Wall clock time and date at job start Wed Apr 1 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47110 * 2 1 4 4 C 1.34776 * 119.99490 * 99.18824 * 3 2 1 5 5 O 1.21593 * 119.99574 * 186.77686 * 4 3 2 6 6 C 1.47598 * 120.00724 * 6.78507 * 4 3 2 7 7 C 1.39726 * 120.09141 * 149.64592 * 6 4 3 8 8 C 1.37712 * 119.91563 * 180.02562 * 7 6 4 9 9 C 1.38997 * 120.08094 * 359.97438 * 8 7 6 10 10 O 1.35705 * 119.90763 * 179.97438 * 9 8 7 11 11 C 1.42902 * 116.99894 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47296 * 179.97438 * 11 10 9 13 13 C 1.53006 * 117.49975 * 243.74639 * 12 11 10 14 14 C 1.53001 * 117.50226 * 175.08665 * 12 11 10 15 15 C 1.38994 * 120.17951 * 0.25842 * 9 8 7 16 16 C 1.37702 * 120.08947 * 359.48957 * 15 9 8 17 17 C 1.46492 * 120.00048 * 279.18845 * 3 2 1 18 18 C 1.53944 * 113.74197 * 222.67041 * 17 3 2 19 19 N 1.47815 * 86.03492 * 222.08395 * 18 17 3 20 20 C 1.36935 * 134.45731 * 204.64084 * 19 18 17 21 21 H 1.07998 * 120.00412 * 179.86637 * 20 19 18 22 22 C 1.38817 * 120.00009 * 359.86675 * 20 19 18 23 23 N 1.31618 * 119.99779 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00212 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46942 * 90.00415 * 24 22 20 26 26 H 1.48498 * 109.47316 * 210.00251 * 24 22 20 27 27 H 1.48502 * 109.47046 * 330.00632 * 24 22 20 28 28 C 1.47578 * 91.05107 * 24.54904 * 19 18 17 29 29 H 1.09000 * 109.47488 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47480 * 299.99898 * 1 2 3 31 31 H 1.09001 * 109.46987 * 60.00255 * 1 2 3 32 32 H 1.09002 * 109.47084 * 239.99918 * 2 1 3 33 33 H 1.09001 * 109.46987 * 119.99745 * 2 1 3 34 34 H 1.08002 * 120.04338 * 359.97438 * 7 6 4 35 35 H 1.07999 * 119.95997 * 179.97438 * 8 7 6 36 36 H 1.09006 * 109.47053 * 299.99805 * 11 10 9 37 37 H 1.09003 * 109.47392 * 59.99923 * 11 10 9 38 38 H 1.08998 * 115.54764 * 29.41180 * 12 11 10 39 39 H 1.09002 * 117.49302 * 359.97438 * 13 12 11 40 40 H 1.08996 * 117.49656 * 145.01866 * 13 12 11 41 41 H 1.09004 * 117.49650 * 214.98092 * 14 12 11 42 42 H 1.09005 * 117.49492 * 359.97438 * 14 12 11 43 43 H 1.08005 * 119.95492 * 179.71626 * 15 9 8 44 44 H 1.07996 * 120.04951 * 180.23769 * 16 15 9 45 45 H 1.09007 * 112.94780 * 354.26331 * 17 3 2 46 46 H 1.09005 * 113.76972 * 336.34749 * 18 17 3 47 47 H 1.08996 * 113.76960 * 107.74868 * 18 17 3 48 48 H 0.96999 * 120.00115 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76948 * 221.14969 * 28 19 18 50 50 H 1.09001 * 113.76728 * 89.75468 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4186 1.9544 1.1523 5 8 2.7067 3.1354 1.1758 6 6 2.5075 1.1484 2.3856 7 6 3.4513 1.4684 3.3650 8 6 3.5314 0.7137 4.5141 9 6 2.6746 -0.3648 4.7005 10 8 2.7571 -1.1065 5.8340 11 6 1.8469 -2.2009 5.9608 12 6 2.0889 -2.9138 7.2927 13 6 2.5688 -4.3657 7.2400 14 6 1.1345 -4.0485 7.6704 15 6 1.7377 -0.6893 3.7264 16 6 1.6478 0.0636 2.5770 17 6 2.0715 2.1394 -1.2524 18 6 3.3600 2.9642 -1.4234 19 7 2.4824 4.0385 -1.9340 20 6 2.6644 5.1124 -2.7639 21 1 1.8358 5.7672 -2.9894 22 6 3.9141 5.3593 -3.3155 23 7 4.9239 4.5610 -3.0411 24 14 4.1624 6.8238 -4.4482 25 1 4.5574 8.0090 -3.6454 26 1 5.2309 6.5135 -5.4316 27 1 2.8960 7.1132 -5.1679 28 6 1.3313 3.4879 -1.1925 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1176 2.3060 3.2207 35 1 4.2609 0.9601 5.2715 36 1 0.8232 -1.8277 5.9287 37 1 2.0042 -2.9012 5.1404 38 1 2.4695 -2.2869 8.0991 39 1 2.7118 -4.8130 6.2563 40 1 3.2648 -4.6940 8.0119 41 1 0.8875 -4.1682 8.7253 42 1 0.3339 -4.2868 6.9700 43 1 1.0768 -1.5309 3.8729 44 1 0.9170 -0.1868 1.8223 45 1 1.8168 1.5374 -2.1247 46 1 3.8527 3.2095 -0.4825 47 1 4.0435 2.5614 -2.1707 48 1 5.7971 4.7333 -3.4268 49 1 0.3982 3.5023 -1.7558 50 1 1.2269 3.8873 -0.1837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957406376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:46 Heat of formation + Delta-G solvation = 78.877655 kcal Electronic energy + Delta-G solvation = -29914.298442 eV Core-core repulsion = 25911.609443 eV Total energy + Delta-G solvation = -4002.688999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84498 -39.90362 -38.16945 -37.17153 -36.37618 -35.55282 -32.14313 -31.26845 -30.43778 -30.11729 -28.08123 -27.14094 -24.60471 -24.07776 -23.55779 -22.92926 -22.90899 -22.27234 -21.03985 -20.16412 -18.78552 -18.45476 -16.96356 -16.86088 -16.52937 -16.26320 -15.71124 -15.34526 -15.17812 -14.84136 -14.61793 -14.55428 -14.49378 -13.80777 -13.58816 -13.34096 -13.18536 -12.88794 -12.75470 -12.41659 -12.38252 -12.16198 -12.07963 -11.81362 -11.65659 -11.57944 -11.36504 -11.18699 -11.12646 -10.99536 -10.80056 -10.73706 -10.52053 -10.45799 -10.02397 -9.90829 -9.39519 -9.26333 -9.12174 -8.57969 -8.32989 -8.02288 -6.68933 -5.63853 -2.94241 0.94863 1.17979 2.69018 3.03790 3.28274 3.29850 3.47266 3.51902 3.53326 3.79795 4.18066 4.31660 4.44469 4.52307 4.58190 4.62316 4.68868 4.74333 4.82877 4.93408 5.02301 5.10811 5.13201 5.17109 5.25923 5.35484 5.35946 5.39511 5.47661 5.56632 5.61807 5.64060 5.66569 5.73510 5.77242 5.83135 5.89669 6.01551 6.06946 6.17332 6.32020 6.44831 6.52617 6.69744 6.73310 7.04754 7.12987 7.39611 7.66625 7.70420 7.85864 8.10502 8.63962 9.17488 9.83563 10.75475 11.53651 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.002061 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.115993 B =13580.086397 C =14191.261324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 N -0.596 5.596 4 C 0.552 3.448 5 O -0.509 6.509 6 C -0.160 4.160 7 C -0.023 4.023 8 C -0.159 4.159 9 C 0.146 3.854 10 O -0.311 6.311 11 C 0.090 3.910 12 C -0.158 4.158 13 C -0.176 4.176 14 C -0.170 4.170 15 C -0.221 4.221 16 C -0.079 4.079 17 C 0.090 3.910 18 C 0.157 3.843 19 N -0.604 5.604 20 C -0.215 4.215 21 H 0.079 0.921 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.112 3.888 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.161 0.839 45 H 0.103 0.897 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.252 0.748 49 H 0.035 0.965 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 -21.794 19.317 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.052 4.052 3 N -0.329 5.329 4 C 0.340 3.660 5 O -0.385 6.385 6 C -0.163 4.163 7 C -0.042 4.042 8 C -0.178 4.178 9 C 0.100 3.900 10 O -0.224 6.224 11 C 0.015 3.985 12 C -0.176 4.176 13 C -0.213 4.213 14 C -0.207 4.207 15 C -0.240 4.240 16 C -0.097 4.097 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.330 5.330 20 C -0.343 4.343 21 H 0.097 0.903 22 C -0.207 4.207 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.015 4.015 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.148 0.852 44 H 0.178 0.822 45 H 0.121 0.879 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.298 -20.917 19.240 29.607 hybrid contribution 0.000 0.641 -0.645 0.909 sum -8.298 -20.277 18.595 28.736 Atomic orbital electron populations 1.22300 0.96114 1.02077 1.03186 1.22380 0.94264 0.84235 1.04327 1.47976 1.63637 1.13256 1.08016 1.18149 0.77890 0.87108 0.82814 1.90874 1.47848 1.14954 1.84797 1.20028 1.00687 0.98690 0.96928 1.21099 0.95522 0.97062 0.90515 1.20379 1.01774 0.96004 0.99611 1.19219 0.94290 0.91142 0.85343 1.86007 1.57361 1.41748 1.37283 1.22331 0.92635 0.87116 0.96437 1.22114 1.05850 0.91249 0.98417 1.23128 0.97354 0.97364 1.03429 1.23012 0.93629 1.01423 1.02629 1.21164 1.02636 1.04256 0.95900 1.22162 0.98374 0.92530 0.96608 1.24059 1.02196 0.91322 0.83708 1.22696 0.91385 0.85143 0.97682 1.45680 1.06100 1.30222 1.51003 1.18995 0.95194 1.02070 1.18028 0.90347 1.24776 0.95585 0.99265 1.01051 1.69833 1.00664 1.38581 1.47749 0.86123 0.77341 0.82224 0.80104 1.21708 1.21731 1.20700 1.22951 0.91895 0.90541 0.96144 0.91542 0.92041 0.91291 0.90618 0.88032 0.84053 0.84667 0.91366 0.91643 0.86509 0.88433 0.88344 0.88120 0.88430 0.85246 0.82185 0.87916 0.93016 0.91526 0.93805 0.94711 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.15 37.16 0.34 -1.33 16 2 C 0.07 0.80 5.58 -4.04 -0.02 0.78 16 3 N -0.60 -9.75 2.74 -169.11 -0.46 -10.22 16 4 C 0.55 9.96 6.86 -12.44 -0.09 9.87 16 5 O -0.51 -11.56 12.45 5.28 0.07 -11.49 16 6 C -0.16 -2.30 5.58 -104.96 -0.59 -2.88 16 7 C -0.02 -0.32 9.59 -39.22 -0.38 -0.69 16 8 C -0.16 -1.86 9.97 -39.49 -0.39 -2.26 16 9 C 0.15 1.59 6.70 -39.02 -0.26 1.33 16 10 O -0.31 -3.12 10.12 -18.82 -0.19 -3.31 16 11 C 0.09 0.62 5.02 37.16 0.19 0.81 16 12 C -0.16 -0.96 6.05 -90.61 -0.55 -1.50 16 13 C -0.18 -0.88 10.18 -26.69 -0.27 -1.15 16 14 C -0.17 -0.75 10.25 -26.69 -0.27 -1.03 16 15 C -0.22 -2.15 9.01 -39.50 -0.36 -2.51 16 16 C -0.08 -0.88 7.47 -39.22 -0.29 -1.17 16 17 C 0.09 1.81 4.58 -70.15 -0.32 1.49 16 18 C 0.16 4.04 6.79 -2.84 -0.02 4.02 16 19 N -0.60 -16.79 3.70 -177.89 -0.66 -17.45 16 20 C -0.21 -6.42 10.70 -15.06 -0.16 -6.58 16 21 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 23 N -0.92 -28.75 11.39 55.49 0.63 -28.12 16 24 Si 0.91 23.19 29.55 -169.99 -5.02 18.16 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 28 C 0.11 2.55 8.27 -2.97 -0.02 2.53 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 7.10 -51.93 -0.37 0.22 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.10 1.02 3.96 -52.33 -0.21 0.81 16 34 H 0.14 1.99 7.93 -52.49 -0.42 1.57 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.07 0.41 7.66 -51.93 -0.40 0.02 16 37 H 0.07 0.39 7.37 -51.93 -0.38 0.01 16 38 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.46 8.03 -51.93 -0.42 0.04 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.13 0.90 6.28 -52.48 -0.33 0.57 16 44 H 0.16 1.50 2.66 -52.49 -0.14 1.36 16 45 H 0.10 1.88 8.07 -51.92 -0.42 1.46 16 46 H 0.05 1.45 5.76 -51.93 -0.30 1.15 16 47 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 48 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.05 1.25 6.26 -51.93 -0.32 0.92 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -36.08 396.09 -10.66 -46.74 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.42 Total: 0.41 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -3.56 Total: -0.69 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.49 Total: -55.78 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.12 Total: -14.80 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.08 -10.66 -46.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957406376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.620 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds