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47053 * 2 1 4 4 C 1.34775 * 119.99544 * 84.47832 * 3 2 1 5 5 O 1.21279 * 120.00443 * 4.49455 * 4 3 2 6 6 C 1.50707 * 119.99610 * 184.49210 * 4 3 2 7 7 H 1.09000 * 109.71049 * 307.35009 * 6 4 3 8 8 C 1.53414 * 109.68084 * 67.88863 * 6 4 3 9 9 C 1.53079 * 108.28899 * 184.46355 * 8 6 4 10 10 C 1.50765 * 109.64362 * 311.83199 * 9 8 6 11 11 C 1.38600 * 118.69589 * 197.66203 * 10 9 8 12 12 C 1.38104 * 120.29349 * 180.16142 * 11 10 9 13 13 C 1.50699 * 120.00708 * 179.97438 * 12 11 10 14 14 C 1.38287 * 119.98275 * 0.02562 * 12 11 10 15 15 C 1.37967 * 119.96363 * 359.92607 * 14 12 11 16 16 C 1.38285 * 121.47274 * 17.68472 * 10 9 8 17 17 O 1.35851 * 121.78487 * 359.71974 * 16 10 9 18 18 C 1.46503 * 120.00065 * 264.47940 * 3 2 1 19 19 C 1.53943 * 113.74014 * 31.98244 * 18 3 2 20 20 N 1.47816 * 86.03641 * 222.08408 * 19 18 3 21 21 C 1.36931 * 134.45675 * 204.65116 * 20 19 18 22 22 H 1.08000 * 120.00342 * 184.64655 * 21 20 19 23 23 C 1.38812 * 120.00129 * 4.63435 * 21 20 19 24 24 N 1.31624 * 119.99904 * 5.33082 * 23 21 20 25 25 Si 1.86803 * 119.99982 * 185.32202 * 23 21 20 26 26 H 1.48503 * 109.46971 * 95.00174 * 25 23 21 27 27 H 1.48503 * 109.46887 * 214.99935 * 25 23 21 28 28 H 1.48495 * 109.47398 * 335.00152 * 25 23 21 29 29 C 1.47582 * 91.04809 * 24.55270 * 20 19 18 30 30 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47126 * 299.99268 * 1 2 3 32 32 H 1.09004 * 109.47272 * 59.99942 * 1 2 3 33 33 H 1.09005 * 109.47340 * 240.00290 * 2 1 3 34 34 H 1.08997 * 109.47522 * 120.00345 * 2 1 3 35 35 H 1.09007 * 109.69594 * 64.76676 * 8 6 4 36 36 H 1.08992 * 109.70056 * 304.16670 * 8 6 4 37 37 H 1.08998 * 109.43101 * 71.87551 * 9 8 6 38 38 H 1.09001 * 109.43095 * 191.79077 * 9 8 6 39 39 H 1.08000 * 119.86260 * 0.15486 * 11 10 9 40 40 H 1.08996 * 109.47092 * 270.02019 * 13 12 11 41 41 H 1.08998 * 109.47547 * 30.02158 * 13 12 11 42 42 H 1.09004 * 109.47327 * 150.02403 * 13 12 11 43 43 H 1.08003 * 120.01891 * 179.97438 * 14 12 11 44 44 H 1.07997 * 119.89841 * 179.97438 * 15 14 12 45 45 H 1.08995 * 112.94394 * 163.57861 * 18 3 2 46 46 H 1.08997 * 113.77353 * 336.34989 * 19 18 3 47 47 H 1.09008 * 113.76716 * 107.74998 * 19 18 3 48 48 H 0.96999 * 119.99966 * 179.97438 * 24 23 21 49 49 H 1.09004 * 113.76475 * 221.15308 * 29 20 19 50 50 H 1.08994 * 113.76993 * 89.75770 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1370 2.0540 1.1618 5 8 1.9179 1.4912 2.2136 6 6 2.5420 3.5055 1.1540 7 1 3.4586 3.6283 0.5770 8 6 1.4229 4.3509 0.5323 9 6 1.9108 5.7988 0.4374 10 6 2.5105 6.2189 1.7553 11 6 2.6722 7.5713 2.0120 12 6 3.2212 7.9928 3.2071 13 6 3.3945 9.4648 3.4792 14 6 3.6127 7.0636 4.1535 15 6 3.4531 5.7162 3.9036 16 6 2.8981 5.2879 2.7016 17 8 2.7531 3.9533 2.4937 18 6 2.3775 2.0312 -1.2629 19 6 1.5383 1.5587 -2.4638 20 7 2.8089 1.5543 -3.2191 21 6 3.1376 1.6658 -4.5436 22 1 4.1656 1.5561 -4.8561 23 6 2.1495 1.9195 -5.4850 24 7 0.9148 2.1570 -5.0955 25 14 2.5721 1.9241 -7.3046 26 1 2.2837 0.5872 -7.8831 27 1 1.7550 2.9510 -7.9998 28 1 4.0132 2.2379 -7.4773 29 6 3.5806 1.3841 -1.9726 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5338 4.3031 1.1611 36 1 1.1895 3.9758 -0.4641 37 1 2.6649 5.8768 -0.3456 38 1 1.0700 6.4497 0.1976 39 1 2.3677 8.2988 1.2742 40 1 4.3739 9.7868 3.1253 41 1 2.6178 10.0246 2.9581 42 1 3.3173 9.6478 4.5510 43 1 4.0425 7.3926 5.0882 44 1 3.7596 4.9915 4.6433 45 1 2.4497 3.1154 -1.1773 46 1 1.1018 0.5686 -2.3324 47 1 0.8193 2.2987 -2.8156 48 1 0.2244 2.3346 -5.7532 49 1 4.4892 1.9849 -1.9331 50 1 3.7454 0.3426 -1.6967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950883199.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:39 Heat of formation + Delta-G solvation = -4.828771 kcal Electronic energy + Delta-G solvation = -30988.103083 eV Core-core repulsion = 26981.784301 eV Total energy + Delta-G solvation = -4006.318782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.23861 -41.04992 -39.48670 -38.55932 -36.14506 -35.42541 -34.00166 -33.34635 -32.29114 -31.09050 -29.44028 -28.42823 -26.69904 -26.59957 -25.26442 -24.56553 -24.12337 -23.27728 -21.75051 -20.75625 -19.93024 -19.16950 -18.84180 -18.32087 -17.61276 -17.04412 -16.74946 -16.70089 -16.08491 -15.76069 -15.62562 -15.40757 -15.22865 -14.96485 -14.82164 -14.62430 -14.36443 -14.21847 -14.01929 -13.75300 -13.67326 -13.58309 -13.33803 -13.14529 -13.04486 -12.88016 -12.71173 -12.59099 -12.45474 -12.30310 -12.13885 -12.03650 -11.98642 -11.92864 -11.86960 -11.50962 -11.40873 -10.90453 -10.74346 -9.73790 -9.71122 -8.98377 -8.91234 -7.89123 -5.24073 0.35909 0.42277 1.34480 1.44408 1.49310 1.51442 1.58795 2.35884 2.52771 2.74634 3.16410 3.28836 3.43486 3.48061 3.65041 3.73597 3.76956 3.81367 4.02756 4.05313 4.10806 4.21151 4.24034 4.34253 4.36576 4.40480 4.51226 4.52051 4.56462 4.74530 4.77285 4.82977 4.84129 4.85671 4.90290 4.93776 4.95673 4.99053 5.13246 5.19300 5.22767 5.29294 5.33922 5.36508 5.47138 5.50169 5.55788 5.69094 5.87946 5.93043 6.25095 6.42385 6.92062 6.97666 7.60716 8.52563 9.25613 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011941 B = 0.003061 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.211686 B = 9146.529212 C =10822.898893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 N -0.584 5.584 4 C 0.525 3.475 5 O -0.561 6.561 6 C 0.078 3.922 7 H 0.107 0.893 8 C -0.148 4.148 9 C -0.074 4.074 10 C -0.163 4.163 11 C -0.091 4.091 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.090 4.090 15 C -0.157 4.157 16 C 0.098 3.902 17 O -0.314 6.314 18 C 0.099 3.901 19 C 0.153 3.847 20 N -0.632 5.632 21 C -0.232 4.232 22 H 0.083 0.917 23 C -0.058 4.058 24 N -0.944 5.944 25 Si 0.973 3.027 26 H -0.292 1.292 27 H -0.294 1.294 28 H -0.268 1.268 29 C 0.108 3.892 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.152 0.848 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.036 0.964 47 H 0.059 0.941 48 H 0.249 0.751 49 H 0.063 0.937 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 10.788 15.364 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.010 4.010 3 N -0.317 5.317 4 C 0.313 3.687 5 O -0.439 6.439 6 C 0.019 3.981 7 H 0.124 0.876 8 C -0.185 4.185 9 C -0.110 4.110 10 C -0.164 4.164 11 C -0.109 4.109 12 C -0.122 4.122 13 C -0.163 4.163 14 C -0.108 4.108 15 C -0.176 4.176 16 C 0.053 3.947 17 O -0.228 6.228 18 C -0.005 4.005 19 C 0.027 3.973 20 N -0.359 5.359 21 C -0.360 4.360 22 H 0.101 0.899 23 C -0.251 4.251 24 N -0.592 5.592 25 Si 0.802 3.198 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.193 1.193 29 C -0.018 4.018 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.162 0.838 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.170 0.830 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.054 0.946 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.844 10.378 15.722 19.052 hybrid contribution -0.094 -0.555 -1.361 1.473 sum 2.750 9.822 14.361 17.615 Atomic orbital electron populations 1.22101 0.94999 1.03190 1.01552 1.21484 0.95159 0.81327 1.03027 1.48009 1.63779 1.14315 1.05576 1.20210 0.77039 0.87955 0.83504 1.90667 1.51389 1.70123 1.31744 1.22237 1.01024 0.91618 0.83248 0.87571 1.22288 0.97194 0.96119 1.02943 1.20537 1.01800 0.94716 0.93977 1.20036 1.04641 0.94189 0.97525 1.21096 0.98446 0.93865 0.97450 1.20184 1.00217 0.97605 0.94191 1.20765 1.02918 0.89524 1.03110 1.21101 0.98713 0.90810 1.00149 1.20789 1.03050 0.97321 0.96399 1.19044 0.97957 0.81667 0.96007 1.85993 1.87690 1.21233 1.27918 1.23942 0.97197 0.98358 0.80983 1.22717 0.90470 0.98415 0.85726 1.45963 1.03805 1.84846 1.01303 1.19302 0.93934 1.41129 0.81668 0.89906 1.25508 0.95665 1.02225 1.01751 1.69955 1.01406 1.54589 1.33284 0.85143 0.77663 0.76775 0.80233 1.21922 1.22073 1.19291 1.23148 0.95430 0.98537 0.84683 0.89777 0.93430 0.92653 0.89620 0.90288 0.90640 0.88162 0.89021 0.87697 0.83760 0.90513 0.90831 0.90502 0.82986 0.85169 0.85577 0.94648 0.92318 0.94162 0.91922 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 9.95 71.98 0.72 -3.73 16 2 C 0.11 3.29 5.16 86.38 0.45 3.74 16 3 N -0.58 -18.26 2.70 -803.51 -2.17 -20.43 16 4 C 0.53 17.49 7.02 87.66 0.62 18.10 16 5 O -0.56 -22.25 16.17 15.82 0.26 -21.99 16 6 C 0.08 2.28 2.34 29.99 0.07 2.35 16 7 H 0.11 2.84 7.54 -2.39 -0.02 2.82 16 8 C -0.15 -3.76 5.03 30.76 0.15 -3.61 16 9 C -0.07 -1.58 5.86 29.89 0.18 -1.41 16 10 C -0.16 -3.86 5.75 -19.75 -0.11 -3.98 16 11 C -0.09 -1.76 9.32 22.32 0.21 -1.55 16 12 C -0.12 -2.13 5.88 -19.88 -0.12 -2.25 16 13 C -0.11 -1.18 10.01 71.24 0.71 -0.46 16 14 C -0.09 -1.67 9.70 22.22 0.22 -1.46 16 15 C -0.16 -3.77 9.94 22.42 0.22 -3.55 16 16 C 0.10 2.71 6.47 22.50 0.15 2.85 16 17 O -0.31 -10.14 9.47 -73.03 -0.69 -10.83 16 18 C 0.10 3.30 3.43 46.75 0.16 3.46 16 19 C 0.15 6.42 6.57 86.44 0.57 6.98 16 20 N -0.63 -29.48 3.70 -716.69 -2.65 -32.13 16 21 C -0.23 -12.11 10.69 84.03 0.90 -11.21 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 23 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 24 N -0.94 -52.87 11.29 21.65 0.24 -52.62 16 25 Si 0.97 43.32 29.56 68.60 2.03 45.35 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 C 0.11 3.94 8.47 86.49 0.73 4.67 16 30 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.66 6.79 -2.38 -0.02 1.64 16 33 H 0.09 2.54 6.20 -2.38 -0.01 2.52 16 34 H 0.08 2.32 7.53 -2.39 -0.02 2.30 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.10 2.60 5.73 -2.39 -0.01 2.58 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 42 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16 43 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 45 H 0.13 3.89 4.61 -2.39 -0.01 3.88 16 46 H 0.04 1.51 5.37 -2.39 -0.01 1.49 16 47 H 0.06 2.81 6.87 -2.38 -0.02 2.80 16 48 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 49 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.05 1.71 7.41 -2.39 -0.02 1.69 16 Total: -1.00 -67.04 392.83 4.24 -62.79 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.94 Total: 23.51 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 6.28 Total: 6.35 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -4.57 Total: -105.18 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.44 Total: -32.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.04 4.24 -62.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950883199.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.965 kcal (2) G-P(sol) polarization free energy of solvation -67.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds