Wall clock time and date at job start Wed Apr 1 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46959 * 2 1 4 4 C 1.34781 * 119.99897 * 275.35005 * 3 2 1 5 5 O 1.21282 * 119.99919 * 174.55502 * 4 3 2 6 6 C 1.50705 * 120.00003 * 354.54483 * 4 3 2 7 7 H 1.09000 * 110.26673 * 36.15507 * 6 4 3 8 8 C 1.54346 * 110.30414 * 274.07746 * 6 4 3 9 9 C 1.54353 * 102.37252 * 214.73998 * 8 6 4 10 10 C 1.51375 * 105.16983 * 26.33849 * 9 8 6 11 11 C 1.38547 * 130.36272 * 162.83526 * 10 9 8 12 12 C 1.38129 * 120.33759 * 180.02562 * 11 10 9 13 13 C 1.38166 * 119.99318 * 359.93527 * 12 11 10 14 14 C 1.38603 * 119.87377 * 0.02787 * 13 12 11 15 15 O 1.35900 * 119.94921 * 179.97438 * 14 13 12 16 16 C 1.42899 * 117.00077 * 0.02562 * 15 14 13 17 17 C 1.38124 * 109.76105 * 342.81534 * 10 9 8 18 18 C 1.46500 * 120.00381 * 95.34523 * 3 2 1 19 19 C 1.53490 * 114.20491 * 59.99922 * 18 3 2 20 20 N 1.47073 * 87.98646 * 220.34751 * 19 18 3 21 21 C 1.36934 * 136.05983 * 207.08561 * 20 19 18 22 22 H 1.08002 * 119.99536 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00132 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00116 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99957 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46889 * 179.97438 * 25 23 21 27 27 H 1.48497 * 109.47334 * 299.99789 * 25 23 21 28 28 H 1.48500 * 109.47329 * 59.99577 * 25 23 21 29 29 C 1.47063 * 87.88109 * 27.34128 * 20 19 18 30 30 H 1.08997 * 109.46627 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47622 * 300.00333 * 1 2 3 32 32 H 1.09004 * 109.46763 * 60.00407 * 1 2 3 33 33 H 1.09000 * 109.47176 * 239.99852 * 2 1 3 34 34 H 1.08998 * 109.46910 * 119.99154 * 2 1 3 35 35 H 1.08993 * 110.82593 * 332.95999 * 8 6 4 36 36 H 1.09004 * 110.82537 * 96.32681 * 8 6 4 37 37 H 1.09007 * 110.30030 * 145.26053 * 9 8 6 38 38 H 1.09000 * 110.30656 * 267.41020 * 9 8 6 39 39 H 1.08005 * 119.83266 * 359.97438 * 11 10 9 40 40 H 1.07995 * 120.00525 * 179.97438 * 12 11 10 41 41 H 1.08003 * 120.05923 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.46928 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.47561 * 300.00323 * 16 15 14 44 44 H 1.09003 * 109.46865 * 60.00656 * 16 15 14 45 45 H 1.09001 * 113.41718 * 193.20540 * 18 3 2 46 46 H 1.08998 * 113.46961 * 105.56888 * 19 18 3 47 47 H 1.09005 * 113.52478 * 335.13618 * 19 18 3 48 48 H 0.96999 * 120.00187 * 179.97438 * 24 23 21 49 49 H 1.09012 * 113.46881 * 87.44217 * 29 20 19 50 50 H 1.09004 * 113.46664 * 217.87528 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1403 2.0529 -1.1622 5 8 2.4494 3.2256 -1.1552 6 6 1.8929 1.3465 -2.4702 7 1 1.0835 0.6245 -2.3622 8 6 3.1793 0.6414 -2.9499 9 6 3.0858 0.7900 -4.4834 10 6 2.2483 2.0303 -4.7108 11 6 2.0979 2.8165 -5.8416 12 6 1.2669 3.9196 -5.8190 13 6 0.5794 4.2429 -4.6649 14 6 0.7261 3.4588 -3.5314 15 8 0.0511 3.7756 -2.3952 16 6 -0.7915 4.9289 -2.4414 17 6 1.5633 2.3497 -3.5547 18 6 2.3739 2.0325 1.2632 19 6 3.4935 1.3276 2.0413 20 7 2.7383 1.6008 3.2734 21 6 3.0415 1.7780 4.5970 22 1 4.0681 1.7226 4.9278 23 6 2.0294 2.0278 5.5135 24 7 0.7783 2.0948 5.1104 25 14 2.4432 2.2702 7.3189 26 1 1.1950 2.5210 8.0834 27 1 3.1081 1.0500 7.8425 28 1 3.3553 3.4327 7.4660 29 6 1.5135 1.5936 2.4594 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5137 0.8901 35 1 4.0649 1.1469 -2.5649 36 1 3.1772 -0.4090 -2.6585 37 1 4.0795 0.9209 -4.9120 38 1 2.5971 -0.0815 -4.9188 39 1 2.6338 2.5661 -6.7453 40 1 1.1539 4.5290 -6.7034 41 1 -0.0710 5.1049 -4.6461 42 1 -1.2695 5.0686 -1.4719 43 1 -0.1923 5.8074 -2.6808 44 1 -1.5552 4.7904 -3.2068 45 1 2.5029 3.1111 1.1731 46 1 4.4497 1.8485 1.9938 47 1 3.5805 0.2655 1.8121 48 1 0.0710 2.2690 5.7509 49 1 1.0775 0.6017 2.3398 50 1 0.7828 2.3413 2.7681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952415836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:28 Heat of formation + Delta-G solvation = 2.279647 kcal Electronic energy + Delta-G solvation = -31456.936199 eV Core-core repulsion = 27450.925661 eV Total energy + Delta-G solvation = -4006.010538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.01989 -40.92073 -39.52034 -38.75932 -36.47885 -36.04141 -34.15499 -31.74575 -31.36023 -30.37911 -29.56405 -28.45641 -28.00188 -26.42186 -25.29353 -24.44395 -23.35706 -22.80907 -21.76145 -21.01226 -19.73657 -18.97699 -18.51191 -18.29411 -17.53612 -17.08994 -16.87329 -16.53864 -16.46154 -16.10711 -15.81293 -15.35697 -15.21805 -14.94758 -14.80619 -14.40482 -14.30968 -13.91186 -13.74007 -13.59838 -13.55566 -13.33714 -13.16046 -12.95698 -12.85664 -12.76854 -12.64332 -12.57601 -12.40151 -12.18062 -12.13152 -12.08429 -11.98416 -11.92662 -11.77608 -11.63652 -11.35134 -10.89975 -10.64235 -9.53691 -9.45378 -9.02517 -8.97762 -7.94298 -5.29377 0.37003 0.55387 1.43936 1.48459 1.54434 1.72795 2.02476 2.47225 2.47921 2.82088 3.26968 3.35504 3.48329 3.55421 3.69076 3.85195 4.04469 4.05735 4.06489 4.17453 4.25339 4.26805 4.30988 4.31996 4.40310 4.45162 4.53292 4.55020 4.60480 4.64525 4.68553 4.71972 4.83118 4.84787 4.91983 4.93831 4.96103 5.08272 5.15709 5.17051 5.24656 5.29395 5.40984 5.42486 5.43990 5.52941 5.63362 5.77367 5.87362 5.94371 6.52771 6.59035 6.85422 7.32602 7.54392 8.53752 9.22945 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.002889 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.642952 B = 9690.325932 C =10367.981503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.594 5.594 4 C 0.523 3.477 5 O -0.576 6.576 6 C -0.057 4.057 7 H 0.119 0.881 8 C -0.105 4.105 9 C -0.071 4.071 10 C -0.061 4.061 11 C -0.155 4.155 12 C -0.078 4.078 13 C -0.229 4.229 14 C 0.133 3.867 15 O -0.335 6.335 16 C 0.025 3.975 17 C -0.146 4.146 18 C 0.113 3.887 19 C 0.115 3.885 20 N -0.636 5.636 21 C -0.233 4.233 22 H 0.088 0.912 23 C -0.066 4.066 24 N -0.952 5.952 25 Si 0.985 3.015 26 H -0.293 1.293 27 H -0.272 1.272 28 H -0.277 1.277 29 C 0.158 3.842 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.061 0.939 48 H 0.250 0.750 49 H 0.043 0.957 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -4.820 -26.367 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.325 5.325 4 C 0.312 3.688 5 O -0.455 6.455 6 C -0.077 4.077 7 H 0.137 0.863 8 C -0.143 4.143 9 C -0.108 4.108 10 C -0.061 4.061 11 C -0.173 4.173 12 C -0.096 4.096 13 C -0.247 4.247 14 C 0.088 3.912 15 O -0.248 6.248 16 C -0.070 4.070 17 C -0.147 4.147 18 C 0.008 3.992 19 C -0.011 4.011 20 N -0.362 5.362 21 C -0.361 4.361 22 H 0.106 0.894 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.812 3.188 26 H -0.219 1.219 27 H -0.198 1.198 28 H -0.203 1.203 29 C 0.031 3.969 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.116 0.884 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.396 -4.238 -25.802 26.151 hybrid contribution -0.483 0.973 1.620 1.951 sum -0.879 -3.265 -24.182 24.417 Atomic orbital electron populations 1.22252 0.95580 1.03384 1.01471 1.21820 0.94799 0.81075 1.04544 1.47999 1.64580 1.14996 1.04961 1.21018 0.75546 0.86433 0.85780 1.90636 1.49174 1.17914 1.87764 1.20871 1.01698 0.96323 0.88852 0.86296 1.22379 0.94036 1.01988 0.95890 1.21128 1.00118 0.94584 0.94969 1.20801 0.95848 0.97099 0.92326 1.20844 1.01851 0.96073 0.98526 1.21198 0.94340 0.96520 0.97517 1.21373 1.06923 1.02816 0.93634 1.19020 0.92409 0.93890 0.85874 1.86146 1.57946 1.46793 1.33911 1.23168 0.93234 0.86253 1.04341 1.19659 1.00992 0.96946 0.97082 1.22931 0.97425 0.96823 0.82061 1.22898 0.95147 0.98272 0.84816 1.45568 1.05119 1.82826 1.02726 1.19281 0.93578 1.41633 0.81617 0.89440 1.25713 0.95138 1.02382 1.02665 1.70027 0.99401 1.56084 1.34468 0.85063 0.76526 0.78370 0.78817 1.21887 1.19803 1.20344 1.22432 0.90648 0.97867 0.85932 0.88834 0.94573 0.92532 0.86909 0.90233 0.92046 0.86395 0.88487 0.86861 0.83228 0.82829 0.84163 0.88430 0.92599 0.90749 0.89781 0.93906 0.92130 0.94155 0.93970 0.95252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 9.78 71.98 0.70 -3.52 16 2 C 0.10 2.52 4.81 86.38 0.42 2.93 16 3 N -0.59 -20.13 2.72 -796.64 -2.17 -22.30 16 4 C 0.52 18.08 6.08 87.66 0.53 18.62 16 5 O -0.58 -25.36 14.56 10.78 0.16 -25.20 16 6 C -0.06 -1.41 2.29 -11.62 -0.03 -1.44 16 7 H 0.12 2.51 5.74 -2.39 -0.01 2.50 16 8 C -0.11 -1.84 6.29 31.51 0.20 -1.65 16 9 C -0.07 -0.99 6.77 30.52 0.21 -0.78 16 10 C -0.06 -1.26 6.14 -19.60 -0.12 -1.38 16 11 C -0.15 -2.76 10.04 22.32 0.22 -2.53 16 12 C -0.08 -1.43 10.04 22.23 0.22 -1.21 16 13 C -0.23 -5.30 9.03 22.34 0.20 -5.10 16 14 C 0.13 3.92 6.24 22.54 0.14 4.07 16 15 O -0.33 -10.93 8.93 -78.61 -0.70 -11.63 16 16 C 0.02 0.59 9.81 113.37 1.11 1.70 16 17 C -0.15 -3.97 5.20 -19.50 -0.10 -4.07 16 18 C 0.11 4.88 4.60 45.55 0.21 5.09 16 19 C 0.12 4.97 8.22 83.17 0.68 5.65 16 20 N -0.64 -34.26 3.78 -738.04 -2.79 -37.05 16 21 C -0.23 -13.53 10.74 84.03 0.90 -12.63 16 22 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 23 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.95 -58.88 11.50 21.65 0.25 -58.63 16 25 Si 0.99 46.57 29.55 68.60 2.03 48.60 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 C 0.16 7.86 6.30 83.26 0.52 8.39 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.15 6.74 -2.39 -0.02 1.14 16 32 H 0.06 1.38 7.12 -2.39 -0.02 1.36 16 33 H 0.11 1.92 5.90 -2.39 -0.01 1.90 16 34 H 0.08 2.17 5.96 -2.39 -0.01 2.15 16 35 H 0.06 1.32 7.91 -2.39 -0.02 1.30 16 36 H 0.12 1.27 7.55 -2.38 -0.02 1.26 16 37 H 0.10 1.06 8.14 -2.38 -0.02 1.05 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.14 2.67 6.29 -2.91 -0.02 2.65 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 44 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 45 H 0.08 4.18 7.27 -2.39 -0.02 4.16 16 46 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.06 2.32 7.05 -2.38 -0.02 2.30 16 48 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.04 2.01 5.43 -2.38 -0.01 2.00 16 50 H 0.03 1.70 7.11 -2.38 -0.02 1.68 16 Total: -1.00 -81.19 388.61 4.22 -76.97 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.95 Total: 20.47 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 6.50 Total: 8.77 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -4.71 Total: -117.98 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.55 Total: -36.83 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -81.19 4.22 -76.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952415836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.247 kcal (2) G-P(sol) polarization free energy of solvation -81.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds