Wall clock time and date at job start Wed Apr 1 2020 03:20:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08991 * 109.47437 * 2 1
4 4 O 1.42902 * 109.46981 * 239.99782 * 2 1 3
5 5 C 1.35897 * 117.00112 * 88.04703 * 4 2 1
6 6 C 1.38729 * 120.05646 * 173.87440 * 5 4 2
7 7 C 1.38150 * 119.94218 * 179.74503 * 6 5 4
8 8 C 1.38267 * 120.05525 * 0.50331 * 7 6 5
9 9 C 1.38269 * 120.10980 * 359.77497 * 8 7 6
10 10 C 1.38136 * 120.05919 * 359.97079 * 9 8 7
11 11 C 1.50706 * 109.46889 * 120.00299 * 2 1 3
12 12 O 1.21276 * 120.00403 * 114.99556 * 11 2 1
13 13 N 1.34773 * 119.99809 * 294.99773 * 11 2 1
14 14 C 1.46801 * 119.52387 * 359.72656 * 13 11 2
15 15 C 1.53473 * 107.54481 * 232.26428 * 14 13 11
16 16 C 1.52731 * 108.39088 * 301.73762 * 15 14 13
17 17 C 1.52959 * 110.88353 * 63.83703 * 16 15 14
18 18 H 1.09012 * 111.91452 * 70.37922 * 17 16 15
19 19 C 1.55029 * 107.08889 * 194.29633 * 17 16 15
20 20 N 1.47099 * 107.12450 * 92.70046 * 19 17 16
21 21 C 1.36933 * 125.64680 * 180.12657 * 20 19 17
22 22 H 1.07999 * 119.99835 * 328.03018 * 21 20 19
23 23 C 1.38814 * 120.00057 * 148.03310 * 21 20 19
24 24 N 1.31619 * 119.99785 * 163.34727 * 23 21 20
25 25 Si 1.86794 * 119.99945 * 343.34070 * 23 21 20
26 26 H 1.48500 * 109.47174 * 86.30591 * 25 23 21
27 27 H 1.48504 * 109.47002 * 206.30189 * 25 23 21
28 28 H 1.48492 * 109.47238 * 326.30525 * 25 23 21
29 29 C 1.47677 * 108.70662 * 0.16014 * 20 19 17
30 30 C 1.45013 * 119.52348 * 180.02562 * 13 11 2
31 31 H 1.09003 * 109.86911 * 12.27629 * 30 13 11
32 32 H 1.08995 * 109.47035 * 300.00389 * 1 2 3
33 33 H 1.08999 * 109.46595 * 60.00075 * 1 2 3
34 34 H 1.09000 * 109.47455 * 179.97438 * 1 2 3
35 35 H 1.07998 * 120.03110 * 359.97438 * 6 5 4
36 36 H 1.07999 * 119.97379 * 180.28045 * 7 6 5
37 37 H 1.07998 * 119.94592 * 179.74673 * 8 7 6
38 38 H 1.07998 * 119.96857 * 179.97438 * 9 8 7
39 39 H 1.08003 * 120.03224 * 179.97438 * 10 9 8
40 40 H 1.09002 * 109.83758 * 351.77018 * 14 13 11
41 41 H 1.08993 * 109.84535 * 112.74856 * 14 13 11
42 42 H 1.08997 * 109.68431 * 182.01141 * 15 14 13
43 43 H 1.09001 * 109.68172 * 61.45462 * 15 14 13
44 44 H 1.08999 * 109.19697 * 303.48087 * 16 15 14
45 45 H 1.08994 * 109.19401 * 184.20200 * 16 15 14
46 46 H 1.09002 * 109.90662 * 212.07813 * 19 17 16
47 47 H 1.09002 * 109.90006 * 333.33039 * 19 17 16
48 48 H 0.97000 * 120.00017 * 179.97438 * 24 23 21
49 49 H 1.09002 * 110.45463 * 264.74671 * 29 20 19
50 50 H 1.09003 * 110.45137 * 142.20367 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0063 -0.6737 -1.1668
5 6 2.1731 0.0765 -2.2876
6 6 2.7510 -0.4823 -3.4181
7 6 2.9146 0.2810 -4.5579
8 6 2.5123 1.6038 -4.5691
9 6 1.9413 2.1647 -3.4417
10 6 1.7707 1.4043 -2.3011
11 6 2.0323 -0.7105 1.2305
12 8 2.6528 -1.7468 1.1216
13 7 1.7918 -0.1943 2.4520
14 6 1.0448 1.0638 2.5714
15 6 1.8754 2.0139 3.4448
16 6 2.1083 1.3450 4.7979
17 6 2.9422 0.0724 4.6407
18 1 3.9767 0.2938 4.3778
19 6 2.8199 -0.7193 5.9680
20 7 1.7016 -1.6616 5.8088
21 6 1.2621 -2.5461 6.7573
22 1 1.9614 -2.9790 7.4571
23 6 -0.0823 -2.8862 6.8191
24 7 -0.4606 -3.9552 7.4875
25 14 -1.3545 -1.8269 5.9540
26 1 -1.4839 -2.2638 4.5406
27 1 -2.6650 -1.9693 6.6380
28 1 -0.9262 -0.4057 5.9955
29 6 1.1319 -1.4963 4.4564
30 6 2.2804 -0.8862 3.6290
31 1 2.9880 -1.6618 3.3358
32 1 -0.3633 0.5139 0.8899
33 1 -0.3632 0.5138 -0.8900
34 1 -0.3634 -1.0276 -0.0005
35 1 3.0694 -1.5142 -3.4085
36 1 3.3603 -0.1548 -5.4398
37 1 2.6448 2.2001 -5.4598
38 1 1.6283 3.1983 -3.4528
39 1 1.3250 1.8429 -1.4206
40 1 0.8980 1.5019 1.5842
41 1 0.0794 0.8776 3.0419
42 1 1.3348 2.9497 3.5861
43 1 2.8333 2.2118 2.9636
44 1 1.1460 1.0902 5.2421
45 1 2.6329 2.0385 5.4550
46 1 3.7425 -1.2672 6.1598
47 1 2.6140 -0.0346 6.7908
48 1 -1.4000 -4.1927 7.5311
49 1 0.2792 -0.8178 4.4826
50 1 0.8382 -2.4625 4.0461
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001050196567.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:20:16
Heat of formation + Delta-G solvation = -26.460413 kcal
Electronic energy + Delta-G solvation = -31368.766149 eV
Core-core repulsion = 27361.509349 eV
Total energy + Delta-G solvation = -4007.256800 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.23224 -41.11210 -39.66692 -38.22197 -37.12552 -34.85925 -33.81352 -33.24470
-31.84025 -31.44449 -30.57248 -29.38720 -27.32067 -26.31478 -24.97931 -23.93164
-23.58085 -23.08243 -22.18873 -21.25482 -19.76190 -19.55260 -19.01164 -18.24734
-17.79111 -17.19515 -16.85394 -16.77664 -16.38730 -16.04742 -15.88543 -15.52131
-15.36850 -15.24380 -15.02838 -14.72117 -14.40521 -14.30385 -14.17287 -14.15402
-13.75979 -13.63346 -13.50521 -13.36218 -13.11073 -13.00933 -12.92345 -12.51133
-12.45262 -12.32694 -12.17349 -12.11617 -11.77996 -11.71788 -11.70539 -11.52551
-11.24655 -10.86932 -10.84082 -9.93667 -9.78513 -9.19327 -8.94758 -8.27102
-5.66180 0.40306 0.47985 1.23998 1.29015 1.30916 1.40611 1.41936
2.33887 2.35926 2.85576 2.99248 3.14734 3.29215 3.49896 3.58269
3.71606 3.80693 3.81855 3.93668 3.96078 4.00689 4.01106 4.20621
4.29220 4.29921 4.36429 4.45130 4.52145 4.56970 4.57729 4.61832
4.67964 4.74031 4.74720 4.82456 4.90408 4.98151 5.04693 5.09119
5.10494 5.17170 5.24333 5.36096 5.42504 5.49112 5.50183 5.62028
5.72234 5.84990 6.05856 6.18065 6.41475 6.68936 6.94463 7.42978
8.05038 8.93146
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.018488 B = 0.002892 C = 0.002798
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1514.131350 B = 9678.428438 C =10003.008110
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.076 3.924
3 H 0.135 0.865
4 O -0.318 6.318
5 C 0.103 3.897
6 C -0.176 4.176
7 C -0.084 4.084
8 C -0.162 4.162
9 C -0.080 4.080
10 C -0.214 4.214
11 C 0.507 3.493
12 O -0.573 6.573
13 N -0.585 5.585
14 C 0.081 3.919
15 C -0.123 4.123
16 C -0.115 4.115
17 C -0.090 4.090
18 H 0.111 0.889
19 C 0.131 3.869
20 N -0.622 5.622
21 C -0.242 4.242
22 H 0.051 0.949
23 C -0.030 4.030
24 N -0.955 5.955
25 Si 0.952 3.048
26 H -0.283 1.283
27 H -0.301 1.301
28 H -0.248 1.248
29 C 0.114 3.886
30 C 0.142 3.858
31 H 0.076 0.924
32 H 0.106 0.894
33 H 0.101 0.899
34 H 0.051 0.949
35 H 0.119 0.881
36 H 0.148 0.852
37 H 0.149 0.851
38 H 0.155 0.845
39 H 0.151 0.849
40 H 0.127 0.873
41 H 0.073 0.927
42 H 0.112 0.888
43 H 0.084 0.916
44 H 0.046 0.954
45 H 0.089 0.911
46 H 0.027 0.973
47 H 0.047 0.953
48 H 0.265 0.735
49 H 0.036 0.964
50 H 0.016 0.984
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.310 23.266 -23.694 33.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.017 3.983
3 H 0.152 0.848
4 O -0.231 6.231
5 C 0.059 3.941
6 C -0.195 4.195
7 C -0.101 4.101
8 C -0.180 4.180
9 C -0.097 4.097
10 C -0.233 4.233
11 C 0.295 3.705
12 O -0.451 6.451
13 N -0.317 5.317
14 C -0.039 4.039
15 C -0.161 4.161
16 C -0.153 4.153
17 C -0.109 4.109
18 H 0.129 0.871
19 C 0.006 3.994
20 N -0.349 5.349
21 C -0.371 4.371
22 H 0.068 0.932
23 C -0.226 4.226
24 N -0.600 5.600
25 Si 0.779 3.221
26 H -0.210 1.210
27 H -0.229 1.229
28 H -0.172 1.172
29 C -0.012 4.012
30 C 0.036 3.964
31 H 0.094 0.906
32 H 0.124 0.876
33 H 0.120 0.880
34 H 0.071 0.929
35 H 0.137 0.863
36 H 0.166 0.834
37 H 0.167 0.833
38 H 0.173 0.827
39 H 0.168 0.832
40 H 0.145 0.855
41 H 0.091 0.909
42 H 0.130 0.870
43 H 0.102 0.898
44 H 0.065 0.935
45 H 0.108 0.892
46 H 0.046 0.954
47 H 0.065 0.935
48 H 0.074 0.926
49 H 0.054 0.946
50 H 0.035 0.965
Dipole moment (debyes) X Y Z Total
from point charges 3.527 22.377 -23.578 32.697
hybrid contribution -0.745 -1.075 0.510 1.404
sum 2.782 21.302 -23.068 31.522
Atomic orbital electron populations
1.22543 0.90801 1.04154 1.06245 1.22271 0.96851 0.97397 0.81784
0.84768 1.86194 1.81604 1.37485 1.17851 1.19413 0.96705 0.91430
0.86572 1.20689 1.04506 1.01583 0.92739 1.21274 0.97551 0.94391
0.96928 1.21481 1.01168 0.95392 0.99909 1.21366 0.95978 1.00716
0.91674 1.21551 1.07044 0.92801 1.01886 1.20964 0.79238 0.85015
0.85298 1.90717 1.42124 1.25506 1.86772 1.47443 1.55185 1.25151
1.03963 1.22595 0.95296 0.82372 1.03681 1.21922 1.01514 0.98466
0.94200 1.21562 0.99544 0.95223 0.98933 1.22449 1.00733 0.95187
0.92564 0.87134 1.21853 0.90067 0.90974 0.96487 1.44659 1.38036
1.42346 1.09875 1.18477 0.91678 1.16926 1.10024 0.93176 1.26052
0.99108 0.98355 0.99048 1.69932 1.16938 1.26001 1.47126 0.85767
0.77878 0.81054 0.77372 1.20996 1.22890 1.17229 1.22023 0.95944
0.97194 0.85990 1.21255 0.95314 0.95016 0.84815 0.90583 0.87558
0.88044 0.92937 0.86299 0.83411 0.83303 0.82694 0.83163 0.85479
0.90876 0.87015 0.89777 0.93546 0.89246 0.95438 0.93518 0.92643
0.94641 0.96509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.05 8.81 71.98 0.63 -2.42 16
2 C 0.08 1.65 1.78 29.85 0.05 1.70 16
3 H 0.14 1.84 5.32 -2.39 -0.01 1.83 16
4 O -0.32 -8.78 9.33 -73.41 -0.68 -9.46 16
5 C 0.10 2.27 6.63 22.51 0.15 2.42 16
6 C -0.18 -3.70 9.99 22.37 0.22 -3.48 16
7 C -0.08 -1.24 10.04 22.26 0.22 -1.02 16
8 C -0.16 -1.89 10.04 22.28 0.22 -1.67 16
9 C -0.08 -0.90 10.04 22.25 0.22 -0.68 16
10 C -0.21 -3.17 8.39 22.37 0.19 -2.98 16
11 C 0.51 15.79 7.08 87.66 0.62 16.41 16
12 O -0.57 -24.39 15.82 15.97 0.25 -24.13 16
13 N -0.59 -16.39 2.74 -795.00 -2.17 -18.57 16
14 C 0.08 1.42 4.63 86.48 0.40 1.82 16
15 C -0.12 -1.78 6.11 30.66 0.19 -1.59 16
16 C -0.12 -2.60 4.65 30.49 0.14 -2.46 16
17 C -0.09 -2.64 3.60 -9.68 -0.03 -2.67 16
18 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16
19 C 0.13 5.06 6.61 86.96 0.57 5.64 16
20 N -0.62 -30.79 3.03 -691.25 -2.09 -32.89 16
21 C -0.24 -14.47 10.54 84.03 0.89 -13.58 16
22 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16
23 C -0.03 -1.82 5.46 84.86 0.46 -1.36 16
24 N -0.95 -61.91 13.97 21.65 0.30 -61.61 16
25 Si 0.95 47.43 24.50 68.60 1.68 49.11 16
26 H -0.28 -13.89 7.07 99.48 0.70 -13.18 16
27 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16
28 H -0.25 -11.24 6.74 99.48 0.67 -10.57 16
29 C 0.11 5.11 4.07 86.54 0.35 5.46 16
30 C 0.14 5.07 3.04 46.09 0.14 5.21 16
31 H 0.08 3.20 6.95 -2.39 -0.02 3.18 16
32 H 0.11 1.35 5.40 -2.39 -0.01 1.33 16
33 H 0.10 1.22 7.24 -2.39 -0.02 1.20 16
34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16
36 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16
37 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16
38 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16
39 H 0.15 1.40 5.54 -2.91 -0.02 1.39 16
40 H 0.13 1.17 4.63 -2.39 -0.01 1.16 16
41 H 0.07 1.39 7.57 -2.39 -0.02 1.37 16
42 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16
43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
44 H 0.05 1.32 7.21 -2.39 -0.02 1.31 16
45 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16
46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
47 H 0.05 1.74 7.74 -2.39 -0.02 1.73 16
48 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16
49 H 0.04 1.54 4.00 -2.39 -0.01 1.53 16
50 H 0.02 0.86 7.87 -2.39 -0.02 0.84 16
Total: -1.00 -84.82 378.74 3.84 -80.98
By element:
Atomic # 1 Polarization: 10.93 SS G_CDS: 0.91 Total: 11.83 kcal
Atomic # 6 Polarization: -0.91 SS G_CDS: 5.65 Total: 4.74 kcal
Atomic # 7 Polarization: -109.10 SS G_CDS: -3.97 Total: -113.06 kcal
Atomic # 8 Polarization: -33.17 SS G_CDS: -0.43 Total: -33.60 kcal
Atomic # 14 Polarization: 47.43 SS G_CDS: 1.68 Total: 49.11 kcal
Total: -84.82 3.84 -80.98 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050196567.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.515 kcal
(2) G-P(sol) polarization free energy of solvation -84.816 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.976 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.460 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds