Wall clock time and date at job start Wed Apr 1 2020 03:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47113 * 2 1 4 4 C 1.34778 * 119.99871 * 108.76073 * 3 2 1 5 5 O 1.21584 * 120.00183 * 179.52258 * 4 3 2 6 6 C 1.47534 * 120.00005 * 359.52768 * 4 3 2 7 7 C 1.39717 * 120.19043 * 327.17935 * 6 4 3 8 8 C 1.37782 * 119.90355 * 179.69926 * 7 6 4 9 9 C 1.38548 * 120.30638 * 0.29823 * 8 7 6 10 10 C 1.38063 * 120.38920 * 359.97438 * 9 8 7 11 11 C 1.38703 * 120.08075 * 359.97438 * 10 9 8 12 12 O 1.35653 * 120.15054 * 179.97438 * 11 10 9 13 13 C 1.42906 * 116.99529 * 358.42486 * 12 11 10 14 14 C 1.53780 * 113.61840 * 255.25624 * 13 12 11 15 15 C 1.53775 * 87.08295 * 220.02042 * 14 13 12 16 16 C 1.53783 * 87.08088 * 25.43638 * 15 14 13 17 17 C 1.46492 * 120.00139 * 288.77016 * 3 2 1 18 18 C 1.53948 * 113.74026 * 223.48165 * 17 3 2 19 19 N 1.47817 * 86.03399 * 222.08266 * 18 17 3 20 20 C 1.36941 * 134.45185 * 204.64343 * 19 18 17 21 21 H 1.08001 * 119.99720 * 184.72402 * 20 19 18 22 22 C 1.38812 * 120.00439 * 4.71994 * 20 19 18 23 23 N 1.31629 * 119.99578 * 5.21527 * 22 20 19 24 24 Si 1.86795 * 120.00337 * 185.21505 * 22 20 19 25 25 H 1.48500 * 109.47195 * 94.99391 * 24 22 20 26 26 H 1.48499 * 109.47383 * 214.99763 * 24 22 20 27 27 H 1.48503 * 109.46978 * 334.99444 * 24 22 20 28 28 C 1.47578 * 91.05227 * 24.54711 * 19 18 17 29 29 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47392 * 299.99598 * 1 2 3 31 31 H 1.08998 * 109.47445 * 60.00048 * 1 2 3 32 32 H 1.08998 * 109.46962 * 240.00547 * 2 1 3 33 33 H 1.08998 * 109.47445 * 119.99952 * 2 1 3 34 34 H 1.07990 * 120.04327 * 359.97109 * 7 6 4 35 35 H 1.08001 * 119.84697 * 180.27508 * 8 7 6 36 36 H 1.07998 * 119.80901 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.95810 * 180.02562 * 10 9 8 38 38 H 1.09002 * 112.85107 * 26.57195 * 13 12 11 39 39 H 1.09006 * 113.60969 * 334.57424 * 14 13 12 40 40 H 1.09003 * 113.61008 * 105.46868 * 14 13 12 41 41 H 1.08994 * 113.62020 * 270.88293 * 15 14 13 42 42 H 1.09007 * 113.60998 * 139.98054 * 15 14 13 43 43 H 1.09001 * 113.61293 * 220.01759 * 16 15 14 44 44 H 1.09000 * 113.69496 * 89.12856 * 16 15 14 45 45 H 1.09005 * 112.94979 * 355.07298 * 17 3 2 46 46 H 1.08993 * 113.76934 * 336.34317 * 18 17 3 47 47 H 1.09003 * 113.77085 * 107.74636 * 18 17 3 48 48 H 0.97001 * 119.99801 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.76660 * 221.14639 * 28 19 18 50 50 H 1.08997 * 113.76360 * 89.75566 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.5969 1.8914 1.1052 5 8 3.0100 3.0349 1.1025 6 6 2.7290 1.0623 2.3184 7 6 1.7578 0.1058 2.6249 8 6 1.8902 -0.6695 3.7561 9 6 2.9796 -0.5013 4.5954 10 6 3.9438 0.4441 4.3074 11 6 3.8270 1.2326 3.1723 12 8 4.7732 2.1622 2.8883 13 6 5.8474 2.3003 3.8206 14 6 5.7393 3.5546 4.7037 15 6 7.2596 3.7101 4.5327 16 6 7.1117 2.9322 3.2144 17 6 1.8776 2.2079 -1.2012 18 6 3.1340 3.0316 -1.5373 19 7 2.2022 4.1392 -1.8375 20 6 2.2633 5.2565 -2.6269 21 1 1.4522 5.9696 -2.6171 22 6 3.3677 5.4727 -3.4396 23 7 4.3079 4.5560 -3.5298 24 14 3.5196 7.0646 -4.4052 25 1 4.3399 8.0340 -3.6355 26 1 4.1716 6.7912 -5.7110 27 1 2.1677 7.6340 -4.6366 28 6 1.1796 3.5563 -0.9474 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9068 -0.0285 1.9738 35 1 1.1412 -1.4117 3.9898 36 1 3.0752 -1.1131 5.4802 37 1 4.7903 0.5691 4.9663 38 1 6.0420 1.3857 4.3807 39 1 5.1639 4.3608 4.2485 40 1 5.4346 3.3421 5.7285 41 1 7.8404 3.1818 5.2887 42 1 7.5803 4.7430 4.3965 43 1 7.9150 2.2172 3.0369 44 1 6.9118 3.5670 2.3513 45 1 1.4734 1.6577 -2.0509 46 1 3.7784 3.2202 -0.6787 47 1 3.6790 2.6663 -2.4077 48 1 5.0795 4.7069 -4.0980 49 1 0.1671 3.6092 -1.3476 50 1 1.2487 3.8994 0.0849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951715838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:36 Heat of formation + Delta-G solvation = 50.861971 kcal Electronic energy + Delta-G solvation = -31410.922900 eV Core-core repulsion = 27407.019050 eV Total energy + Delta-G solvation = -4003.903850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.02868 -41.01319 -39.49100 -38.22726 -37.47760 -36.53254 -34.23590 -32.20007 -31.48997 -30.72568 -29.28934 -26.72760 -26.59091 -26.50644 -25.76719 -24.60834 -23.59382 -23.19062 -21.88275 -20.73359 -20.15167 -19.11499 -18.78157 -18.00437 -17.41324 -17.00211 -16.78677 -16.66962 -16.40561 -15.98008 -15.90660 -15.58823 -15.53211 -15.15998 -14.79170 -14.36632 -14.31331 -13.98968 -13.69807 -13.57015 -13.49192 -13.44673 -13.07626 -12.93034 -12.84064 -12.70161 -12.68652 -12.49209 -12.43540 -12.25250 -12.01834 -11.96662 -11.89892 -11.71235 -11.50525 -11.38488 -11.22794 -10.98827 -10.42987 -9.85922 -9.49356 -9.13351 -8.88244 -7.90535 -5.26471 -0.00857 0.44267 1.39554 1.44348 1.52934 1.89659 2.04286 2.28697 2.47275 2.82556 3.25602 3.47749 3.49243 3.54196 3.58961 3.68161 3.79531 3.84345 3.89482 4.02763 4.11066 4.18940 4.25555 4.38259 4.42386 4.52071 4.53790 4.57337 4.65945 4.69565 4.71554 4.80641 4.86099 4.89359 4.95082 4.96508 4.98945 5.02391 5.04431 5.22191 5.25683 5.32062 5.36194 5.38376 5.42762 5.48477 5.52252 5.85236 5.89493 5.93195 6.48218 6.62713 6.88240 7.37587 7.57641 8.56513 9.25123 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009629 B = 0.003937 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.208033 B = 7110.509726 C = 9551.383901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 N -0.597 5.597 4 C 0.545 3.455 5 O -0.558 6.558 6 C -0.199 4.199 7 C -0.067 4.067 8 C -0.162 4.162 9 C -0.047 4.047 10 C -0.224 4.224 11 C 0.155 3.845 12 O -0.315 6.315 13 C 0.039 3.961 14 C -0.155 4.155 15 C -0.122 4.122 16 C -0.143 4.143 17 C 0.130 3.870 18 C 0.144 3.856 19 N -0.631 5.631 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.952 5.952 24 Si 0.984 3.016 25 H -0.292 1.292 26 H -0.287 1.287 27 H -0.262 1.262 28 C 0.118 3.882 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.131 0.869 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.124 0.876 46 H 0.024 0.976 47 H 0.040 0.960 48 H 0.248 0.752 49 H 0.058 0.942 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 -18.389 21.426 28.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.050 4.050 3 N -0.329 5.329 4 C 0.335 3.665 5 O -0.437 6.437 6 C -0.203 4.203 7 C -0.084 4.084 8 C -0.180 4.180 9 C -0.065 4.065 10 C -0.243 4.243 11 C 0.107 3.893 12 O -0.227 6.227 13 C -0.016 4.016 14 C -0.193 4.193 15 C -0.159 4.159 16 C -0.180 4.180 17 C 0.026 3.974 18 C 0.018 3.982 19 N -0.357 5.357 20 C -0.366 4.366 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.811 3.189 25 H -0.220 1.220 26 H -0.213 1.213 27 H -0.186 1.186 28 C -0.009 4.009 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.183 0.817 35 H 0.185 0.815 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.148 0.852 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.142 0.858 46 H 0.042 0.958 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.076 0.924 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.251 -17.439 20.999 27.389 hybrid contribution 0.627 1.538 -0.909 1.893 sum -1.624 -15.901 20.090 25.673 Atomic orbital electron populations 1.22228 0.93749 1.04227 1.02443 1.22555 0.96167 0.80953 1.05276 1.47992 1.59145 1.14421 1.11371 1.18730 0.77300 0.86599 0.83821 1.90830 1.48816 1.20312 1.83710 1.19440 0.99133 1.04134 0.97545 1.22013 0.97304 0.91534 0.97596 1.21454 1.00262 1.01894 0.94350 1.21599 0.91463 0.94360 0.99046 1.21485 1.04176 1.00590 0.98010 1.19439 0.88215 0.88228 0.93385 1.86416 1.33688 1.53563 1.49074 1.24666 0.85941 0.99592 0.91444 1.23428 0.98058 0.97296 1.00526 1.22663 0.95220 1.01445 0.96558 1.23201 0.96060 1.00107 0.98657 1.23286 0.97354 0.89665 0.87113 1.22665 0.93142 0.86126 0.96238 1.46027 1.14819 1.26190 1.48679 1.19446 1.03909 0.98141 1.15090 0.90077 1.25718 0.96857 1.02048 1.01510 1.70074 1.11709 1.35167 1.43107 0.84985 0.78144 0.78450 0.77304 1.21990 1.21292 1.18643 1.22914 0.93242 0.91299 0.93415 0.87867 0.92109 0.92717 0.90213 0.86656 0.81701 0.81468 0.81514 0.82837 0.85197 0.92187 0.88605 0.86417 0.90572 0.88902 0.92467 0.85791 0.95805 0.94133 0.94326 0.92433 0.95344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.22 71.98 0.66 -2.22 16 2 C 0.07 1.62 5.61 86.38 0.48 2.11 16 3 N -0.60 -21.20 2.79 -807.27 -2.26 -23.46 16 4 C 0.55 22.21 6.73 86.69 0.58 22.79 16 5 O -0.56 -29.31 11.54 13.75 0.16 -29.15 16 6 C -0.20 -6.21 5.44 -20.01 -0.11 -6.31 16 7 C -0.07 -1.37 7.35 22.52 0.17 -1.21 16 8 C -0.16 -2.22 10.02 22.24 0.22 -2.00 16 9 C -0.05 -0.63 10.03 22.30 0.22 -0.41 16 10 C -0.22 -4.40 9.08 22.34 0.20 -4.19 16 11 C 0.15 4.67 6.67 22.84 0.15 4.82 16 12 O -0.31 -11.28 8.71 -71.96 -0.63 -11.91 16 13 C 0.04 0.97 3.82 31.12 0.12 1.08 16 14 C -0.16 -3.52 7.91 31.12 0.25 -3.28 16 15 C -0.12 -2.24 8.08 31.12 0.25 -1.99 16 16 C -0.14 -3.55 7.91 31.12 0.25 -3.30 16 17 C 0.13 5.65 4.27 46.75 0.20 5.85 16 18 C 0.14 8.26 6.99 86.44 0.60 8.87 16 19 N -0.63 -37.70 3.70 -716.69 -2.65 -40.35 16 20 C -0.24 -14.98 10.69 84.03 0.90 -14.09 16 21 H 0.08 4.88 7.83 -2.91 -0.02 4.86 16 22 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 23 N -0.95 -62.99 11.29 21.65 0.24 -62.75 16 24 Si 0.98 49.68 29.56 68.60 2.03 51.71 16 25 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 28 C 0.12 5.74 8.27 86.49 0.72 6.46 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.05 6.91 -2.39 -0.02 1.03 16 31 H 0.05 1.10 7.97 -2.39 -0.02 1.08 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.12 2.23 4.04 -2.39 -0.01 2.22 16 34 H 0.17 2.79 3.43 -2.92 -0.01 2.78 16 35 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.15 2.19 5.74 -2.91 -0.02 2.17 16 38 H 0.13 2.24 5.71 -2.39 -0.01 2.22 16 39 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.12 4.81 8.07 -2.38 -0.02 4.79 16 46 H 0.02 1.55 5.56 -2.39 -0.01 1.53 16 47 H 0.04 2.52 6.87 -2.39 -0.02 2.51 16 48 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 49 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.03 1.52 6.43 -2.39 -0.02 1.50 16 Total: -1.00 -91.43 388.79 4.19 -87.24 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.96 Total: 19.51 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.34 Total: 9.16 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -4.66 Total: -126.56 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.47 Total: -41.06 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 2.03 Total: 51.71 kcal Total: -91.43 4.19 -87.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951715838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.104 kcal (2) G-P(sol) polarization free energy of solvation -91.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds