Wall clock time and date at job start Wed Apr 1 2020 03:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47113 * 2 1 4 4 C 1.34778 * 119.99871 * 108.76073 * 3 2 1 5 5 O 1.21584 * 120.00183 * 179.52258 * 4 3 2 6 6 C 1.47534 * 120.00005 * 359.52768 * 4 3 2 7 7 C 1.39717 * 120.19043 * 327.17935 * 6 4 3 8 8 C 1.37782 * 119.90355 * 179.69926 * 7 6 4 9 9 C 1.38548 * 120.30638 * 0.29823 * 8 7 6 10 10 C 1.38063 * 120.38920 * 359.97438 * 9 8 7 11 11 C 1.38703 * 120.08075 * 359.97438 * 10 9 8 12 12 O 1.35653 * 120.15054 * 179.97438 * 11 10 9 13 13 C 1.42906 * 116.99529 * 358.42486 * 12 11 10 14 14 C 1.53780 * 113.61840 * 255.25624 * 13 12 11 15 15 C 1.53775 * 87.08295 * 220.02042 * 14 13 12 16 16 C 1.53783 * 87.08088 * 25.43638 * 15 14 13 17 17 C 1.46492 * 120.00139 * 288.77016 * 3 2 1 18 18 C 1.53948 * 113.74026 * 223.48165 * 17 3 2 19 19 N 1.47817 * 86.03399 * 222.08266 * 18 17 3 20 20 C 1.36941 * 134.45185 * 204.64343 * 19 18 17 21 21 H 1.08001 * 119.99720 * 184.72402 * 20 19 18 22 22 C 1.38812 * 120.00439 * 4.71994 * 20 19 18 23 23 N 1.31629 * 119.99578 * 5.21527 * 22 20 19 24 24 Si 1.86795 * 120.00337 * 185.21505 * 22 20 19 25 25 H 1.48500 * 109.47195 * 94.99391 * 24 22 20 26 26 H 1.48499 * 109.47383 * 214.99763 * 24 22 20 27 27 H 1.48503 * 109.46978 * 334.99444 * 24 22 20 28 28 C 1.47578 * 91.05227 * 24.54711 * 19 18 17 29 29 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47392 * 299.99598 * 1 2 3 31 31 H 1.08998 * 109.47445 * 60.00048 * 1 2 3 32 32 H 1.08998 * 109.46962 * 240.00547 * 2 1 3 33 33 H 1.08998 * 109.47445 * 119.99952 * 2 1 3 34 34 H 1.07990 * 120.04327 * 359.97109 * 7 6 4 35 35 H 1.08001 * 119.84697 * 180.27508 * 8 7 6 36 36 H 1.07998 * 119.80901 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.95810 * 180.02562 * 10 9 8 38 38 H 1.09002 * 112.85107 * 26.57195 * 13 12 11 39 39 H 1.09006 * 113.60969 * 334.57424 * 14 13 12 40 40 H 1.09003 * 113.61008 * 105.46868 * 14 13 12 41 41 H 1.08994 * 113.62020 * 270.88293 * 15 14 13 42 42 H 1.09007 * 113.60998 * 139.98054 * 15 14 13 43 43 H 1.09001 * 113.61293 * 220.01759 * 16 15 14 44 44 H 1.09000 * 113.69496 * 89.12856 * 16 15 14 45 45 H 1.09005 * 112.94979 * 355.07298 * 17 3 2 46 46 H 1.08993 * 113.76934 * 336.34317 * 18 17 3 47 47 H 1.09003 * 113.77085 * 107.74636 * 18 17 3 48 48 H 0.97001 * 119.99801 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.76660 * 221.14639 * 28 19 18 50 50 H 1.08997 * 113.76360 * 89.75566 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5969 1.8914 1.1052 5 8 3.0100 3.0349 1.1025 6 6 2.7290 1.0623 2.3184 7 6 1.7578 0.1058 2.6249 8 6 1.8902 -0.6695 3.7561 9 6 2.9796 -0.5013 4.5954 10 6 3.9438 0.4441 4.3074 11 6 3.8270 1.2326 3.1723 12 8 4.7732 2.1622 2.8883 13 6 5.8474 2.3003 3.8206 14 6 5.7393 3.5546 4.7037 15 6 7.2596 3.7101 4.5327 16 6 7.1117 2.9322 3.2144 17 6 1.8776 2.2079 -1.2012 18 6 3.1340 3.0316 -1.5373 19 7 2.2022 4.1392 -1.8375 20 6 2.2633 5.2565 -2.6269 21 1 1.4522 5.9696 -2.6171 22 6 3.3677 5.4727 -3.4396 23 7 4.3079 4.5560 -3.5298 24 14 3.5196 7.0646 -4.4052 25 1 4.3399 8.0340 -3.6355 26 1 4.1716 6.7912 -5.7110 27 1 2.1677 7.6340 -4.6366 28 6 1.1796 3.5563 -0.9474 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9068 -0.0285 1.9738 35 1 1.1412 -1.4117 3.9898 36 1 3.0752 -1.1131 5.4802 37 1 4.7903 0.5691 4.9663 38 1 6.0420 1.3857 4.3807 39 1 5.1639 4.3608 4.2485 40 1 5.4346 3.3421 5.7285 41 1 7.8404 3.1818 5.2887 42 1 7.5803 4.7430 4.3965 43 1 7.9150 2.2172 3.0369 44 1 6.9118 3.5670 2.3513 45 1 1.4734 1.6577 -2.0509 46 1 3.7784 3.2202 -0.6787 47 1 3.6790 2.6663 -2.4077 48 1 5.0795 4.7069 -4.0980 49 1 0.1671 3.6092 -1.3476 50 1 1.2487 3.8994 0.0849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951715838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:37 Heat of formation + Delta-G solvation = 73.864379 kcal Electronic energy + Delta-G solvation = -31409.925441 eV Core-core repulsion = 27407.019050 eV Total energy + Delta-G solvation = -4002.906391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87244 -39.75203 -38.37148 -36.52086 -36.44512 -35.26461 -32.11443 -31.07335 -30.35008 -29.74300 -27.27515 -25.80944 -25.60980 -24.54620 -24.24307 -23.31718 -22.55665 -22.08160 -20.28828 -19.72266 -18.84837 -18.04996 -16.84176 -16.46872 -16.32351 -15.80874 -15.48723 -15.40492 -14.92855 -14.75339 -14.59799 -14.44449 -14.02424 -13.82917 -13.51814 -13.29282 -12.87088 -12.57941 -12.52471 -12.36374 -12.22939 -12.07981 -11.81071 -11.61202 -11.55865 -11.42922 -11.29361 -11.19049 -11.07923 -10.89438 -10.75728 -10.53206 -10.49363 -10.35544 -9.96818 -9.82646 -9.38140 -9.17971 -8.89107 -8.49434 -8.22922 -7.90882 -6.62190 -5.59074 -2.90837 0.92377 1.30651 3.13694 3.20863 3.37718 3.49123 3.54217 3.55465 3.84099 4.37508 4.40972 4.50861 4.58894 4.62260 4.67446 4.74273 4.85605 4.95512 5.02409 5.17391 5.22798 5.29875 5.37903 5.44554 5.47994 5.55007 5.64710 5.66496 5.67248 5.73924 5.78023 5.81599 5.84941 5.88874 5.91676 6.01700 6.09024 6.15786 6.21620 6.25591 6.32713 6.49789 6.62238 6.75021 6.79026 7.10488 7.45267 7.48900 7.74952 7.80764 7.98009 8.16260 8.79549 9.21010 9.87580 10.80467 11.56652 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009629 B = 0.003937 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.208033 B = 7110.509726 C = 9551.383901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 N -0.598 5.598 4 C 0.553 3.447 5 O -0.493 6.493 6 C -0.163 4.163 7 C -0.068 4.068 8 C -0.174 4.174 9 C -0.061 4.061 10 C -0.225 4.225 11 C 0.185 3.815 12 O -0.269 6.269 13 C 0.046 3.954 14 C -0.153 4.153 15 C -0.140 4.140 16 C -0.130 4.130 17 C 0.094 3.906 18 C 0.146 3.854 19 N -0.603 5.603 20 C -0.213 4.213 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.910 3.090 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.114 3.886 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.251 0.749 49 H 0.035 0.965 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.069 -15.220 18.892 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.045 4.045 3 N -0.332 5.332 4 C 0.340 3.660 5 O -0.368 6.368 6 C -0.167 4.167 7 C -0.086 4.086 8 C -0.192 4.192 9 C -0.079 4.079 10 C -0.244 4.244 11 C 0.136 3.864 12 O -0.180 6.180 13 C -0.010 4.010 14 C -0.191 4.191 15 C -0.178 4.178 16 C -0.168 4.168 17 C -0.009 4.009 18 C 0.021 3.979 19 N -0.329 5.329 20 C -0.341 4.341 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.014 4.014 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.669 -14.208 18.442 23.290 hybrid contribution 0.150 0.642 -0.245 0.703 sum -0.520 -13.566 18.197 22.703 Atomic orbital electron populations 1.22259 0.96060 1.01960 1.03004 1.22168 0.94366 0.84141 1.03833 1.47987 1.59339 1.12749 1.13139 1.17952 0.78694 0.86887 0.82430 1.90871 1.46209 1.17336 1.82345 1.19527 0.96633 1.02220 0.98348 1.21836 0.98107 0.92387 0.96301 1.20964 0.99699 1.02521 0.96045 1.21042 0.92919 0.95657 0.98301 1.21195 1.02805 1.01074 0.99307 1.19024 0.88202 0.87340 0.91793 1.86453 1.32236 1.52257 1.47023 1.24326 0.87015 0.98061 0.91630 1.23486 0.97145 0.98717 0.99749 1.22646 0.96146 1.01483 0.97490 1.23179 0.95054 0.99711 0.98814 1.23988 1.02064 0.89826 0.85051 1.22902 0.91592 0.84559 0.98895 1.45613 1.13071 1.26072 1.48187 1.18992 1.03401 0.97040 1.14701 0.90509 1.24748 0.97278 0.98411 1.00162 1.69849 1.11287 1.33167 1.42288 0.86126 0.77527 0.83150 0.79158 1.21800 1.21813 1.20657 1.22905 0.92972 0.90293 0.95180 0.91635 0.92178 0.91478 0.91095 0.88564 0.83092 0.85550 0.85741 0.85031 0.88436 0.88461 0.91160 0.89976 0.90284 0.90653 0.88150 0.88035 0.92430 0.91038 0.93911 0.94724 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.22 37.16 0.34 -1.41 16 2 C 0.08 0.95 5.61 -4.04 -0.02 0.93 16 3 N -0.60 -10.33 2.79 -169.13 -0.47 -10.80 16 4 C 0.55 10.57 6.73 -12.47 -0.08 10.49 16 5 O -0.49 -11.73 11.54 -13.25 -0.15 -11.89 16 6 C -0.16 -2.52 5.44 -104.84 -0.57 -3.09 16 7 C -0.07 -0.79 7.35 -39.20 -0.29 -1.08 16 8 C -0.17 -1.63 10.02 -39.63 -0.40 -2.03 16 9 C -0.06 -0.56 10.03 -39.53 -0.40 -0.96 16 10 C -0.23 -2.50 9.08 -39.47 -0.36 -2.86 16 11 C 0.18 2.74 6.67 -38.70 -0.26 2.48 16 12 O -0.27 -4.43 8.71 -37.20 -0.32 -4.76 16 13 C 0.05 0.55 3.82 -25.92 -0.10 0.45 16 14 C -0.15 -1.68 7.91 -25.92 -0.21 -1.88 16 15 C -0.14 -1.30 8.08 -25.92 -0.21 -1.51 16 16 C -0.13 -1.50 7.91 -25.92 -0.21 -1.70 16 17 C 0.09 1.95 4.27 -70.15 -0.30 1.66 16 18 C 0.15 3.87 6.99 -2.83 -0.02 3.85 16 19 N -0.60 -17.07 3.70 -177.88 -0.66 -17.73 16 20 C -0.21 -6.46 10.69 -15.06 -0.16 -6.62 16 21 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.92 -28.87 11.29 55.49 0.63 -28.25 16 24 Si 0.91 23.40 29.56 -169.99 -5.02 18.38 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.11 2.66 8.27 -2.97 -0.02 2.63 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.60 6.91 -51.93 -0.36 0.24 16 31 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.05 4.04 -51.93 -0.21 0.84 16 34 H 0.15 1.52 3.43 -52.49 -0.18 1.34 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 1.17 5.74 -52.49 -0.30 0.87 16 38 H 0.10 0.92 5.71 -51.93 -0.30 0.63 16 39 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.10 1.96 8.07 -51.93 -0.42 1.54 16 46 H 0.06 1.67 5.56 -51.93 -0.29 1.38 16 47 H 0.07 2.06 6.87 -51.93 -0.36 1.70 16 48 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.05 1.15 6.43 -51.93 -0.33 0.82 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -36.93 388.79 -10.85 -47.78 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.36 Total: 2.43 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -3.35 Total: -1.03 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.50 Total: -56.77 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.48 Total: -16.64 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.93 -10.85 -47.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951715838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.645 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds