Wall clock time and date at job start Wed Apr 1 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46857 * 2 1 4 4 O 1.42900 * 109.47438 * 120.00023 * 2 1 3 5 5 C 1.35902 * 117.00100 * 275.28080 * 4 2 1 6 6 C 1.38734 * 120.05321 * 3.57603 * 5 4 2 7 7 C 1.38151 * 119.94168 * 179.69714 * 6 5 4 8 8 C 1.38264 * 120.05319 * 0.60536 * 7 6 5 9 9 C 1.38262 * 120.11229 * 359.67107 * 8 7 6 10 10 C 1.38152 * 120.05718 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47059 * 240.00512 * 2 1 3 12 12 O 1.21290 * 119.99613 * 245.00117 * 11 2 1 13 13 N 1.34776 * 120.00436 * 64.99552 * 11 2 1 14 14 C 1.46940 * 120.44374 * 359.97438 * 13 11 2 15 15 C 1.54061 * 108.50697 * 125.66589 * 14 13 11 16 16 H 1.09002 * 110.71345 * 172.22089 * 15 14 13 17 17 C 1.53368 * 108.80548 * 294.57758 * 15 14 13 18 18 C 1.53013 * 109.24843 * 60.02140 * 17 15 14 19 19 C 1.52569 * 109.66506 * 60.81264 * 18 17 15 20 20 C 1.53367 * 109.33262 * 299.16952 * 19 18 17 21 21 H 1.08999 * 111.08229 * 177.90252 * 20 19 18 22 22 C 1.46954 * 120.44500 * 180.02562 * 13 11 2 23 23 N 1.47565 * 107.98422 * 56.45271 * 20 19 18 24 24 C 1.36940 * 121.61143 * 122.25912 * 23 20 19 25 25 H 1.08001 * 120.00076 * 26.72153 * 24 23 20 26 26 C 1.38811 * 119.99810 * 206.71709 * 24 23 20 27 27 N 1.31618 * 120.00345 * 30.93076 * 26 24 23 28 28 Si 1.86803 * 119.99986 * 210.92898 * 26 24 23 29 29 H 1.48499 * 109.47389 * 59.99957 * 28 26 24 30 30 H 1.48493 * 109.47256 * 180.02562 * 28 26 24 31 31 H 1.48503 * 109.46725 * 300.00336 * 28 26 24 32 32 H 1.09003 * 109.47128 * 299.99931 * 1 2 3 33 33 H 1.09003 * 109.47381 * 59.99683 * 1 2 3 34 34 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 35 35 H 1.07995 * 120.03301 * 0.02562 * 6 5 4 36 36 H 1.07997 * 119.97273 * 180.32155 * 7 6 5 37 37 H 1.08000 * 119.94361 * 179.69968 * 8 7 6 38 38 H 1.08004 * 119.97541 * 180.02562 * 9 8 7 39 39 H 1.08005 * 120.02742 * 180.02562 * 10 9 8 40 40 H 1.09004 * 109.62716 * 245.50531 * 14 13 11 41 41 H 1.09005 * 109.62461 * 5.87544 * 14 13 11 42 42 H 1.09007 * 109.50726 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.51060 * 300.03935 * 17 15 14 44 44 H 1.08997 * 109.41443 * 180.68510 * 18 17 15 45 45 H 1.08998 * 109.41723 * 300.55204 * 18 17 15 46 46 H 1.08996 * 109.37580 * 179.26704 * 19 18 17 47 47 H 1.08995 * 109.56287 * 59.18009 * 19 18 17 48 48 H 1.09001 * 109.62756 * 114.52783 * 22 13 11 49 49 H 1.08995 * 109.62725 * 353.95040 * 22 13 11 50 50 H 0.97001 * 119.99513 * 5.54373 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1070 0.0611 2.3056 6 6 1.6849 1.3826 2.3194 7 6 1.7825 2.1256 3.4800 8 6 2.3118 1.5569 4.6237 9 6 2.7384 0.2418 4.6109 10 6 2.6372 -0.5073 3.4545 11 6 2.0323 -0.7103 -1.2305 12 8 2.6529 -1.7466 -1.1215 13 7 1.7918 -0.1941 -2.4520 14 6 1.0403 1.0605 -2.5954 15 6 1.8839 2.0432 -3.4298 16 1 1.3068 2.9348 -3.6749 17 6 3.1481 2.4038 -2.6399 18 6 3.9516 1.1309 -2.3654 19 6 4.3632 0.4885 -3.6866 20 6 3.1067 0.1166 -4.4835 21 1 3.3686 -0.3120 -5.4509 22 6 2.2766 -0.8789 -3.6585 23 7 2.2996 1.3394 -4.6585 24 6 1.9576 1.8020 -5.9012 25 1 1.8793 1.1147 -6.7306 26 6 1.7115 3.1544 -6.0949 27 7 2.3428 4.0494 -5.3650 28 14 0.4842 3.7041 -7.3915 29 1 -0.8525 3.1372 -7.0798 30 1 0.4039 5.1868 -7.4000 31 1 0.9261 3.2250 -8.7258 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.2755 1.8287 1.4251 36 1 1.4492 3.1528 3.4927 37 1 2.3917 2.1408 5.5287 38 1 3.1512 -0.2003 5.5057 39 1 2.9703 -1.5346 3.4452 40 1 0.0948 0.8652 -3.1014 41 1 0.8473 1.4862 -1.6106 42 1 3.7542 3.0991 -3.2208 43 1 2.8667 2.8684 -1.6950 44 1 4.8447 1.3825 -1.7935 45 1 3.3401 0.4326 -1.7939 46 1 4.9461 -0.4103 -3.4856 47 1 4.9645 1.1918 -4.2626 48 1 1.4283 -1.2261 -4.2483 49 1 2.8991 -1.7268 -3.3729 50 1 3.0377 3.7697 -4.7487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039994271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:52 Heat of formation + Delta-G solvation = 13.852921 kcal Electronic energy + Delta-G solvation = -32466.572684 eV Core-core repulsion = 28461.064001 eV Total energy + Delta-G solvation = -4005.508683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.26246 -40.07860 -38.18864 -37.16644 -34.44045 -33.30901 -32.49634 -31.66004 -30.88143 -30.36154 -29.75639 -27.02686 -25.82308 -24.77881 -23.54702 -22.85812 -22.23139 -21.60208 -21.35566 -19.60466 -18.73428 -18.59444 -17.40351 -16.51555 -16.37617 -15.85625 -15.82409 -15.18029 -14.78250 -14.60391 -14.46761 -14.18775 -13.91566 -13.74521 -13.60842 -13.46197 -13.17121 -13.01265 -12.77591 -12.63406 -12.48846 -12.30408 -12.17593 -11.93438 -11.74193 -11.69043 -11.23916 -11.13795 -10.93032 -10.79987 -10.69218 -10.39941 -10.36607 -10.22881 -10.00824 -9.73416 -9.56504 -9.28499 -9.17161 -8.51057 -8.34369 -8.08324 -6.91531 -6.21147 -3.31212 1.15967 1.28162 2.58322 2.67500 3.43610 3.46557 3.54270 3.62546 3.64742 4.37079 4.47453 4.57326 4.70181 4.73711 4.77870 4.91247 4.96102 5.17247 5.19927 5.22874 5.36193 5.42113 5.45199 5.49931 5.53008 5.54912 5.57989 5.64693 5.74663 5.83130 5.87262 5.95498 6.04675 6.13980 6.15881 6.17411 6.23244 6.25683 6.35367 6.35642 6.44152 6.57908 6.61392 6.74629 6.76148 6.86567 6.96824 7.06287 7.25905 7.62419 7.88078 8.29197 8.45191 8.96006 9.70096 10.18466 11.07981 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.003335 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.240503 B = 8394.554949 C = 8974.267020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.099 0.901 4 O -0.284 6.284 5 C 0.134 3.866 6 C -0.212 4.212 7 C -0.078 4.078 8 C -0.163 4.163 9 C -0.081 4.081 10 C -0.152 4.152 11 C 0.521 3.479 12 O -0.531 6.531 13 N -0.585 5.585 14 C 0.084 3.916 15 C 0.160 3.840 16 H 0.105 0.895 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.124 4.124 20 C 0.154 3.846 21 H 0.081 0.919 22 C 0.104 3.896 23 N -0.584 5.584 24 C -0.354 4.354 25 H 0.059 0.941 26 C -0.018 4.018 27 N -0.906 5.906 28 Si 1.057 2.943 29 H -0.293 1.293 30 H -0.286 1.286 31 H -0.293 1.293 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -4.526 15.637 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.006 3.994 3 H 0.116 0.884 4 O -0.197 6.197 5 C 0.088 3.912 6 C -0.231 4.231 7 C -0.096 4.096 8 C -0.181 4.181 9 C -0.100 4.100 10 C -0.171 4.171 11 C 0.309 3.691 12 O -0.408 6.408 13 N -0.319 5.319 14 C -0.040 4.040 15 C 0.052 3.948 16 H 0.123 0.877 17 C -0.166 4.166 18 C -0.176 4.176 19 C -0.163 4.163 20 C 0.046 3.954 21 H 0.099 0.901 22 C -0.020 4.020 23 N -0.306 5.306 24 C -0.482 4.482 25 H 0.077 0.923 26 C -0.222 4.222 27 N -0.546 5.546 28 Si 0.887 3.113 29 H -0.220 1.220 30 H -0.212 1.212 31 H -0.220 1.220 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.102 0.898 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.241 -3.954 14.919 15.770 hybrid contribution 0.820 -0.959 0.499 1.356 sum -2.422 -4.912 15.418 16.362 Atomic orbital electron populations 1.22522 0.92641 1.04558 1.04387 1.22260 0.95873 0.97162 0.84133 0.88368 1.86202 1.80737 1.37105 1.15642 1.19122 0.95030 0.90326 0.86712 1.21356 1.07347 0.94146 1.00217 1.20967 0.97029 0.99479 0.92172 1.21057 1.02651 0.95751 0.98666 1.20962 0.97889 0.94023 0.97082 1.20467 1.04118 1.01401 0.91077 1.19660 0.80244 0.85225 0.84016 1.90709 1.40593 1.23490 1.85995 1.48013 1.54255 1.24564 1.05044 1.22833 0.95890 0.84846 1.00477 1.21302 0.93078 0.94647 0.85801 0.87743 1.22042 0.98703 0.97089 0.98801 1.22003 0.99258 0.98374 0.97933 1.21860 0.98339 0.99409 0.96713 1.21261 0.89529 0.88557 0.96057 0.90079 1.22287 0.98923 0.95919 0.84844 1.44509 1.57986 1.26467 1.01608 1.19898 1.47660 0.93448 0.87229 0.92294 1.25753 1.01691 0.91881 1.02828 1.70825 1.21749 1.35348 1.26700 0.83642 0.76364 0.75981 0.75358 1.22035 1.21184 1.22005 0.90686 0.89217 0.90708 0.85219 0.85707 0.86001 0.85441 0.85134 0.90837 0.90832 0.91297 0.93811 0.94504 0.90412 0.93495 0.92387 0.91537 0.89762 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 8.75 37.16 0.33 -1.76 16 2 C 0.07 0.92 1.77 -27.89 -0.05 0.87 16 3 H 0.10 1.29 5.53 -51.92 -0.29 1.01 16 4 O -0.28 -4.37 9.34 -39.29 -0.37 -4.74 16 5 C 0.13 1.77 6.60 -39.22 -0.26 1.51 16 6 C -0.21 -2.44 8.26 -39.43 -0.33 -2.76 16 7 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 8 C -0.16 -1.51 10.04 -39.56 -0.40 -1.91 16 9 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 10 C -0.15 -1.79 9.99 -39.43 -0.39 -2.18 16 11 C 0.52 8.92 4.44 -10.99 -0.05 8.87 16 12 O -0.53 -10.84 15.90 -14.31 -0.23 -11.07 16 13 N -0.58 -9.84 1.65 -171.92 -0.28 -10.13 16 14 C 0.08 1.36 4.47 -3.25 -0.01 1.35 16 15 C 0.16 3.21 2.54 -66.60 -0.17 3.05 16 16 H 0.10 2.39 6.24 -51.93 -0.32 2.07 16 17 C -0.13 -2.43 5.39 -26.53 -0.14 -2.57 16 18 C -0.14 -2.54 5.54 -26.95 -0.15 -2.69 16 19 C -0.12 -2.37 5.56 -26.76 -0.15 -2.52 16 20 C 0.15 3.03 3.62 -66.82 -0.24 2.79 16 21 H 0.08 1.61 8.01 -51.93 -0.42 1.19 16 22 C 0.10 1.84 5.89 -3.46 -0.02 1.82 16 23 N -0.58 -13.06 2.38 -155.13 -0.37 -13.43 16 24 C -0.35 -9.04 9.56 -15.06 -0.14 -9.18 16 25 H 0.06 1.54 7.99 -52.49 -0.42 1.12 16 26 C -0.02 -0.48 4.62 -17.43 -0.08 -0.56 16 27 N -0.91 -24.96 12.37 55.49 0.69 -24.27 16 28 Si 1.06 23.56 30.02 -169.99 -5.10 18.46 16 29 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 30 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 31 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 32 H 0.07 0.73 7.02 -51.93 -0.36 0.37 16 33 H 0.09 0.95 5.39 -51.93 -0.28 0.67 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.13 1.35 5.49 -52.49 -0.29 1.07 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.07 0.98 4.60 -51.93 -0.24 0.75 16 42 H 0.07 1.50 6.36 -51.93 -0.33 1.17 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.41 2.49 -52.50 -0.13 1.28 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.08 1.50 6.99 -51.93 -0.36 1.13 16 50 H 0.27 7.48 5.45 -40.82 -0.22 7.25 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -30.39 370.89 -10.24 -40.63 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.11 Total: 7.18 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -3.06 Total: -8.23 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.03 Total: -47.83 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.59 Total: -15.80 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.10 Total: 18.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.39 -10.24 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039994271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.480 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds