Wall clock time and date at job start Wed Apr 1 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46916 * 2 1 4 4 O 1.42899 * 109.46854 * 240.00091 * 2 1 3 5 5 C 1.35897 * 117.00474 * 89.26596 * 4 2 1 6 6 C 1.38724 * 120.05862 * 174.02810 * 5 4 2 7 7 C 1.38148 * 119.94346 * 179.74750 * 6 5 4 8 8 C 1.38261 * 120.05395 * 0.50375 * 7 6 5 9 9 C 1.38263 * 120.11223 * 359.76896 * 8 7 6 10 10 C 1.38143 * 120.05828 * 359.97438 * 9 8 7 11 11 C 1.50704 * 109.47010 * 119.99983 * 2 1 3 12 12 O 1.21279 * 120.00046 * 114.99345 * 11 2 1 13 13 N 1.34773 * 119.99954 * 294.99849 * 11 2 1 14 14 C 1.47673 * 134.45460 * 179.97438 * 13 11 2 15 15 C 1.53449 * 85.97204 * 155.71415 * 14 13 11 16 16 C 1.47675 * 134.45679 * 0.02562 * 13 11 2 17 17 C 1.52626 * 113.71435 * 268.85205 * 15 14 13 18 18 C 1.53184 * 109.35210 * 171.27476 * 17 15 14 19 19 C 1.52669 * 109.43023 * 58.93238 * 18 17 15 20 20 N 1.46901 * 109.34125 * 303.76904 * 19 18 17 21 21 C 1.36938 * 120.69049 * 235.30397 * 20 19 18 22 22 H 1.07998 * 119.99599 * 152.57246 * 21 20 19 23 23 C 1.38813 * 119.99933 * 332.57668 * 21 20 19 24 24 N 1.31624 * 119.99821 * 331.39980 * 23 21 20 25 25 Si 1.86801 * 120.00014 * 151.40287 * 23 21 20 26 26 H 1.48503 * 109.47030 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47317 * 119.99823 * 25 23 21 28 28 H 1.48499 * 109.47088 * 239.99855 * 25 23 21 29 29 C 1.47118 * 118.61807 * 55.04078 * 20 19 18 30 30 H 1.08995 * 109.47417 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47048 * 300.00589 * 1 2 3 32 32 H 1.08998 * 109.47127 * 59.99690 * 1 2 3 33 33 H 1.08003 * 120.02758 * 359.97438 * 6 5 4 34 34 H 1.07999 * 119.97045 * 180.23121 * 7 6 5 35 35 H 1.08005 * 119.94533 * 179.74830 * 8 7 6 36 36 H 1.08005 * 119.97055 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.02925 * 179.97438 * 10 9 8 38 38 H 1.09007 * 113.78809 * 41.45419 * 14 13 11 39 39 H 1.09000 * 113.79631 * 269.97815 * 14 13 11 40 40 H 1.08996 * 113.79795 * 90.01507 * 16 13 11 41 41 H 1.09008 * 113.78814 * 318.54617 * 16 13 11 42 42 H 1.08999 * 109.49636 * 291.24219 * 17 15 14 43 43 H 1.09004 * 109.49233 * 51.31717 * 17 15 14 44 44 H 1.09003 * 109.49107 * 179.02920 * 18 17 15 45 45 H 1.09002 * 109.49075 * 299.10075 * 18 17 15 46 46 H 1.08993 * 109.44467 * 183.78279 * 19 18 17 47 47 H 1.08999 * 109.36703 * 63.70435 * 19 18 17 48 48 H 0.96993 * 120.00089 * 355.81589 * 24 23 21 49 49 H 1.09001 * 109.63757 * 68.58019 * 29 20 19 50 50 H 1.09004 * 109.63507 * 189.19093 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1973 0.0814 -2.2804 6 6 2.7739 -0.4803 -3.4103 7 6 2.9622 0.2881 -4.5428 8 6 2.5861 1.6185 -4.5474 9 6 2.0164 2.1822 -3.4207 10 6 1.8211 1.4168 -2.2874 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7467 1.1216 13 7 1.7919 -0.1942 2.4520 14 6 2.1213 -0.6052 3.8316 15 6 1.9813 0.8798 4.1920 16 6 1.0927 1.0086 2.9472 17 6 3.2892 1.6607 4.0961 18 6 3.0008 3.1561 4.2604 19 6 2.3331 3.3992 5.6116 20 7 1.1204 2.5760 5.7102 21 6 -0.0929 3.1489 5.9837 22 1 -1.0018 2.6805 5.6361 23 6 -0.1545 4.3317 6.7077 24 7 0.7843 4.6157 7.5854 25 14 -1.5699 5.5202 6.4364 26 1 -2.4853 4.9722 5.4034 27 1 -2.3125 5.7045 7.7090 28 1 -1.0367 6.8290 5.9804 29 6 1.2356 1.1240 5.5030 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 3.0720 -1.5183 -3.4057 34 1 3.4077 -0.1497 -5.4239 35 1 2.7379 2.2187 -5.4324 36 1 1.7238 3.2218 -3.4266 37 1 1.3764 1.8576 -1.4075 38 1 3.1342 -0.9916 3.9453 39 1 1.3668 -1.2426 4.2926 40 1 0.0326 0.8508 3.1453 41 1 1.2882 1.9047 2.3580 42 1 3.9674 1.3324 4.8837 43 1 3.7481 1.4835 3.1234 44 1 3.9355 3.7145 4.2095 45 1 2.3348 3.4877 3.4637 46 1 2.0670 4.4523 5.7006 47 1 3.0237 3.1278 6.4101 48 1 1.4859 3.9720 7.7705 49 1 1.7908 0.6791 6.3288 50 1 0.2408 0.6820 5.4464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982137592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:56 Heat of formation + Delta-G solvation = -3.590031 kcal Electronic energy + Delta-G solvation = -30735.881686 eV Core-core repulsion = 26729.616620 eV Total energy + Delta-G solvation = -4006.265066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.15032 -41.26112 -39.70310 -38.27543 -37.61723 -34.63952 -33.55853 -32.35126 -31.86707 -31.17622 -30.53215 -27.56694 -27.36871 -27.03820 -25.43007 -24.00872 -23.72721 -23.06494 -22.21535 -20.40539 -19.53579 -19.34283 -19.21459 -18.13537 -17.53452 -17.13343 -16.78615 -16.37873 -16.31399 -16.12403 -15.85301 -15.43723 -15.38625 -15.18311 -14.87984 -14.76453 -14.42932 -14.34887 -14.05866 -13.95475 -13.68583 -13.48955 -13.31562 -13.22940 -13.06025 -12.86687 -12.65891 -12.48931 -12.46117 -12.18809 -11.97861 -11.84796 -11.81211 -11.75624 -11.63362 -11.35612 -11.06549 -10.87880 -10.34084 -9.97913 -9.84718 -9.23292 -8.84270 -8.20924 -5.29572 0.36065 0.43905 1.27072 1.38722 1.64594 1.70407 1.86031 2.29093 2.69736 2.81609 3.08239 3.21397 3.34161 3.57211 3.66701 3.71583 3.80578 3.88620 3.91308 3.96635 4.19106 4.25789 4.26995 4.30049 4.36272 4.44792 4.48258 4.51562 4.53392 4.57331 4.59485 4.67705 4.70902 4.75560 4.87075 4.88387 4.98218 5.01649 5.05182 5.06433 5.20001 5.25271 5.32565 5.35305 5.45841 5.50951 5.58073 5.80968 5.94093 6.32722 6.45541 6.50950 6.91043 7.11503 7.84899 8.30690 9.06806 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.002711 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.562312 B =10324.634073 C =11292.487870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.113 0.887 4 O -0.313 6.313 5 C 0.103 3.897 6 C -0.171 4.171 7 C -0.081 4.081 8 C -0.160 4.160 9 C -0.083 4.083 10 C -0.219 4.219 11 C 0.534 3.466 12 O -0.575 6.575 13 N -0.631 5.631 14 C 0.120 3.880 15 C -0.096 4.096 16 C 0.124 3.876 17 C -0.077 4.077 18 C -0.123 4.123 19 C 0.155 3.845 20 N -0.609 5.609 21 C -0.346 4.346 22 H 0.057 0.943 23 C -0.075 4.075 24 N -0.943 5.943 25 Si 1.111 2.889 26 H -0.268 1.268 27 H -0.299 1.299 28 H -0.291 1.291 29 C 0.164 3.836 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.000 1.000 48 H 0.254 0.746 49 H 0.018 0.982 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -5.471 -21.407 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.130 0.870 4 O -0.227 6.227 5 C 0.059 3.941 6 C -0.189 4.189 7 C -0.099 4.099 8 C -0.178 4.178 9 C -0.101 4.101 10 C -0.238 4.238 11 C 0.324 3.676 12 O -0.455 6.455 13 N -0.367 5.367 14 C -0.002 4.002 15 C -0.098 4.098 16 C 0.003 3.997 17 C -0.115 4.115 18 C -0.162 4.162 19 C 0.029 3.971 20 N -0.334 5.334 21 C -0.476 4.476 22 H 0.074 0.926 23 C -0.272 4.272 24 N -0.585 5.585 25 Si 0.937 3.063 26 H -0.193 1.193 27 H -0.226 1.226 28 H -0.218 1.218 29 C 0.038 3.962 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.018 0.982 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.569 -4.847 -21.207 21.810 hybrid contribution 0.699 -1.530 0.378 1.724 sum 2.268 -6.377 -20.829 21.901 Atomic orbital electron populations 1.22250 0.90606 1.04088 1.05251 1.22175 0.97027 0.96951 0.82286 0.86956 1.86154 1.81552 1.36835 1.18126 1.19403 0.96700 0.91031 0.86981 1.20704 1.04120 1.01709 0.92407 1.21313 0.97313 0.94087 0.97175 1.21477 1.01131 0.95592 0.99607 1.21335 0.96225 1.00599 0.91970 1.21507 1.07449 0.93189 1.01635 1.20238 0.79342 0.84232 0.83837 1.90692 1.42910 1.25381 1.86478 1.50048 1.55317 1.27144 1.04153 1.23314 1.02322 0.96353 0.78219 1.22390 0.96980 0.94363 0.96099 1.23378 0.97499 0.86750 0.92084 1.21065 0.94646 0.94373 1.01417 1.21825 1.00054 0.96176 0.98116 1.20682 0.87171 0.95185 0.94090 1.44305 1.04633 1.01751 1.82670 1.20160 0.85826 1.09732 1.31843 0.92556 1.26980 1.05122 1.01964 0.93106 1.70858 1.17377 1.40459 1.29803 0.82916 0.73080 0.74502 0.75828 1.19310 1.22645 1.21803 1.20854 0.97831 0.84695 0.92822 0.91723 0.88898 0.89160 0.85497 0.82853 0.83205 0.83361 0.84340 0.90034 0.88121 0.88278 0.89058 0.91869 0.91701 0.91160 0.92070 0.93848 0.98174 0.93637 0.96453 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.21 71.98 0.66 -2.45 16 2 C 0.07 1.80 2.40 29.85 0.07 1.87 16 3 H 0.11 2.29 6.04 -2.39 -0.01 2.28 16 4 O -0.31 -8.84 9.32 -73.41 -0.68 -9.53 16 5 C 0.10 2.46 6.64 22.51 0.15 2.61 16 6 C -0.17 -3.62 9.99 22.36 0.22 -3.39 16 7 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 8 C -0.16 -2.23 10.04 22.28 0.22 -2.01 16 9 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 10 C -0.22 -4.20 8.47 22.37 0.19 -4.01 16 11 C 0.53 15.97 7.41 87.66 0.65 16.62 16 12 O -0.58 -22.27 17.23 15.96 0.28 -21.99 16 13 N -0.63 -16.46 3.43 -843.15 -2.89 -19.35 16 14 C 0.12 3.04 7.97 86.30 0.69 3.73 16 15 C -0.10 -2.66 0.87 -52.03 -0.05 -2.71 16 16 C 0.12 3.04 6.22 86.31 0.54 3.57 16 17 C -0.08 -2.17 5.03 30.53 0.15 -2.02 16 18 C -0.12 -3.94 5.99 30.55 0.18 -3.75 16 19 C 0.15 6.60 4.70 86.19 0.41 7.01 16 20 N -0.61 -26.97 2.86 -700.45 -2.00 -28.98 16 21 C -0.35 -17.46 9.47 84.03 0.80 -16.66 16 22 H 0.06 2.81 7.97 -2.91 -0.02 2.79 16 23 C -0.07 -3.99 4.58 84.86 0.39 -3.60 16 24 N -0.94 -54.94 12.47 21.65 0.27 -54.67 16 25 Si 1.11 48.01 30.00 68.60 2.06 50.06 16 26 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 27 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 29 C 0.16 5.78 5.71 86.19 0.49 6.27 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.54 6.64 -2.39 -0.02 1.53 16 32 H 0.09 1.43 7.39 -2.39 -0.02 1.41 16 33 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.14 2.26 5.60 -2.91 -0.02 2.25 16 38 H 0.08 2.08 8.09 -2.38 -0.02 2.06 16 39 H 0.10 2.30 8.09 -2.39 -0.02 2.28 16 40 H 0.10 2.33 7.88 -2.39 -0.02 2.31 16 41 H 0.09 2.08 7.37 -2.38 -0.02 2.07 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.69 8.02 -2.38 -0.02 1.67 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.94 7.37 -2.39 -0.02 1.92 16 46 H 0.04 2.16 6.29 -2.39 -0.02 2.14 16 47 H 0.00 0.01 8.00 -2.39 -0.02 -0.01 16 48 H 0.25 15.13 7.01 -92.71 -0.65 14.48 16 49 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 2.17 7.78 -2.38 -0.02 2.15 16 Total: -1.00 -69.83 395.75 4.29 -65.54 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.05 Total: 19.91 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.21 Total: -1.00 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -4.62 Total: -103.00 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.41 Total: -31.52 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.06 Total: 50.06 kcal Total: -69.83 4.29 -65.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982137592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.954 kcal (2) G-P(sol) polarization free energy of solvation -69.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds