Wall clock time and date at job start Wed Apr 1 2020 03:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47024 * 2 1 4 4 O 1.42906 * 109.46795 * 240.00449 * 2 1 3 5 5 C 1.35897 * 117.00203 * 84.97105 * 4 2 1 6 6 C 1.38734 * 120.05207 * 174.31559 * 5 4 2 7 7 C 1.38145 * 119.93848 * 179.74560 * 6 5 4 8 8 C 1.38267 * 120.06066 * 0.50523 * 7 6 5 9 9 C 1.38269 * 120.10582 * 359.77169 * 8 7 6 10 10 C 1.38140 * 120.05870 * 359.97263 * 9 8 7 11 11 C 1.50693 * 109.47214 * 120.00093 * 2 1 3 12 12 O 1.21284 * 120.00005 * 111.90746 * 11 2 1 13 13 N 1.34771 * 120.00037 * 291.90070 * 11 2 1 14 14 C 1.46887 * 120.46643 * 354.53321 * 13 11 2 15 15 C 1.52851 * 109.01798 * 235.48328 * 14 13 11 16 16 C 1.52678 * 109.17785 * 307.81867 * 15 14 13 17 17 C 1.53480 * 113.62289 * 188.99541 * 16 15 14 18 18 N 1.47667 * 85.98712 * 137.70446 * 17 16 15 19 19 C 1.36937 * 134.45492 * 155.70810 * 18 17 16 20 20 H 1.07997 * 119.99791 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99894 * 359.96262 * 19 18 17 22 22 N 1.31619 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99841 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46797 * 59.99851 * 23 21 19 25 25 H 1.48501 * 109.47088 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47224 * 299.99975 * 23 21 19 27 27 C 1.47659 * 91.08572 * 335.68179 * 18 17 16 28 28 C 1.52671 * 113.18173 * 57.46116 * 16 15 14 29 29 C 1.46883 * 120.46594 * 174.80762 * 13 11 2 30 30 H 1.09005 * 109.46669 * 297.09545 * 1 2 3 31 31 H 1.09000 * 109.47165 * 57.09461 * 1 2 3 32 32 H 1.08999 * 109.47404 * 177.09341 * 1 2 3 33 33 H 1.07999 * 120.03166 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.96758 * 180.27673 * 7 6 5 35 35 H 1.07995 * 119.94846 * 179.75146 * 8 7 6 36 36 H 1.08004 * 119.96789 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02823 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.58851 * 355.30802 * 14 13 11 39 39 H 1.08999 * 109.58666 * 115.74627 * 14 13 11 40 40 H 1.09001 * 109.61206 * 187.84107 * 15 14 13 41 41 H 1.09004 * 109.44747 * 67.69935 * 15 14 13 42 42 H 1.08998 * 113.79405 * 251.97662 * 17 16 15 43 43 H 1.09003 * 113.79016 * 23.44086 * 17 16 15 44 44 H 0.96999 * 119.99810 * 180.02562 * 22 21 19 45 45 H 1.09002 * 113.79289 * 270.04411 * 27 18 17 46 46 H 1.09004 * 113.79463 * 138.57807 * 27 18 17 47 47 H 1.09004 * 109.52684 * 182.51767 * 28 16 15 48 48 H 1.08998 * 109.59290 * 62.33905 * 28 16 15 49 49 H 1.09002 * 109.59103 * 244.25739 * 29 13 11 50 50 H 1.09004 * 109.58887 * 4.69015 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1119 0.0625 -2.3044 6 6 2.6772 -0.4943 -3.4423 7 6 2.7786 0.2544 -4.5989 8 6 2.3267 1.5609 -4.6199 9 6 1.7681 2.1200 -3.4853 10 6 1.6596 1.3739 -2.3279 11 6 2.0323 -0.7104 1.2304 12 8 2.6040 -1.7749 1.1251 13 7 1.8465 -0.1628 2.4477 14 6 1.2639 1.1791 2.5797 15 6 2.2160 2.0579 3.3907 16 6 2.5673 1.3461 4.6949 17 6 3.3417 2.2254 5.6862 18 7 2.4675 1.6442 6.7247 19 6 2.5783 1.4566 8.0766 20 1 1.7718 0.9930 8.6252 21 6 3.7271 1.8622 8.7417 22 7 4.7103 2.4266 8.0729 23 14 3.8779 1.6070 10.5861 24 1 3.7770 0.1579 10.8952 25 1 5.1909 2.1216 11.0514 26 1 2.7860 2.3379 11.2779 27 6 1.4259 1.3469 5.7212 28 6 3.1934 -0.0296 4.4789 29 6 2.2293 -0.8970 3.6609 30 1 -0.3633 0.4681 0.9149 31 1 -0.3633 0.5583 -0.8628 32 1 -0.3634 -1.0263 -0.0521 33 1 3.0344 -1.5134 -3.4252 34 1 3.2145 -0.1801 -5.4863 35 1 2.4105 2.1459 -5.5239 36 1 1.4162 3.1409 -3.5042 37 1 1.2236 1.8112 -1.4418 38 1 1.1208 1.6142 1.5906 39 1 0.3053 1.1123 3.0942 40 1 1.7346 3.0101 3.6135 41 1 3.1250 2.2349 2.8157 42 1 4.3913 1.9508 5.7907 43 1 3.1933 3.2946 5.5345 44 1 5.5132 2.7096 8.5377 45 1 0.7080 2.1549 5.5799 46 1 0.9528 0.3738 5.8534 47 1 3.3785 -0.5012 5.4441 48 1 4.1343 0.0777 3.9394 49 1 1.3401 -1.1132 4.2532 50 1 2.7219 -1.8292 3.3839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035845214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:04 Heat of formation + Delta-G solvation = 18.177342 kcal Electronic energy + Delta-G solvation = -30517.980774 eV Core-core repulsion = 26512.659612 eV Total energy + Delta-G solvation = -4005.321162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03246 -40.03594 -38.77984 -37.47558 -35.84154 -33.04885 -32.31697 -31.23703 -30.86094 -30.29541 -29.78162 -26.96911 -25.33460 -24.90926 -23.60236 -23.40687 -22.87223 -22.11906 -21.12464 -19.66664 -18.75401 -17.73567 -16.84494 -16.68638 -16.57559 -16.02336 -15.97998 -15.31951 -14.92086 -14.88526 -14.69812 -14.61536 -14.06037 -13.82613 -13.79910 -13.69525 -13.46634 -13.20666 -12.72831 -12.70869 -12.43372 -12.39309 -12.18757 -12.09099 -11.85804 -11.71485 -11.35401 -11.13967 -11.08537 -11.05887 -10.88771 -10.84224 -10.40367 -10.20749 -9.80924 -9.73087 -9.55089 -9.37837 -9.29943 -8.79397 -8.52654 -8.48041 -6.87358 -5.76879 -3.08877 1.03275 1.15151 2.38809 2.48799 3.31150 3.38754 3.43091 3.44277 3.49942 4.16072 4.35718 4.44926 4.55417 4.57453 4.60639 4.79891 4.83283 4.96547 5.04448 5.07792 5.12905 5.22537 5.24569 5.27295 5.30522 5.36080 5.44852 5.46595 5.64273 5.70277 5.72223 5.80500 5.85727 5.90079 6.01201 6.10266 6.11884 6.22415 6.23546 6.25764 6.37449 6.45990 6.57595 6.61108 6.77316 6.83052 7.10670 7.21952 7.34442 7.36039 7.57507 7.98550 8.07872 9.04735 9.71023 10.60691 11.39967 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.002161 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.161812 B =12951.869099 C =13225.200900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.067 3.933 3 H 0.098 0.902 4 O -0.285 6.285 5 C 0.132 3.868 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.162 4.162 9 C -0.079 4.079 10 C -0.213 4.213 11 C 0.519 3.481 12 O -0.523 6.523 13 N -0.600 5.600 14 C 0.105 3.895 15 C -0.120 4.120 16 C -0.109 4.109 17 C 0.173 3.827 18 N -0.609 5.609 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.126 3.874 28 C -0.096 4.096 29 C 0.115 3.885 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.254 0.746 45 H 0.031 0.969 46 H 0.041 0.959 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 -0.719 -23.935 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.007 3.993 3 H 0.115 0.885 4 O -0.198 6.198 5 C 0.087 3.913 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.180 4.180 9 C -0.097 4.097 10 C -0.231 4.231 11 C 0.305 3.695 12 O -0.398 6.398 13 N -0.334 5.334 14 C -0.018 4.018 15 C -0.159 4.159 16 C -0.110 4.110 17 C 0.048 3.952 18 N -0.335 5.335 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.000 4.000 28 C -0.135 4.135 29 C -0.007 4.007 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.086 -1.500 -23.610 25.001 hybrid contribution -0.033 0.477 1.221 1.311 sum -8.119 -1.023 -22.389 23.837 Atomic orbital electron populations 1.22404 0.92486 1.04643 1.04060 1.22223 0.95871 0.97016 0.84161 0.88453 1.86218 1.80866 1.36944 1.15723 1.19114 0.95076 0.90377 0.86746 1.20497 1.03569 1.01585 0.91278 1.20986 0.97781 0.94023 0.97070 1.21077 1.02275 0.95870 0.98772 1.20962 0.97101 0.99412 0.92262 1.21327 1.07212 0.94329 1.00271 1.19954 0.79727 0.85935 0.83903 1.90722 1.40994 1.22334 1.85774 1.48005 1.62244 1.17751 1.05450 1.21835 0.97401 0.81979 1.00587 1.21772 0.99166 0.98282 0.96714 1.22392 0.99513 0.96455 0.92639 1.22228 0.96772 0.93244 0.82942 1.45944 1.14878 1.69612 1.03049 1.18951 1.01038 1.33573 0.81449 0.90465 1.24764 0.96676 1.01000 0.97981 1.69802 1.06860 1.45740 1.34433 0.86236 0.76878 0.77811 0.85041 1.21100 1.21598 1.21272 1.22591 0.91943 0.97443 0.88002 1.21490 0.97205 0.94335 1.00427 1.21748 0.99213 0.95739 0.83953 0.89737 0.90642 0.90551 0.85055 0.85365 0.85948 0.85724 0.85269 0.90555 0.90654 0.90417 0.91720 0.90973 0.95764 0.93632 0.95169 0.94133 0.89310 0.92040 0.91126 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.84 37.16 0.33 -1.13 16 2 C 0.07 0.73 1.79 -27.89 -0.05 0.68 16 3 H 0.10 0.88 5.20 -51.93 -0.27 0.61 16 4 O -0.29 -3.71 9.35 -39.19 -0.37 -4.07 16 5 C 0.13 1.47 6.60 -39.22 -0.26 1.21 16 6 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 7 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 8 C -0.16 -1.22 10.04 -39.56 -0.40 -1.62 16 9 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 10 C -0.21 -1.92 8.27 -39.44 -0.33 -2.24 16 11 C 0.52 7.31 7.04 -10.99 -0.08 7.23 16 12 O -0.52 -9.52 15.92 -14.22 -0.23 -9.75 16 13 N -0.60 -7.72 2.95 -172.96 -0.51 -8.23 16 14 C 0.10 1.08 4.89 -3.91 -0.02 1.06 16 15 C -0.12 -1.55 5.24 -26.97 -0.14 -1.69 16 16 C -0.11 -1.84 0.77 -154.42 -0.12 -1.96 16 17 C 0.17 3.89 6.64 -3.16 -0.02 3.87 16 18 N -0.61 -14.96 3.53 -179.80 -0.64 -15.60 16 19 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -27.01 11.39 55.49 0.63 -26.37 16 23 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.13 2.38 7.72 -3.15 -0.02 2.36 16 28 C -0.10 -1.61 5.22 -26.73 -0.14 -1.75 16 29 C 0.11 1.65 6.30 -3.66 -0.02 1.63 16 30 H 0.08 0.57 6.16 -51.93 -0.32 0.25 16 31 H 0.07 0.51 6.88 -51.93 -0.36 0.15 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.13 0.94 5.39 -52.48 -0.28 0.66 16 38 H 0.08 0.58 5.00 -51.93 -0.26 0.32 16 39 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 43 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 46 H 0.04 0.74 7.41 -51.93 -0.38 0.35 16 47 H 0.09 1.71 8.01 -51.93 -0.42 1.29 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 50 H 0.09 1.37 6.97 -51.93 -0.36 1.01 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -33.71 390.45 -10.56 -44.27 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.60 Total: -0.20 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.71 Total: -2.91 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.51 Total: -50.20 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.59 Total: -13.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.71 -10.56 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035845214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.447 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds