Wall clock time and date at job start Wed Apr 1 2020 03:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46959 * 2 1 4 4 C 1.34781 * 119.99897 * 275.35005 * 3 2 1 5 5 O 1.21282 * 119.99919 * 174.55502 * 4 3 2 6 6 C 1.50705 * 120.00003 * 354.54483 * 4 3 2 7 7 H 1.09000 * 110.26673 * 36.15507 * 6 4 3 8 8 C 1.54346 * 110.30414 * 274.07746 * 6 4 3 9 9 C 1.54353 * 102.37252 * 214.73998 * 8 6 4 10 10 C 1.51375 * 105.16983 * 26.33849 * 9 8 6 11 11 C 1.38547 * 130.36272 * 162.83526 * 10 9 8 12 12 C 1.38129 * 120.33759 * 180.02562 * 11 10 9 13 13 C 1.38166 * 119.99318 * 359.93527 * 12 11 10 14 14 C 1.38603 * 119.87377 * 0.02787 * 13 12 11 15 15 O 1.35900 * 119.94921 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00077 * 0.02562 * 15 14 13 17 17 C 1.38124 * 109.76105 * 342.81534 * 10 9 8 18 18 C 1.46500 * 120.00381 * 95.34523 * 3 2 1 19 19 C 1.53490 * 114.20491 * 59.99922 * 18 3 2 20 20 N 1.47073 * 87.98646 * 220.34751 * 19 18 3 21 21 C 1.36934 * 136.05983 * 207.08561 * 20 19 18 22 22 H 1.08002 * 119.99536 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00132 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00116 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99957 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46889 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.47334 * 299.99789 * 25 23 21 28 28 H 1.48500 * 109.47329 * 59.99577 * 25 23 21 29 29 C 1.47063 * 87.88109 * 27.34128 * 20 19 18 30 30 H 1.08997 * 109.46627 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47622 * 300.00333 * 1 2 3 32 32 H 1.09004 * 109.46763 * 60.00407 * 1 2 3 33 33 H 1.09000 * 109.47176 * 239.99852 * 2 1 3 34 34 H 1.08998 * 109.46910 * 119.99154 * 2 1 3 35 35 H 1.08993 * 110.82593 * 332.95999 * 8 6 4 36 36 H 1.09004 * 110.82537 * 96.32681 * 8 6 4 37 37 H 1.09007 * 110.30030 * 145.26053 * 9 8 6 38 38 H 1.09000 * 110.30656 * 267.41020 * 9 8 6 39 39 H 1.08005 * 119.83266 * 359.97438 * 11 10 9 40 40 H 1.07995 * 120.00525 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.05923 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.46928 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47561 * 300.00323 * 16 15 14 44 44 H 1.09003 * 109.46865 * 60.00656 * 16 15 14 45 45 H 1.09001 * 113.41718 * 193.20540 * 18 3 2 46 46 H 1.08998 * 113.46961 * 105.56888 * 19 18 3 47 47 H 1.09005 * 113.52478 * 335.13618 * 19 18 3 48 48 H 0.96999 * 120.00187 * 179.97438 * 24 23 21 49 49 H 1.09012 * 113.46881 * 87.44217 * 29 20 19 50 50 H 1.09004 * 113.46664 * 217.87528 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1403 2.0529 -1.1622 5 8 2.4494 3.2256 -1.1552 6 6 1.8929 1.3465 -2.4702 7 1 1.0835 0.6245 -2.3622 8 6 3.1793 0.6414 -2.9499 9 6 3.0858 0.7900 -4.4834 10 6 2.2483 2.0303 -4.7108 11 6 2.0979 2.8165 -5.8416 12 6 1.2669 3.9196 -5.8190 13 6 0.5794 4.2429 -4.6649 14 6 0.7261 3.4588 -3.5314 15 8 0.0511 3.7756 -2.3952 16 6 -0.7915 4.9289 -2.4414 17 6 1.5633 2.3497 -3.5547 18 6 2.3739 2.0325 1.2632 19 6 3.4935 1.3276 2.0413 20 7 2.7383 1.6008 3.2734 21 6 3.0415 1.7780 4.5970 22 1 4.0681 1.7226 4.9278 23 6 2.0294 2.0278 5.5135 24 7 0.7783 2.0948 5.1104 25 14 2.4432 2.2702 7.3189 26 1 1.1950 2.5210 8.0834 27 1 3.1081 1.0500 7.8425 28 1 3.3553 3.4327 7.4660 29 6 1.5135 1.5936 2.4594 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 4.0649 1.1469 -2.5649 36 1 3.1772 -0.4090 -2.6585 37 1 4.0795 0.9209 -4.9120 38 1 2.5971 -0.0815 -4.9188 39 1 2.6338 2.5661 -6.7453 40 1 1.1539 4.5290 -6.7034 41 1 -0.0710 5.1049 -4.6461 42 1 -1.2695 5.0686 -1.4719 43 1 -0.1923 5.8074 -2.6808 44 1 -1.5552 4.7904 -3.2068 45 1 2.5029 3.1111 1.1731 46 1 4.4497 1.8485 1.9938 47 1 3.5805 0.2655 1.8121 48 1 0.0710 2.2690 5.7509 49 1 1.0775 0.6017 2.3398 50 1 0.7828 2.3413 2.7681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952415836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:29 Heat of formation + Delta-G solvation = 22.947351 kcal Electronic energy + Delta-G solvation = -31456.039980 eV Core-core repulsion = 27450.925661 eV Total energy + Delta-G solvation = -4005.114319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.98095 -39.57714 -38.28080 -37.42520 -35.31851 -34.84090 -32.10087 -30.83689 -30.07102 -29.43908 -28.09901 -27.15887 -27.04913 -24.55493 -23.51919 -23.28086 -22.52161 -21.52187 -20.95047 -19.52779 -18.30813 -17.58271 -17.35636 -16.63997 -16.42718 -15.86629 -15.58254 -15.48656 -15.03750 -14.67274 -14.49299 -14.19208 -14.04566 -13.84338 -13.57687 -13.17592 -12.80539 -12.72668 -12.67467 -12.48607 -12.16378 -12.03410 -11.90443 -11.71653 -11.57486 -11.45104 -11.28604 -11.24308 -11.09258 -10.96174 -10.91098 -10.85662 -10.76814 -10.68810 -10.15375 -10.06600 -9.39560 -9.27974 -8.80348 -8.65340 -8.11551 -7.97338 -6.88749 -5.77311 -3.10087 1.21733 1.42600 3.03568 3.34931 3.37031 3.41449 3.44773 3.46153 3.69859 4.22915 4.41826 4.47525 4.73835 4.82246 4.85441 5.00539 5.04242 5.10668 5.17372 5.20317 5.26058 5.32129 5.40460 5.42715 5.45073 5.52058 5.52345 5.55763 5.62249 5.68154 5.73128 5.78056 5.87562 5.96886 5.99535 6.04767 6.15969 6.25964 6.30097 6.33958 6.45697 6.46314 6.50913 6.65286 6.73279 6.92050 7.21323 7.42141 7.45279 7.54730 7.93413 7.96784 8.67219 9.02941 9.69273 10.62214 11.40060 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.002889 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.642952 B = 9690.325932 C =10367.981503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 N -0.594 5.594 4 C 0.525 3.475 5 O -0.529 6.529 6 C -0.063 4.063 7 H 0.104 0.896 8 C -0.108 4.108 9 C -0.078 4.078 10 C -0.056 4.056 11 C -0.153 4.153 12 C -0.078 4.078 13 C -0.218 4.218 14 C 0.166 3.834 15 O -0.299 6.299 16 C 0.029 3.971 17 C -0.109 4.109 18 C 0.090 3.910 19 C 0.106 3.894 20 N -0.604 5.604 21 C -0.217 4.217 22 H 0.082 0.918 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.285 1.285 28 H -0.284 1.284 29 C 0.149 3.851 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.116 0.884 46 H 0.041 0.959 47 H 0.033 0.967 48 H 0.254 0.746 49 H 0.033 0.967 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 -2.707 -23.783 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.020 4.020 3 N -0.327 5.327 4 C 0.312 3.688 5 O -0.405 6.405 6 C -0.084 4.084 7 H 0.122 0.878 8 C -0.145 4.145 9 C -0.115 4.115 10 C -0.056 4.056 11 C -0.171 4.171 12 C -0.096 4.096 13 C -0.236 4.236 14 C 0.120 3.880 15 O -0.211 6.211 16 C -0.066 4.066 17 C -0.110 4.110 18 C -0.014 4.014 19 C -0.022 4.022 20 N -0.330 5.330 21 C -0.345 4.345 22 H 0.100 0.900 23 C -0.204 4.204 24 N -0.565 5.565 25 Si 0.745 3.255 26 H -0.215 1.215 27 H -0.211 1.211 28 H -0.210 1.210 29 C 0.022 3.978 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.507 -2.090 -23.176 23.319 hybrid contribution -0.129 0.262 0.931 0.976 sum -1.636 -1.828 -22.245 22.380 Atomic orbital electron populations 1.22306 0.95913 1.01915 1.03111 1.21531 0.94547 0.83074 1.02830 1.47985 1.64557 1.13723 1.06439 1.20199 0.77037 0.86860 0.84664 1.90663 1.47155 1.15631 1.87059 1.20802 0.99632 0.96303 0.91704 0.87825 1.22283 0.96644 1.00852 0.94768 1.21052 0.99441 0.94897 0.96145 1.20355 0.96307 0.96129 0.92825 1.20422 1.02236 0.96647 0.97797 1.20767 0.95345 0.96313 0.97198 1.21104 1.06291 1.02581 0.93663 1.18582 0.91354 0.92600 0.85441 1.86218 1.56981 1.45461 1.32477 1.23032 0.92988 0.86996 1.03573 1.19300 0.99747 0.96182 0.95789 1.23686 0.98757 0.98271 0.80684 1.22836 0.95457 0.96891 0.86991 1.45262 1.03311 1.82246 1.02177 1.18859 0.93125 1.42204 0.80278 0.90031 1.24807 0.95237 1.02129 0.98193 1.69819 0.98548 1.54775 1.33398 0.86160 0.76951 0.78065 0.84342 1.21525 1.21144 1.21002 1.22567 0.91667 0.98665 0.84863 0.91914 0.91053 0.92790 0.91237 0.89533 0.90209 0.89640 0.90145 0.89675 0.86211 0.85822 0.85424 0.88227 0.92785 0.93100 0.86567 0.94093 0.94943 0.93558 0.94994 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.78 37.16 0.36 -1.90 16 2 C 0.10 1.40 4.81 -4.04 -0.02 1.38 16 3 N -0.59 -10.03 2.72 -165.73 -0.45 -10.49 16 4 C 0.53 8.99 6.08 -10.98 -0.07 8.92 16 5 O -0.53 -11.11 14.56 -8.90 -0.13 -11.24 16 6 C -0.06 -0.83 2.29 -91.89 -0.21 -1.05 16 7 H 0.10 1.22 5.74 -51.93 -0.30 0.92 16 8 C -0.11 -1.11 6.29 -25.32 -0.16 -1.27 16 9 C -0.08 -0.70 6.77 -26.84 -0.18 -0.88 16 10 C -0.06 -0.65 6.14 -104.22 -0.64 -1.29 16 11 C -0.15 -1.59 10.04 -39.51 -0.40 -1.99 16 12 C -0.08 -0.81 10.04 -39.65 -0.40 -1.21 16 13 C -0.22 -2.59 9.03 -39.47 -0.36 -2.95 16 14 C 0.17 2.42 6.24 -39.17 -0.24 2.17 16 15 O -0.30 -4.64 8.93 -33.88 -0.30 -4.94 16 16 C 0.03 0.33 9.81 101.05 0.99 1.32 16 17 C -0.11 -1.53 5.20 -104.06 -0.54 -2.07 16 18 C 0.09 1.86 4.60 -67.68 -0.31 1.55 16 19 C 0.11 2.27 8.22 -8.51 -0.07 2.20 16 20 N -0.60 -15.85 3.78 -184.63 -0.70 -16.55 16 21 C -0.22 -6.19 10.74 -15.06 -0.16 -6.35 16 22 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.92 -27.40 11.50 55.49 0.64 -26.76 16 25 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.15 3.54 6.30 -8.38 -0.05 3.49 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.11 6.74 -51.93 -0.35 0.76 16 32 H 0.05 0.68 7.12 -51.93 -0.37 0.31 16 33 H 0.07 0.73 5.90 -51.93 -0.31 0.42 16 34 H 0.09 1.26 5.96 -51.93 -0.31 0.95 16 35 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 36 H 0.09 0.67 7.55 -51.93 -0.39 0.28 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.25 6.29 -52.48 -0.33 0.92 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 44 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 45 H 0.12 2.69 7.27 -51.93 -0.38 2.31 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.03 0.65 7.05 -51.93 -0.37 0.29 16 48 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.03 0.74 5.43 -51.92 -0.28 0.46 16 50 H 0.07 1.97 7.11 -51.93 -0.37 1.60 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -34.93 388.61 -10.12 -45.05 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.46 Total: 2.00 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.55 Total: -0.20 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.51 Total: -53.79 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.43 Total: -16.18 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.93 -10.12 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952415836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.996 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds