Wall clock time and date at job start Wed Apr 1 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47024 * 2 1 4 4 O 1.42906 * 109.46795 * 240.00449 * 2 1 3 5 5 C 1.35897 * 117.00203 * 84.97105 * 4 2 1 6 6 C 1.38734 * 120.05207 * 174.31559 * 5 4 2 7 7 C 1.38145 * 119.93848 * 179.74560 * 6 5 4 8 8 C 1.38267 * 120.06066 * 0.50523 * 7 6 5 9 9 C 1.38269 * 120.10582 * 359.77169 * 8 7 6 10 10 C 1.38140 * 120.05870 * 359.97263 * 9 8 7 11 11 C 1.50693 * 109.47214 * 120.00093 * 2 1 3 12 12 O 1.21284 * 120.00005 * 111.90746 * 11 2 1 13 13 N 1.34771 * 120.00037 * 291.90070 * 11 2 1 14 14 C 1.46887 * 120.46643 * 354.53321 * 13 11 2 15 15 C 1.52851 * 109.01798 * 235.48328 * 14 13 11 16 16 C 1.52678 * 109.17785 * 307.81867 * 15 14 13 17 17 C 1.53480 * 113.62289 * 188.99541 * 16 15 14 18 18 N 1.47667 * 85.98712 * 137.70446 * 17 16 15 19 19 C 1.36937 * 134.45492 * 155.70810 * 18 17 16 20 20 H 1.07997 * 119.99791 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99894 * 359.96262 * 19 18 17 22 22 N 1.31619 * 120.00264 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99841 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46797 * 59.99851 * 23 21 19 25 25 H 1.48501 * 109.47088 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47224 * 299.99975 * 23 21 19 27 27 C 1.47659 * 91.08572 * 335.68179 * 18 17 16 28 28 C 1.52671 * 113.18173 * 57.46116 * 16 15 14 29 29 C 1.46883 * 120.46594 * 174.80762 * 13 11 2 30 30 H 1.09005 * 109.46669 * 297.09545 * 1 2 3 31 31 H 1.09000 * 109.47165 * 57.09461 * 1 2 3 32 32 H 1.08999 * 109.47404 * 177.09341 * 1 2 3 33 33 H 1.07999 * 120.03166 * 359.97438 * 6 5 4 34 34 H 1.08004 * 119.96758 * 180.27673 * 7 6 5 35 35 H 1.07995 * 119.94846 * 179.75146 * 8 7 6 36 36 H 1.08004 * 119.96789 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02823 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.58851 * 355.30802 * 14 13 11 39 39 H 1.08999 * 109.58666 * 115.74627 * 14 13 11 40 40 H 1.09001 * 109.61206 * 187.84107 * 15 14 13 41 41 H 1.09004 * 109.44747 * 67.69935 * 15 14 13 42 42 H 1.08998 * 113.79405 * 251.97662 * 17 16 15 43 43 H 1.09003 * 113.79016 * 23.44086 * 17 16 15 44 44 H 0.96999 * 119.99810 * 180.02562 * 22 21 19 45 45 H 1.09002 * 113.79289 * 270.04411 * 27 18 17 46 46 H 1.09004 * 113.79463 * 138.57807 * 27 18 17 47 47 H 1.09004 * 109.52684 * 182.51767 * 28 16 15 48 48 H 1.08998 * 109.59290 * 62.33905 * 28 16 15 49 49 H 1.09002 * 109.59103 * 244.25739 * 29 13 11 50 50 H 1.09004 * 109.58887 * 4.69015 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1119 0.0625 -2.3044 6 6 2.6772 -0.4943 -3.4423 7 6 2.7786 0.2544 -4.5989 8 6 2.3267 1.5609 -4.6199 9 6 1.7681 2.1200 -3.4853 10 6 1.6596 1.3739 -2.3279 11 6 2.0323 -0.7104 1.2304 12 8 2.6040 -1.7749 1.1251 13 7 1.8465 -0.1628 2.4477 14 6 1.2639 1.1791 2.5797 15 6 2.2160 2.0579 3.3907 16 6 2.5673 1.3461 4.6949 17 6 3.3417 2.2254 5.6862 18 7 2.4675 1.6442 6.7247 19 6 2.5783 1.4566 8.0766 20 1 1.7718 0.9930 8.6252 21 6 3.7271 1.8622 8.7417 22 7 4.7103 2.4266 8.0729 23 14 3.8779 1.6070 10.5861 24 1 3.7770 0.1579 10.8952 25 1 5.1909 2.1216 11.0514 26 1 2.7860 2.3379 11.2779 27 6 1.4259 1.3469 5.7212 28 6 3.1934 -0.0296 4.4789 29 6 2.2293 -0.8970 3.6609 30 1 -0.3633 0.4681 0.9149 31 1 -0.3633 0.5583 -0.8628 32 1 -0.3634 -1.0263 -0.0521 33 1 3.0344 -1.5134 -3.4252 34 1 3.2145 -0.1801 -5.4863 35 1 2.4105 2.1459 -5.5239 36 1 1.4162 3.1409 -3.5042 37 1 1.2236 1.8112 -1.4418 38 1 1.1208 1.6142 1.5906 39 1 0.3053 1.1123 3.0942 40 1 1.7346 3.0101 3.6135 41 1 3.1250 2.2349 2.8157 42 1 4.3913 1.9508 5.7907 43 1 3.1933 3.2946 5.5345 44 1 5.5132 2.7096 8.5377 45 1 0.7080 2.1549 5.5799 46 1 0.9528 0.3738 5.8534 47 1 3.3785 -0.5012 5.4441 48 1 4.1343 0.0777 3.9394 49 1 1.3401 -1.1132 4.2532 50 1 2.7219 -1.8292 3.3839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035845214.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:03 Heat of formation + Delta-G solvation = -0.945923 kcal Electronic energy + Delta-G solvation = -30518.810021 eV Core-core repulsion = 26512.659612 eV Total energy + Delta-G solvation = -4006.150409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.99906 -41.07170 -40.01710 -38.26258 -37.14161 -34.53215 -33.63462 -32.13413 -31.96028 -31.40353 -30.50627 -28.69323 -26.78296 -26.09957 -24.85086 -24.41967 -23.63028 -23.14275 -22.48592 -20.75242 -19.51716 -18.93477 -18.68236 -17.84485 -17.50693 -16.90619 -16.85311 -16.68082 -16.18126 -16.08871 -15.88271 -15.62660 -15.31557 -15.15156 -14.89307 -14.52755 -14.36909 -14.15557 -14.05605 -13.71389 -13.62053 -13.49458 -13.28616 -13.09170 -12.93444 -12.79869 -12.76963 -12.61228 -12.41725 -12.24926 -12.15715 -12.04407 -11.71882 -11.64608 -11.55671 -11.20776 -11.02880 -10.79674 -10.71046 -9.91313 -9.68020 -9.16289 -8.85860 -7.88072 -5.19664 0.42524 0.50528 1.41395 1.44183 1.46967 1.51308 1.52946 2.44977 2.48682 2.87914 3.26753 3.32802 3.43261 3.61680 3.62866 3.86136 3.93606 3.95697 3.97871 4.03209 4.14708 4.27543 4.32122 4.40837 4.43707 4.54695 4.58712 4.64489 4.66356 4.68942 4.75513 4.76427 4.80926 4.89849 4.94217 5.03950 5.11827 5.14644 5.14853 5.21696 5.30703 5.34542 5.38428 5.47842 5.51631 5.61253 5.64195 5.76838 5.87253 5.98817 6.27675 6.45285 6.95370 7.02255 7.64958 8.61840 9.28495 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.002161 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.161812 B =12951.869099 C =13225.200900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.121 0.879 4 O -0.317 6.317 5 C 0.106 3.894 6 C -0.175 4.175 7 C -0.084 4.084 8 C -0.163 4.163 9 C -0.082 4.082 10 C -0.216 4.216 11 C 0.514 3.486 12 O -0.575 6.575 13 N -0.596 5.596 14 C 0.104 3.896 15 C -0.115 4.115 16 C -0.082 4.082 17 C 0.167 3.833 18 N -0.641 5.641 19 C -0.228 4.228 20 H 0.082 0.918 21 C -0.071 4.071 22 N -0.955 5.955 23 Si 0.973 3.027 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.277 1.277 27 C 0.131 3.869 28 C -0.090 4.090 29 C 0.125 3.875 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.246 0.754 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.085 0.915 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.346 0.963 -25.894 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.139 0.861 4 O -0.230 6.230 5 C 0.061 3.939 6 C -0.194 4.194 7 C -0.102 4.102 8 C -0.181 4.181 9 C -0.100 4.100 10 C -0.234 4.234 11 C 0.302 3.698 12 O -0.454 6.454 13 N -0.329 5.329 14 C -0.017 4.017 15 C -0.154 4.154 16 C -0.083 4.083 17 C 0.042 3.958 18 N -0.367 5.367 19 C -0.356 4.356 20 H 0.099 0.901 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.802 3.198 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.203 1.203 27 C 0.006 3.994 28 C -0.128 4.128 29 C 0.003 3.997 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.103 0.897 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.881 0.198 -25.590 27.808 hybrid contribution 0.835 -0.046 1.758 1.946 sum -10.046 0.153 -23.833 25.864 Atomic orbital electron populations 1.22418 0.90128 1.04391 1.05998 1.22328 0.97434 0.97053 0.82097 0.86138 1.86172 1.81699 1.38442 1.16727 1.19371 0.96698 0.91494 0.86336 1.20689 1.04608 1.01806 0.92286 1.21274 0.97482 0.94405 0.97015 1.21466 1.01144 0.95671 0.99809 1.21357 0.96358 1.00527 0.91749 1.21565 1.06869 0.93403 1.01555 1.20662 0.78683 0.85450 0.85014 1.90698 1.43349 1.24802 1.86556 1.48049 1.61707 1.18579 1.04564 1.22109 0.97087 0.79881 1.02656 1.21751 1.00286 0.99042 0.94311 1.22088 0.96942 0.95345 0.93949 1.22176 0.95025 0.93709 0.84911 1.46334 1.17528 1.69909 1.02952 1.19355 1.00811 1.32207 0.83249 0.90057 1.25571 0.96745 1.01870 1.02135 1.70004 1.07192 1.47556 1.35658 0.85225 0.76451 0.77854 0.80266 1.20438 1.22359 1.20307 1.22793 0.91805 0.98520 0.86249 1.21347 0.97650 0.94755 0.99053 1.21500 0.98901 0.94791 0.84542 0.87585 0.88738 0.92020 0.85974 0.83374 0.83483 0.83029 0.83336 0.86636 0.88362 0.88531 0.91610 0.95173 0.96394 0.94533 0.92734 0.93065 0.92653 0.93116 0.89707 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 8.84 71.98 0.64 -1.59 16 2 C 0.07 1.36 1.79 29.85 0.05 1.42 16 3 H 0.12 1.72 5.20 -2.39 -0.01 1.70 16 4 O -0.32 -8.10 9.35 -73.48 -0.69 -8.79 16 5 C 0.11 2.23 6.60 22.51 0.15 2.38 16 6 C -0.18 -3.50 9.99 22.37 0.22 -3.28 16 7 C -0.08 -1.22 10.04 22.25 0.22 -1.00 16 8 C -0.16 -1.98 10.04 22.28 0.22 -1.75 16 9 C -0.08 -0.99 10.04 22.25 0.22 -0.77 16 10 C -0.22 -3.25 8.27 22.36 0.18 -3.06 16 11 C 0.51 13.89 7.04 87.66 0.62 14.51 16 12 O -0.57 -21.40 15.92 15.87 0.25 -21.15 16 13 N -0.60 -14.03 2.95 -819.51 -2.42 -16.45 16 14 C 0.10 1.69 4.89 86.26 0.42 2.11 16 15 C -0.12 -2.59 5.24 30.44 0.16 -2.43 16 16 C -0.08 -2.70 0.77 -52.03 -0.04 -2.74 16 17 C 0.17 7.67 6.64 86.31 0.57 8.24 16 18 N -0.64 -31.72 3.53 -722.75 -2.55 -34.28 16 19 C -0.23 -12.64 10.70 84.03 0.90 -11.74 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 22 N -0.95 -58.15 11.39 21.65 0.25 -57.90 16 23 Si 0.97 46.13 29.55 68.60 2.03 48.15 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 C 0.13 4.68 7.72 86.32 0.67 5.35 16 28 C -0.09 -3.04 5.22 30.60 0.16 -2.89 16 29 C 0.12 3.52 6.30 86.42 0.54 4.07 16 30 H 0.11 0.89 6.16 -2.38 -0.01 0.87 16 31 H 0.09 0.89 6.88 -2.39 -0.02 0.87 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.15 1.51 5.39 -2.91 -0.02 1.49 16 38 H 0.12 1.07 5.00 -2.39 -0.01 1.06 16 39 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 40 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.03 1.61 7.12 -2.39 -0.02 1.60 16 43 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.06 1.76 8.07 -2.39 -0.02 1.74 16 46 H 0.05 1.74 7.41 -2.38 -0.02 1.72 16 47 H 0.05 2.24 8.01 -2.38 -0.02 2.22 16 48 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.08 2.17 7.49 -2.39 -0.02 2.15 16 50 H 0.07 2.37 6.97 -2.38 -0.02 2.35 16 Total: -1.00 -78.86 390.45 4.20 -74.66 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.94 Total: 12.50 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.39 Total: 3.25 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -4.72 Total: -108.63 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.43 Total: -29.94 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -78.86 4.20 -74.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035845214.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.716 kcal (2) G-P(sol) polarization free energy of solvation -78.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds