Wall clock time and date at job start Wed Apr 1 2020 03:20:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08991 * 109.47437 * 2 1
4 4 O 1.42902 * 109.46981 * 239.99782 * 2 1 3
5 5 C 1.35897 * 117.00112 * 88.04703 * 4 2 1
6 6 C 1.38729 * 120.05646 * 173.87440 * 5 4 2
7 7 C 1.38150 * 119.94218 * 179.74503 * 6 5 4
8 8 C 1.38267 * 120.05525 * 0.50331 * 7 6 5
9 9 C 1.38269 * 120.10980 * 359.77497 * 8 7 6
10 10 C 1.38136 * 120.05919 * 359.97079 * 9 8 7
11 11 C 1.50706 * 109.46889 * 120.00299 * 2 1 3
12 12 O 1.21276 * 120.00403 * 114.99556 * 11 2 1
13 13 N 1.34773 * 119.99809 * 294.99773 * 11 2 1
14 14 C 1.46801 * 119.52387 * 359.72656 * 13 11 2
15 15 C 1.53473 * 107.54481 * 232.26428 * 14 13 11
16 16 C 1.52731 * 108.39088 * 301.73762 * 15 14 13
17 17 C 1.52959 * 110.88353 * 63.83703 * 16 15 14
18 18 H 1.09012 * 111.91452 * 70.37922 * 17 16 15
19 19 C 1.55029 * 107.08889 * 194.29633 * 17 16 15
20 20 N 1.47099 * 107.12450 * 92.70046 * 19 17 16
21 21 C 1.36933 * 125.64680 * 180.12657 * 20 19 17
22 22 H 1.07999 * 119.99835 * 328.03018 * 21 20 19
23 23 C 1.38814 * 120.00057 * 148.03310 * 21 20 19
24 24 N 1.31619 * 119.99785 * 163.34727 * 23 21 20
25 25 Si 1.86794 * 119.99945 * 343.34070 * 23 21 20
26 26 H 1.48500 * 109.47174 * 86.30591 * 25 23 21
27 27 H 1.48504 * 109.47002 * 206.30189 * 25 23 21
28 28 H 1.48492 * 109.47238 * 326.30525 * 25 23 21
29 29 C 1.47677 * 108.70662 * 0.16014 * 20 19 17
30 30 C 1.45013 * 119.52348 * 180.02562 * 13 11 2
31 31 H 1.09003 * 109.86911 * 12.27629 * 30 13 11
32 32 H 1.08995 * 109.47035 * 300.00389 * 1 2 3
33 33 H 1.08999 * 109.46595 * 60.00075 * 1 2 3
34 34 H 1.09000 * 109.47455 * 179.97438 * 1 2 3
35 35 H 1.07998 * 120.03110 * 359.97438 * 6 5 4
36 36 H 1.07999 * 119.97379 * 180.28045 * 7 6 5
37 37 H 1.07998 * 119.94592 * 179.74673 * 8 7 6
38 38 H 1.07998 * 119.96857 * 179.97438 * 9 8 7
39 39 H 1.08003 * 120.03224 * 179.97438 * 10 9 8
40 40 H 1.09002 * 109.83758 * 351.77018 * 14 13 11
41 41 H 1.08993 * 109.84535 * 112.74856 * 14 13 11
42 42 H 1.08997 * 109.68431 * 182.01141 * 15 14 13
43 43 H 1.09001 * 109.68172 * 61.45462 * 15 14 13
44 44 H 1.08999 * 109.19697 * 303.48087 * 16 15 14
45 45 H 1.08994 * 109.19401 * 184.20200 * 16 15 14
46 46 H 1.09002 * 109.90662 * 212.07813 * 19 17 16
47 47 H 1.09002 * 109.90006 * 333.33039 * 19 17 16
48 48 H 0.97000 * 120.00017 * 179.97438 * 24 23 21
49 49 H 1.09002 * 110.45463 * 264.74671 * 29 20 19
50 50 H 1.09003 * 110.45137 * 142.20367 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0063 -0.6737 -1.1668
5 6 2.1731 0.0765 -2.2876
6 6 2.7510 -0.4823 -3.4181
7 6 2.9146 0.2810 -4.5579
8 6 2.5123 1.6038 -4.5691
9 6 1.9413 2.1647 -3.4417
10 6 1.7707 1.4043 -2.3011
11 6 2.0323 -0.7105 1.2305
12 8 2.6528 -1.7468 1.1216
13 7 1.7918 -0.1943 2.4520
14 6 1.0448 1.0638 2.5714
15 6 1.8754 2.0139 3.4448
16 6 2.1083 1.3450 4.7979
17 6 2.9422 0.0724 4.6407
18 1 3.9767 0.2938 4.3778
19 6 2.8199 -0.7193 5.9680
20 7 1.7016 -1.6616 5.8088
21 6 1.2621 -2.5461 6.7573
22 1 1.9614 -2.9790 7.4571
23 6 -0.0823 -2.8862 6.8191
24 7 -0.4606 -3.9552 7.4875
25 14 -1.3545 -1.8269 5.9540
26 1 -1.4839 -2.2638 4.5406
27 1 -2.6650 -1.9693 6.6380
28 1 -0.9262 -0.4057 5.9955
29 6 1.1319 -1.4963 4.4564
30 6 2.2804 -0.8862 3.6290
31 1 2.9880 -1.6618 3.3358
32 1 -0.3633 0.5139 0.8899
33 1 -0.3632 0.5138 -0.8900
34 1 -0.3634 -1.0276 -0.0005
35 1 3.0694 -1.5142 -3.4085
36 1 3.3603 -0.1548 -5.4398
37 1 2.6448 2.2001 -5.4598
38 1 1.6283 3.1983 -3.4528
39 1 1.3250 1.8429 -1.4206
40 1 0.8980 1.5019 1.5842
41 1 0.0794 0.8776 3.0419
42 1 1.3348 2.9497 3.5861
43 1 2.8333 2.2118 2.9636
44 1 1.1460 1.0902 5.2421
45 1 2.6329 2.0385 5.4550
46 1 3.7425 -1.2672 6.1598
47 1 2.6140 -0.0346 6.7908
48 1 -1.4000 -4.1927 7.5311
49 1 0.2792 -0.8178 4.4826
50 1 0.8382 -2.4625 4.0461
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001050196567.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:20:17
Heat of formation + Delta-G solvation = -4.434442 kcal
Electronic energy + Delta-G solvation = -31367.811032 eV
Core-core repulsion = 27361.509349 eV
Total energy + Delta-G solvation = -4006.301682 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.13930 -40.14817 -38.46051 -37.31667 -35.70987 -33.35202 -32.34983 -32.06592
-31.10562 -30.05306 -29.75251 -27.86726 -25.91915 -25.06334 -23.74664 -23.00572
-22.59838 -22.22560 -20.63532 -20.02068 -18.76494 -18.53647 -17.19772 -16.96082
-16.66927 -16.09243 -15.94236 -15.55692 -15.16433 -14.80101 -14.65642 -14.53792
-14.36174 -13.88303 -13.78090 -13.59716 -13.56189 -13.19904 -12.93646 -12.76013
-12.63221 -12.47433 -12.22437 -12.02921 -11.97309 -11.86868 -11.53706 -11.37822
-11.27589 -11.13477 -11.05972 -10.81798 -10.51229 -10.39041 -10.26231 -9.93720
-9.69036 -9.54441 -9.30959 -8.67817 -8.50170 -8.47586 -6.91534 -5.99882
-3.41408 1.02389 1.14605 2.39805 2.52019 3.28522 3.32331 3.39297
3.43838 3.49252 4.13744 4.33639 4.49893 4.54203 4.58537 4.60028
4.63746 4.80243 4.82991 4.86291 4.98141 5.05937 5.08139 5.09821
5.22913 5.25194 5.27708 5.31673 5.37991 5.39530 5.57572 5.67144
5.70125 5.77939 5.79954 5.84708 5.91476 5.94142 6.01603 6.09151
6.12380 6.22607 6.39373 6.44132 6.50096 6.53501 6.59576 6.73842
6.77073 7.12054 7.36833 7.81313 8.13457 8.30869 8.80564 9.63667
10.17143 11.16403
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.018488 B = 0.002892 C = 0.002798
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1514.131350 B = 9678.428438 C =10003.008110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.069 3.931
3 H 0.098 0.902
4 O -0.283 6.283
5 C 0.133 3.867
6 C -0.150 4.150
7 C -0.080 4.080
8 C -0.162 4.162
9 C -0.080 4.080
10 C -0.214 4.214
11 C 0.515 3.485
12 O -0.513 6.513
13 N -0.589 5.589
14 C 0.094 3.906
15 C -0.133 4.133
16 C -0.115 4.115
17 C -0.107 4.107
18 H 0.084 0.916
19 C 0.137 3.863
20 N -0.604 5.604
21 C -0.244 4.244
22 H 0.088 0.912
23 C 0.030 3.970
24 N -0.907 5.907
25 Si 0.887 3.113
26 H -0.286 1.286
27 H -0.301 1.301
28 H -0.273 1.273
29 C 0.112 3.888
30 C 0.131 3.869
31 H 0.108 0.892
32 H 0.086 0.914
33 H 0.075 0.925
34 H 0.078 0.922
35 H 0.132 0.868
36 H 0.129 0.871
37 H 0.122 0.878
38 H 0.124 0.876
39 H 0.129 0.871
40 H 0.085 0.915
41 H 0.076 0.924
42 H 0.075 0.925
43 H 0.067 0.933
44 H 0.072 0.928
45 H 0.066 0.934
46 H 0.034 0.966
47 H 0.038 0.962
48 H 0.264 0.736
49 H 0.026 0.974
50 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.878 17.530 -20.916 27.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C 0.009 3.991
3 H 0.116 0.884
4 O -0.195 6.195
5 C 0.087 3.913
6 C -0.169 4.169
7 C -0.098 4.098
8 C -0.181 4.181
9 C -0.098 4.098
10 C -0.233 4.233
11 C 0.300 3.700
12 O -0.387 6.387
13 N -0.323 5.323
14 C -0.028 4.028
15 C -0.171 4.171
16 C -0.153 4.153
17 C -0.127 4.127
18 H 0.102 0.898
19 C 0.012 3.988
20 N -0.331 5.331
21 C -0.372 4.372
22 H 0.105 0.895
23 C -0.169 4.169
24 N -0.549 5.549
25 Si 0.717 3.283
26 H -0.212 1.212
27 H -0.229 1.229
28 H -0.199 1.199
29 C -0.014 4.014
30 C 0.027 3.973
31 H 0.125 0.875
32 H 0.105 0.895
33 H 0.094 0.906
34 H 0.097 0.903
35 H 0.150 0.850
36 H 0.147 0.853
37 H 0.140 0.860
38 H 0.142 0.858
39 H 0.146 0.854
40 H 0.103 0.897
41 H 0.095 0.905
42 H 0.094 0.906
43 H 0.086 0.914
44 H 0.091 0.909
45 H 0.084 0.916
46 H 0.052 0.948
47 H 0.056 0.944
48 H 0.074 0.926
49 H 0.044 0.956
50 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 4.085 16.567 -20.781 26.889
hybrid contribution -1.053 0.787 -0.307 1.349
sum 3.032 17.354 -21.087 27.478
Atomic orbital electron populations
1.22514 0.92456 1.05115 1.04087 1.22211 0.95912 0.96835 0.84152
0.88414 1.86238 1.80755 1.35754 1.16760 1.19136 0.94854 0.90161
0.87101 1.20517 1.03261 1.01511 0.91570 1.20992 0.97819 0.93880
0.97119 1.21071 1.02470 0.95703 0.98818 1.20942 0.97025 0.99429
0.92385 1.21301 1.07507 0.93982 1.00470 1.20064 0.80357 0.85625
0.83924 1.90746 1.39397 1.22747 1.85846 1.47383 1.55344 1.24198
1.05345 1.22132 0.95811 0.84060 1.00813 1.21911 1.00364 0.97971
0.96845 1.21553 1.01349 0.96171 0.96218 1.22468 0.98862 0.95022
0.96361 0.89750 1.21654 0.92236 0.91295 0.93605 1.44599 1.37066
1.41810 1.09664 1.18577 0.92020 1.16591 1.10011 0.89477 1.25349
0.96938 0.97249 0.97403 1.69789 1.16577 1.24141 1.44390 0.86799
0.80978 0.81759 0.78726 1.21238 1.22889 1.19885 1.22068 0.94109
0.98729 0.86483 1.21717 0.97571 0.94537 0.83466 0.87453 0.89502
0.90599 0.90287 0.84968 0.85331 0.85958 0.85787 0.85355 0.89657
0.90539 0.90613 0.91384 0.90894 0.91570 0.94819 0.94364 0.92577
0.95618 0.92468
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.83 8.81 37.16 0.33 -1.50 16
2 C 0.07 0.82 1.78 -27.88 -0.05 0.77 16
3 H 0.10 0.90 5.32 -51.93 -0.28 0.62 16
4 O -0.28 -3.94 9.33 -39.28 -0.37 -4.30 16
5 C 0.13 1.54 6.63 -39.21 -0.26 1.28 16
6 C -0.15 -1.58 9.99 -39.43 -0.39 -1.98 16
7 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16
8 C -0.16 -1.25 10.04 -39.56 -0.40 -1.65 16
9 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16
10 C -0.21 -1.98 8.39 -39.43 -0.33 -2.31 16
11 C 0.51 8.15 7.08 -10.98 -0.08 8.07 16
12 O -0.51 -10.42 15.82 -14.30 -0.23 -10.64 16
13 N -0.59 -8.77 2.74 -165.21 -0.45 -9.22 16
14 C 0.09 1.04 4.63 -3.63 -0.02 1.03 16
15 C -0.13 -1.35 6.11 -26.62 -0.16 -1.51 16
16 C -0.12 -1.54 4.65 -26.89 -0.13 -1.67 16
17 C -0.11 -1.68 3.60 -88.89 -0.32 -2.00 16
18 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16
19 C 0.14 2.66 6.61 -2.64 -0.02 2.65 16
20 N -0.60 -14.53 3.03 -169.84 -0.51 -15.05 16
21 C -0.24 -6.95 10.54 -15.06 -0.16 -7.11 16
22 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16
23 C 0.03 0.89 5.46 -17.43 -0.10 0.80 16
24 N -0.91 -28.06 13.97 55.49 0.78 -27.29 16
25 Si 0.89 22.50 24.50 -169.99 -4.17 18.34 16
26 H -0.29 -7.13 7.07 56.52 0.40 -6.73 16
27 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16
28 H -0.27 -6.61 6.74 56.52 0.38 -6.23 16
29 C 0.11 2.46 4.07 -2.80 -0.01 2.45 16
30 C 0.13 2.35 3.04 -67.46 -0.21 2.15 16
31 H 0.11 2.15 6.95 -51.93 -0.36 1.79 16
32 H 0.09 0.74 5.40 -51.93 -0.28 0.46 16
33 H 0.08 0.61 7.24 -51.93 -0.38 0.23 16
34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16
36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16
37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16
38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16
39 H 0.13 0.95 5.54 -52.48 -0.29 0.66 16
40 H 0.09 0.66 4.63 -51.93 -0.24 0.42 16
41 H 0.08 0.90 7.57 -51.93 -0.39 0.51 16
42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
44 H 0.07 1.17 7.21 -51.93 -0.37 0.80 16
45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
47 H 0.04 0.73 7.74 -51.93 -0.40 0.33 16
48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
49 H 0.03 0.57 4.00 -51.93 -0.21 0.37 16
50 H 0.06 1.40 7.87 -51.93 -0.41 1.00 16
LS Contribution 378.74 15.07 5.71 5.71
Total: -1.00 -34.80 378.74 -9.75 -44.55
By element:
Atomic # 1 Polarization: 7.95 SS G_CDS: -7.42 Total: 0.53 kcal
Atomic # 6 Polarization: 0.48 SS G_CDS: -3.09 Total: -2.61 kcal
Atomic # 7 Polarization: -51.37 SS G_CDS: -0.19 Total: -51.56 kcal
Atomic # 8 Polarization: -14.36 SS G_CDS: -0.59 Total: -14.95 kcal
Atomic # 14 Polarization: 22.50 SS G_CDS: -4.17 Total: 18.34 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -34.80 -9.75 -44.55 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050196567.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.111 kcal
(2) G-P(sol) polarization free energy of solvation -34.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.316 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.546 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds