Wall clock time and date at job start Wed Apr 1 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46857 * 2 1 4 4 O 1.42900 * 109.47438 * 120.00023 * 2 1 3 5 5 C 1.35902 * 117.00100 * 275.28080 * 4 2 1 6 6 C 1.38734 * 120.05321 * 3.57603 * 5 4 2 7 7 C 1.38151 * 119.94168 * 179.69714 * 6 5 4 8 8 C 1.38264 * 120.05319 * 0.60536 * 7 6 5 9 9 C 1.38262 * 120.11229 * 359.67107 * 8 7 6 10 10 C 1.38152 * 120.05718 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47059 * 240.00512 * 2 1 3 12 12 O 1.21290 * 119.99613 * 245.00117 * 11 2 1 13 13 N 1.34776 * 120.00436 * 64.99552 * 11 2 1 14 14 C 1.46940 * 120.44374 * 359.97438 * 13 11 2 15 15 C 1.54061 * 108.50697 * 125.66589 * 14 13 11 16 16 H 1.09002 * 110.71345 * 172.22089 * 15 14 13 17 17 C 1.53368 * 108.80548 * 294.57758 * 15 14 13 18 18 C 1.53013 * 109.24843 * 60.02140 * 17 15 14 19 19 C 1.52569 * 109.66506 * 60.81264 * 18 17 15 20 20 C 1.53367 * 109.33262 * 299.16952 * 19 18 17 21 21 H 1.08999 * 111.08229 * 177.90252 * 20 19 18 22 22 C 1.46954 * 120.44500 * 180.02562 * 13 11 2 23 23 N 1.47565 * 107.98422 * 56.45271 * 20 19 18 24 24 C 1.36940 * 121.61143 * 122.25912 * 23 20 19 25 25 H 1.08001 * 120.00076 * 26.72153 * 24 23 20 26 26 C 1.38811 * 119.99810 * 206.71709 * 24 23 20 27 27 N 1.31618 * 120.00345 * 30.93076 * 26 24 23 28 28 Si 1.86803 * 119.99986 * 210.92898 * 26 24 23 29 29 H 1.48499 * 109.47389 * 59.99957 * 28 26 24 30 30 H 1.48493 * 109.47256 * 180.02562 * 28 26 24 31 31 H 1.48503 * 109.46725 * 300.00336 * 28 26 24 32 32 H 1.09003 * 109.47128 * 299.99931 * 1 2 3 33 33 H 1.09003 * 109.47381 * 59.99683 * 1 2 3 34 34 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 35 35 H 1.07995 * 120.03301 * 0.02562 * 6 5 4 36 36 H 1.07997 * 119.97273 * 180.32155 * 7 6 5 37 37 H 1.08000 * 119.94361 * 179.69968 * 8 7 6 38 38 H 1.08004 * 119.97541 * 180.02562 * 9 8 7 39 39 H 1.08005 * 120.02742 * 180.02562 * 10 9 8 40 40 H 1.09004 * 109.62716 * 245.50531 * 14 13 11 41 41 H 1.09005 * 109.62461 * 5.87544 * 14 13 11 42 42 H 1.09007 * 109.50726 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.51060 * 300.03935 * 17 15 14 44 44 H 1.08997 * 109.41443 * 180.68510 * 18 17 15 45 45 H 1.08998 * 109.41723 * 300.55204 * 18 17 15 46 46 H 1.08996 * 109.37580 * 179.26704 * 19 18 17 47 47 H 1.08995 * 109.56287 * 59.18009 * 19 18 17 48 48 H 1.09001 * 109.62756 * 114.52783 * 22 13 11 49 49 H 1.08995 * 109.62725 * 353.95040 * 22 13 11 50 50 H 0.97001 * 119.99513 * 5.54373 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1070 0.0611 2.3056 6 6 1.6849 1.3826 2.3194 7 6 1.7825 2.1256 3.4800 8 6 2.3118 1.5569 4.6237 9 6 2.7384 0.2418 4.6109 10 6 2.6372 -0.5073 3.4545 11 6 2.0323 -0.7103 -1.2305 12 8 2.6529 -1.7466 -1.1215 13 7 1.7918 -0.1941 -2.4520 14 6 1.0403 1.0605 -2.5954 15 6 1.8839 2.0432 -3.4298 16 1 1.3068 2.9348 -3.6749 17 6 3.1481 2.4038 -2.6399 18 6 3.9516 1.1309 -2.3654 19 6 4.3632 0.4885 -3.6866 20 6 3.1067 0.1166 -4.4835 21 1 3.3686 -0.3120 -5.4509 22 6 2.2766 -0.8789 -3.6585 23 7 2.2996 1.3394 -4.6585 24 6 1.9576 1.8020 -5.9012 25 1 1.8793 1.1147 -6.7306 26 6 1.7115 3.1544 -6.0949 27 7 2.3428 4.0494 -5.3650 28 14 0.4842 3.7041 -7.3915 29 1 -0.8525 3.1372 -7.0798 30 1 0.4039 5.1868 -7.4000 31 1 0.9261 3.2250 -8.7258 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.2755 1.8287 1.4251 36 1 1.4492 3.1528 3.4927 37 1 2.3917 2.1408 5.5287 38 1 3.1512 -0.2003 5.5057 39 1 2.9703 -1.5346 3.4452 40 1 0.0948 0.8652 -3.1014 41 1 0.8473 1.4862 -1.6106 42 1 3.7542 3.0991 -3.2208 43 1 2.8667 2.8684 -1.6950 44 1 4.8447 1.3825 -1.7935 45 1 3.3401 0.4326 -1.7939 46 1 4.9461 -0.4103 -3.4856 47 1 4.9645 1.1918 -4.2626 48 1 1.4283 -1.2261 -4.2483 49 1 2.8991 -1.7268 -3.3729 50 1 3.0377 3.7697 -4.7487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039994271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:51 Heat of formation + Delta-G solvation = -0.335844 kcal Electronic energy + Delta-G solvation = -32467.187955 eV Core-core repulsion = 28461.064001 eV Total energy + Delta-G solvation = -4006.123954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.59849 -41.12621 -39.50955 -38.22004 -36.00238 -34.93062 -33.94921 -32.83215 -32.13537 -31.70478 -30.59547 -28.58604 -27.29767 -26.07162 -25.01734 -23.79527 -23.34700 -23.18998 -22.69016 -20.90603 -20.42794 -19.59019 -18.83540 -17.87968 -17.56889 -17.03331 -16.77042 -16.32533 -16.21822 -16.12367 -15.76852 -15.50933 -15.36971 -15.08361 -14.82639 -14.66275 -14.45067 -14.28267 -14.16446 -13.95250 -13.74035 -13.61127 -13.37552 -13.28387 -12.94997 -12.70441 -12.53288 -12.45490 -12.33150 -12.08060 -12.01613 -11.94939 -11.92202 -11.77043 -11.70246 -11.35344 -11.14918 -10.78723 -10.39100 -9.94659 -9.66578 -9.19824 -8.71590 -8.20682 -5.29646 0.39130 0.47485 1.33294 1.42365 1.64436 1.68291 1.88342 2.37899 2.68091 2.84547 3.16393 3.19164 3.36301 3.57950 3.76188 3.90686 3.92850 3.97253 3.99042 4.01278 4.03239 4.15296 4.27062 4.28579 4.35465 4.43025 4.51439 4.54575 4.59189 4.60600 4.64144 4.67096 4.71952 4.74345 4.81238 4.89168 5.03363 5.05147 5.09353 5.14848 5.20538 5.27177 5.35322 5.41640 5.48589 5.50223 5.60740 5.83605 5.90753 6.22587 6.38555 6.47690 6.93338 7.07026 7.78991 8.28938 9.05307 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.003335 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.240503 B = 8394.554949 C = 8974.267020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 H 0.110 0.890 4 O -0.310 6.310 5 C 0.105 3.895 6 C -0.220 4.220 7 C -0.083 4.083 8 C -0.161 4.161 9 C -0.081 4.081 10 C -0.171 4.171 11 C 0.520 3.480 12 O -0.567 6.567 13 N -0.582 5.582 14 C 0.094 3.906 15 C 0.157 3.843 16 H 0.077 0.923 17 C -0.119 4.119 18 C -0.134 4.134 19 C -0.120 4.120 20 C 0.150 3.850 21 H 0.073 0.927 22 C 0.112 3.888 23 N -0.598 5.598 24 C -0.356 4.356 25 H 0.048 0.952 26 C -0.062 4.062 27 N -0.933 5.933 28 Si 1.105 2.895 29 H -0.278 1.278 30 H -0.295 1.295 31 H -0.286 1.286 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -4.123 17.861 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.010 3.990 3 H 0.128 0.872 4 O -0.224 6.224 5 C 0.060 3.940 6 C -0.238 4.238 7 C -0.101 4.101 8 C -0.179 4.179 9 C -0.099 4.099 10 C -0.189 4.189 11 C 0.310 3.690 12 O -0.446 6.446 13 N -0.316 5.316 14 C -0.030 4.030 15 C 0.050 3.950 16 H 0.095 0.905 17 C -0.159 4.159 18 C -0.172 4.172 19 C -0.160 4.160 20 C 0.043 3.957 21 H 0.091 0.909 22 C -0.012 4.012 23 N -0.321 5.321 24 C -0.486 4.486 25 H 0.066 0.934 26 C -0.261 4.261 27 N -0.575 5.575 28 Si 0.931 3.069 29 H -0.204 1.204 30 H -0.222 1.222 31 H -0.212 1.212 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.156 0.844 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.575 -3.568 17.165 18.120 hybrid contribution 1.326 -1.113 -0.118 1.735 sum -3.250 -4.682 17.047 17.975 Atomic orbital electron populations 1.22512 0.90467 1.04675 1.05801 1.22262 0.97357 0.96772 0.82621 0.87234 1.86155 1.81560 1.38238 1.16399 1.19395 0.96929 0.91283 0.86381 1.21523 1.07442 0.93569 1.01299 1.21332 0.96497 1.00502 0.91773 1.21466 1.01163 0.95699 0.99531 1.21305 0.97200 0.94239 0.97156 1.20690 1.04725 1.01788 0.91734 1.20249 0.79275 0.84828 0.84696 1.90692 1.42165 1.25218 1.86512 1.48002 1.54092 1.24556 1.04904 1.22753 0.94903 0.83618 1.01712 1.21294 0.93651 0.94450 0.85603 0.90483 1.21939 0.97866 0.96736 0.99330 1.21993 0.99585 0.98116 0.97487 1.21799 0.97935 0.99398 0.96819 1.21331 0.89922 0.88140 0.96309 0.90904 1.22080 0.98785 0.95213 0.85098 1.44671 1.58841 1.27079 1.01520 1.20052 1.46836 0.93295 0.88389 0.93444 1.26833 1.02773 0.92219 1.04225 1.70909 1.22740 1.35748 1.28065 0.82983 0.75227 0.74959 0.73770 1.20417 1.22174 1.21222 0.88695 0.88224 0.91321 0.84360 0.83360 0.83236 0.82882 0.85490 0.90271 0.87258 0.94612 0.91088 0.93914 0.89549 0.92240 0.94676 0.91067 0.89658 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.56 8.75 71.98 0.63 -2.93 16 2 C 0.07 1.82 1.77 29.85 0.05 1.87 16 3 H 0.11 2.59 5.53 -2.38 -0.01 2.57 16 4 O -0.31 -9.23 9.34 -73.45 -0.69 -9.92 16 5 C 0.10 2.63 6.60 22.50 0.15 2.78 16 6 C -0.22 -4.51 8.26 22.37 0.18 -4.33 16 7 C -0.08 -1.38 10.04 22.26 0.22 -1.15 16 8 C -0.16 -2.42 10.04 22.28 0.22 -2.20 16 9 C -0.08 -1.36 10.04 22.25 0.22 -1.13 16 10 C -0.17 -3.82 9.99 22.37 0.22 -3.60 16 11 C 0.52 17.12 4.44 87.66 0.39 17.50 16 12 O -0.57 -22.84 15.90 15.93 0.25 -22.58 16 13 N -0.58 -18.81 1.65 -816.20 -1.34 -20.15 16 14 C 0.09 2.87 4.47 86.65 0.39 3.26 16 15 C 0.16 6.28 2.54 45.27 0.12 6.39 16 16 H 0.08 3.55 6.24 -2.39 -0.01 3.54 16 17 C -0.12 -4.52 5.39 30.72 0.17 -4.35 16 18 C -0.13 -4.86 5.54 30.46 0.17 -4.69 16 19 C -0.12 -4.64 5.56 30.57 0.17 -4.47 16 20 C 0.15 5.98 3.62 45.13 0.16 6.14 16 21 H 0.07 2.97 8.01 -2.39 -0.02 2.95 16 22 C 0.11 3.91 5.89 86.51 0.51 4.42 16 23 N -0.60 -27.06 2.38 -644.70 -1.54 -28.59 16 24 C -0.36 -18.47 9.56 84.03 0.80 -17.67 16 25 H 0.05 2.52 7.99 -2.91 -0.02 2.50 16 26 C -0.06 -3.26 4.62 84.86 0.39 -2.87 16 27 N -0.93 -52.44 12.37 21.65 0.27 -52.18 16 28 Si 1.10 47.88 30.02 68.60 2.06 49.94 16 29 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 30 H -0.30 -13.18 7.11 99.48 0.71 -12.47 16 31 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 32 H 0.09 1.55 7.02 -2.39 -0.02 1.53 16 33 H 0.10 1.77 5.39 -2.39 -0.01 1.76 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.14 2.46 5.49 -2.91 -0.02 2.45 16 36 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.11 2.58 4.60 -2.38 -0.01 2.57 16 42 H 0.04 1.59 6.36 -2.38 -0.02 1.57 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.09 3.04 2.49 -3.51 -0.01 3.03 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.09 2.99 6.99 -2.39 -0.02 2.97 16 50 H 0.26 14.89 5.45 -92.71 -0.51 14.39 16 Total: -1.00 -67.35 370.89 5.41 -61.95 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 1.22 Total: 28.56 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 5.17 Total: -7.02 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -2.61 Total: -100.92 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.43 Total: -32.50 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.06 Total: 49.94 kcal Total: -67.35 5.41 -61.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039994271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.610 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds