Wall clock time and date at job start Wed Apr 1 2020 03:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46916 * 2 1 4 4 O 1.42899 * 109.46854 * 240.00091 * 2 1 3 5 5 C 1.35897 * 117.00474 * 89.26596 * 4 2 1 6 6 C 1.38724 * 120.05862 * 174.02810 * 5 4 2 7 7 C 1.38148 * 119.94346 * 179.74750 * 6 5 4 8 8 C 1.38261 * 120.05395 * 0.50375 * 7 6 5 9 9 C 1.38263 * 120.11223 * 359.76896 * 8 7 6 10 10 C 1.38143 * 120.05828 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.47010 * 119.99983 * 2 1 3 12 12 O 1.21279 * 120.00046 * 114.99345 * 11 2 1 13 13 N 1.34773 * 119.99954 * 294.99849 * 11 2 1 14 14 C 1.47673 * 134.45460 * 179.97438 * 13 11 2 15 15 C 1.53449 * 85.97204 * 155.71415 * 14 13 11 16 16 C 1.47675 * 134.45679 * 0.02562 * 13 11 2 17 17 C 1.52626 * 113.71435 * 268.85205 * 15 14 13 18 18 C 1.53184 * 109.35210 * 171.27476 * 17 15 14 19 19 C 1.52669 * 109.43023 * 58.93238 * 18 17 15 20 20 N 1.46901 * 109.34125 * 303.76904 * 19 18 17 21 21 C 1.36938 * 120.69049 * 235.30397 * 20 19 18 22 22 H 1.07998 * 119.99599 * 152.57246 * 21 20 19 23 23 C 1.38813 * 119.99933 * 332.57668 * 21 20 19 24 24 N 1.31624 * 119.99821 * 331.39980 * 23 21 20 25 25 Si 1.86801 * 120.00014 * 151.40287 * 23 21 20 26 26 H 1.48503 * 109.47030 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47317 * 119.99823 * 25 23 21 28 28 H 1.48499 * 109.47088 * 239.99855 * 25 23 21 29 29 C 1.47118 * 118.61807 * 55.04078 * 20 19 18 30 30 H 1.08995 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47048 * 300.00589 * 1 2 3 32 32 H 1.08998 * 109.47127 * 59.99690 * 1 2 3 33 33 H 1.08003 * 120.02758 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.97045 * 180.23121 * 7 6 5 35 35 H 1.08005 * 119.94533 * 179.74830 * 8 7 6 36 36 H 1.08005 * 119.97055 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.02925 * 179.97438 * 10 9 8 38 38 H 1.09007 * 113.78809 * 41.45419 * 14 13 11 39 39 H 1.09000 * 113.79631 * 269.97815 * 14 13 11 40 40 H 1.08996 * 113.79795 * 90.01507 * 16 13 11 41 41 H 1.09008 * 113.78814 * 318.54617 * 16 13 11 42 42 H 1.08999 * 109.49636 * 291.24219 * 17 15 14 43 43 H 1.09004 * 109.49233 * 51.31717 * 17 15 14 44 44 H 1.09003 * 109.49107 * 179.02920 * 18 17 15 45 45 H 1.09002 * 109.49075 * 299.10075 * 18 17 15 46 46 H 1.08993 * 109.44467 * 183.78279 * 19 18 17 47 47 H 1.08999 * 109.36703 * 63.70435 * 19 18 17 48 48 H 0.96993 * 120.00089 * 355.81589 * 24 23 21 49 49 H 1.09001 * 109.63757 * 68.58019 * 29 20 19 50 50 H 1.09004 * 109.63507 * 189.19093 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1973 0.0814 -2.2804 6 6 2.7739 -0.4803 -3.4103 7 6 2.9622 0.2881 -4.5428 8 6 2.5861 1.6185 -4.5474 9 6 2.0164 2.1822 -3.4207 10 6 1.8211 1.4168 -2.2874 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7467 1.1216 13 7 1.7919 -0.1942 2.4520 14 6 2.1213 -0.6052 3.8316 15 6 1.9813 0.8798 4.1920 16 6 1.0927 1.0086 2.9472 17 6 3.2892 1.6607 4.0961 18 6 3.0008 3.1561 4.2604 19 6 2.3331 3.3992 5.6116 20 7 1.1204 2.5760 5.7102 21 6 -0.0929 3.1489 5.9837 22 1 -1.0018 2.6805 5.6361 23 6 -0.1545 4.3317 6.7077 24 7 0.7843 4.6157 7.5854 25 14 -1.5699 5.5202 6.4364 26 1 -2.4853 4.9722 5.4034 27 1 -2.3125 5.7045 7.7090 28 1 -1.0367 6.8290 5.9804 29 6 1.2356 1.1240 5.5030 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 3.0720 -1.5183 -3.4057 34 1 3.4077 -0.1497 -5.4239 35 1 2.7379 2.2187 -5.4324 36 1 1.7238 3.2218 -3.4266 37 1 1.3764 1.8576 -1.4075 38 1 3.1342 -0.9916 3.9453 39 1 1.3668 -1.2426 4.2926 40 1 0.0326 0.8508 3.1453 41 1 1.2882 1.9047 2.3580 42 1 3.9674 1.3324 4.8837 43 1 3.7481 1.4835 3.1234 44 1 3.9355 3.7145 4.2095 45 1 2.3348 3.4877 3.4637 46 1 2.0670 4.4523 5.7006 47 1 3.0237 3.1278 6.4101 48 1 1.4859 3.9720 7.7705 49 1 1.7908 0.6791 6.3288 50 1 0.2408 0.6820 5.4464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982137592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:57 Heat of formation + Delta-G solvation = 12.331029 kcal Electronic energy + Delta-G solvation = -30735.191297 eV Core-core repulsion = 26729.616620 eV Total energy + Delta-G solvation = -4005.574677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.03513 -40.29865 -38.56893 -37.31175 -36.08006 -33.08735 -32.48614 -31.13460 -30.72331 -30.02257 -29.55345 -26.30393 -26.24783 -25.25537 -24.47981 -22.97672 -22.41162 -22.18678 -20.75164 -19.23650 -18.69123 -18.04125 -17.41221 -17.06618 -16.53290 -16.03545 -15.97871 -15.35272 -15.23365 -14.69461 -14.50795 -14.19526 -14.08030 -13.71532 -13.68358 -13.61829 -13.40191 -13.28732 -13.04868 -12.75396 -12.53062 -12.47963 -12.10830 -12.01403 -11.86779 -11.83365 -11.46080 -11.33671 -11.12594 -10.99648 -10.76471 -10.52249 -10.32092 -10.17468 -10.08551 -9.90041 -9.66077 -9.38042 -9.27088 -8.67951 -8.45309 -8.38081 -6.96283 -6.18765 -3.29417 1.06454 1.18006 2.31072 2.53293 3.25850 3.45785 3.47498 3.53069 3.60821 4.14385 4.41094 4.45979 4.58159 4.59873 4.63556 4.66711 4.87523 4.93417 5.07866 5.10132 5.12209 5.20818 5.26712 5.32929 5.39959 5.42347 5.46036 5.52833 5.59518 5.64196 5.69558 5.73817 5.78516 5.80762 5.86138 6.05057 6.07348 6.13882 6.21128 6.26501 6.34050 6.39127 6.49029 6.50507 6.58278 6.62808 6.98389 7.11494 7.14334 7.66001 7.92332 8.08051 8.49297 9.01936 9.76144 10.21132 11.12094 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.002711 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.562312 B =10324.634073 C =11292.487870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.098 0.902 4 O -0.286 6.286 5 C 0.132 3.868 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.162 4.162 9 C -0.078 4.078 10 C -0.212 4.212 11 C 0.538 3.462 12 O -0.529 6.529 13 N -0.638 5.638 14 C 0.118 3.882 15 C -0.101 4.101 16 C 0.118 3.882 17 C -0.084 4.084 18 C -0.135 4.135 19 C 0.149 3.851 20 N -0.595 5.595 21 C -0.355 4.355 22 H 0.057 0.943 23 C -0.021 4.021 24 N -0.910 5.910 25 Si 1.065 2.935 26 H -0.292 1.292 27 H -0.294 1.294 28 H -0.290 1.290 29 C 0.163 3.837 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.016 0.984 48 H 0.270 0.730 49 H 0.023 0.977 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -6.067 -18.832 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 H 0.116 0.884 4 O -0.199 6.199 5 C 0.086 3.914 6 C -0.170 4.170 7 C -0.099 4.099 8 C -0.180 4.180 9 C -0.096 4.096 10 C -0.231 4.231 11 C 0.325 3.675 12 O -0.405 6.405 13 N -0.374 5.374 14 C -0.004 4.004 15 C -0.103 4.103 16 C -0.004 4.004 17 C -0.121 4.121 18 C -0.175 4.175 19 C 0.023 3.977 20 N -0.318 5.318 21 C -0.483 4.483 22 H 0.074 0.926 23 C -0.224 4.224 24 N -0.549 5.549 25 Si 0.895 3.105 26 H -0.218 1.218 27 H -0.221 1.221 28 H -0.217 1.217 29 C 0.036 3.964 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.034 0.966 48 H 0.081 0.919 49 H 0.041 0.959 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.190 -5.430 -18.612 19.511 hybrid contribution 0.464 -1.296 -0.405 1.435 sum 2.654 -6.726 -19.018 20.346 Atomic orbital electron populations 1.22279 0.92296 1.04315 1.04064 1.22134 0.95911 0.97035 0.83743 0.88441 1.86198 1.80814 1.35550 1.17298 1.19121 0.94978 0.90118 0.87155 1.20481 1.03448 1.01340 0.91706 1.20978 0.97946 0.93861 0.97136 1.21078 1.02474 0.95581 0.98850 1.20976 0.96750 0.99565 0.92356 1.21343 1.07345 0.93777 1.00620 1.19693 0.80175 0.84704 0.82900 1.90718 1.40709 1.23250 1.85798 1.50086 1.55879 1.27201 1.04273 1.23276 1.01593 0.97200 0.78309 1.22589 0.97066 0.93259 0.97431 1.23348 0.97392 0.86612 0.93044 1.21121 0.94516 0.95850 1.00653 1.21989 0.99768 0.94531 1.01183 1.20823 0.87521 0.97380 0.91977 1.44104 1.05206 0.99896 1.82601 1.19913 0.84612 1.10066 1.33744 0.92565 1.25791 1.03540 0.99845 0.93178 1.70731 1.16280 1.40500 1.27370 0.83542 0.75127 0.76195 0.75654 1.21790 1.22150 1.21678 1.20777 0.97159 0.87167 0.91262 0.90773 0.89889 0.90670 0.85099 0.85361 0.85912 0.85654 0.85218 0.90208 0.89518 0.89112 0.90161 0.91931 0.93116 0.92810 0.92382 0.90312 0.96579 0.91909 0.95900 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.21 37.16 0.34 -1.44 16 2 C 0.07 0.90 2.40 -27.88 -0.07 0.83 16 3 H 0.10 1.09 6.04 -51.93 -0.31 0.78 16 4 O -0.29 -4.06 9.32 -39.27 -0.37 -4.42 16 5 C 0.13 1.61 6.64 -39.22 -0.26 1.35 16 6 C -0.15 -1.64 9.99 -39.43 -0.39 -2.04 16 7 C -0.08 -0.72 10.04 -39.61 -0.40 -1.11 16 8 C -0.16 -1.37 10.04 -39.56 -0.40 -1.77 16 9 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 10 C -0.21 -2.23 8.47 -39.43 -0.33 -2.56 16 11 C 0.54 8.30 7.41 -10.99 -0.08 8.22 16 12 O -0.53 -10.21 17.23 -14.30 -0.25 -10.46 16 13 N -0.64 -8.91 3.43 -180.43 -0.62 -9.53 16 14 C 0.12 1.61 7.97 -3.18 -0.03 1.58 16 15 C -0.10 -1.49 0.87 -154.42 -0.13 -1.63 16 16 C 0.12 1.59 6.22 -3.16 -0.02 1.57 16 17 C -0.08 -1.26 5.03 -26.83 -0.13 -1.39 16 18 C -0.14 -2.28 5.99 -26.81 -0.16 -2.44 16 19 C 0.15 3.16 4.70 -3.99 -0.02 3.14 16 20 N -0.59 -13.23 2.86 -172.75 -0.49 -13.73 16 21 C -0.35 -9.01 9.47 -15.06 -0.14 -9.15 16 22 H 0.06 1.44 7.97 -52.49 -0.42 1.02 16 23 C -0.02 -0.55 4.58 -17.43 -0.08 -0.63 16 24 N -0.91 -25.83 12.47 55.49 0.69 -25.14 16 25 Si 1.06 23.86 30.00 -169.99 -5.10 18.76 16 26 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 29 C 0.16 2.96 5.71 -3.81 -0.02 2.94 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.80 6.64 -51.93 -0.35 0.45 16 32 H 0.07 0.68 7.39 -51.93 -0.38 0.29 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.13 1.21 5.60 -52.49 -0.29 0.92 16 38 H 0.08 1.08 8.09 -51.92 -0.42 0.66 16 39 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 40 H 0.09 1.20 7.88 -51.93 -0.41 0.79 16 41 H 0.08 1.05 7.37 -51.92 -0.38 0.67 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.73 8.02 -51.93 -0.42 0.31 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.98 7.37 -51.93 -0.38 0.60 16 46 H 0.08 1.91 6.29 -51.93 -0.33 1.59 16 47 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 48 H 0.27 7.74 7.01 -40.82 -0.29 7.46 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 1.08 7.78 -51.93 -0.40 0.67 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -31.43 395.75 -10.69 -42.12 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.80 Total: 2.06 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.72 Total: -5.62 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.42 Total: -48.40 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.61 Total: -14.88 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.10 Total: 18.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.43 -10.69 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982137592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.448 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds