Wall clock time and date at job start Wed Apr 1 2020 03:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47307 * 2 1 4 4 O 1.42907 * 109.47007 * 119.99470 * 2 1 3 5 5 C 1.35899 * 117.00358 * 275.10715 * 4 2 1 6 6 C 1.38728 * 120.05121 * 5.25402 * 5 4 2 7 7 C 1.38153 * 119.93854 * 179.70367 * 6 5 4 8 8 C 1.38262 * 120.05363 * 0.59279 * 7 6 5 9 9 C 1.38260 * 120.11353 * 359.67784 * 8 7 6 10 10 C 1.38145 * 120.05790 * 0.02744 * 9 8 7 11 11 C 1.50702 * 109.47450 * 239.99634 * 2 1 3 12 12 O 1.21281 * 119.99845 * 251.07727 * 11 2 1 13 13 N 1.34774 * 119.99942 * 71.07600 * 11 2 1 14 14 C 1.44749 * 117.18494 * 175.49122 * 13 11 2 15 15 C 1.51485 * 111.70796 * 213.73926 * 14 13 11 16 16 C 1.49438 * 114.09054 * 317.18187 * 15 14 13 17 17 H 1.09000 * 107.68260 * 165.91077 * 16 15 14 18 18 C 1.54526 * 112.97325 * 284.23166 * 16 15 14 19 19 C 1.55248 * 100.54566 * 166.31562 * 18 16 15 20 20 N 1.47476 * 105.14364 * 323.75642 * 19 18 16 21 21 C 1.36934 * 125.66293 * 200.99351 * 20 19 18 22 22 H 1.08000 * 120.00166 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00294 * 0.02795 * 21 20 19 24 24 N 1.31618 * 119.99691 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00096 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46773 * 90.00030 * 25 23 21 27 27 H 1.48500 * 109.47090 * 209.99757 * 25 23 21 28 28 H 1.48496 * 109.47105 * 330.00005 * 25 23 21 29 29 C 1.48534 * 108.53840 * 20.97479 * 20 19 18 30 30 H 1.09002 * 108.75674 * 121.11954 * 29 20 19 31 31 C 1.43782 * 117.18382 * 355.47717 * 13 11 2 32 32 H 1.09001 * 109.46955 * 54.48038 * 1 2 3 33 33 H 1.09001 * 109.47512 * 174.47750 * 1 2 3 34 34 H 1.08997 * 109.47430 * 294.47962 * 1 2 3 35 35 H 1.08001 * 120.03050 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.97019 * 180.27146 * 7 6 5 37 37 H 1.08007 * 119.94271 * 179.70789 * 8 7 6 38 38 H 1.08008 * 119.97263 * 180.02562 * 9 8 7 39 39 H 1.07998 * 120.03068 * 180.02562 * 10 9 8 40 40 H 1.09009 * 109.02941 * 93.16897 * 14 13 11 41 41 H 1.09001 * 108.97449 * 334.27558 * 14 13 11 42 42 H 1.09008 * 108.55605 * 195.98906 * 15 14 13 43 43 H 1.08999 * 108.44238 * 78.28965 * 15 14 13 44 44 H 1.09007 * 111.20110 * 48.49429 * 18 16 15 45 45 H 1.09000 * 111.24314 * 284.15852 * 18 16 15 46 46 H 1.09002 * 110.32504 * 82.69843 * 19 18 16 47 47 H 1.08996 * 110.32575 * 204.81298 * 19 18 16 48 48 H 0.96999 * 119.99757 * 180.02562 * 24 23 21 49 49 H 1.08995 * 108.05779 * 279.09484 * 31 13 11 50 50 H 1.09002 * 108.06140 * 35.62439 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1103 0.0621 2.3048 6 6 1.6596 1.3740 2.3275 7 6 1.7609 2.1178 3.4873 8 6 2.3221 1.5598 4.6210 9 6 2.7772 0.2544 4.5992 10 6 2.6726 -0.4956 3.4438 11 6 2.0324 -0.7105 -1.2304 12 8 2.5557 -1.8000 -1.1303 13 7 1.9001 -0.1351 -2.4420 14 6 2.4924 -0.8236 -3.5692 15 6 3.0145 0.1479 -4.6077 16 6 2.0975 1.2947 -4.8857 17 1 2.6636 2.0449 -5.4377 18 6 0.8849 0.8995 -5.7582 19 6 -0.0216 2.1450 -5.5656 20 7 0.1844 2.5586 -4.1651 21 6 -0.6719 3.3308 -3.4265 22 1 -0.4289 3.5800 -2.4042 23 6 -1.8524 3.7933 -3.9918 24 7 -2.1484 3.4900 -5.2379 25 14 -3.0209 4.8461 -2.9840 26 1 -2.6688 6.2786 -3.1549 27 1 -4.4141 4.6203 -3.4458 28 1 -2.9086 4.4764 -1.5502 29 6 1.4752 1.9966 -3.6917 30 1 2.1211 2.8171 -3.3791 31 6 1.1827 1.1094 -2.5034 32 1 -0.3633 0.5971 -0.8364 33 1 -0.3634 -1.0229 -0.0989 34 1 -0.3634 0.4258 0.9352 35 1 1.2259 1.8119 1.4407 36 1 1.4061 3.1377 3.5069 37 1 2.4047 2.1445 5.5254 38 1 3.2148 -0.1794 5.4862 39 1 3.0278 -1.5154 3.4273 40 1 1.7405 -1.4652 -4.0288 41 1 3.3172 -1.4412 -3.2137 42 1 3.1823 -0.3956 -5.5376 43 1 3.9692 0.5432 -4.2609 44 1 0.4029 -0.0014 -5.3784 45 1 1.1725 0.7790 -6.8027 46 1 0.2814 2.9424 -6.2443 47 1 -1.0661 1.8826 -5.7331 48 1 -2.9730 3.8134 -5.6330 49 1 0.1161 0.8849 -2.5032 50 1 1.4067 1.6736 -1.5981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085086864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:29 Heat of formation + Delta-G solvation = -1.796394 kcal Electronic energy + Delta-G solvation = -31432.263994 eV Core-core repulsion = 27426.076706 eV Total energy + Delta-G solvation = -4006.187288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98743 -39.92258 -38.42108 -37.29308 -35.28599 -33.82509 -32.32761 -31.44189 -30.80226 -29.71758 -29.33584 -28.52094 -25.50742 -24.49467 -23.89893 -23.06603 -22.63474 -21.84979 -20.45763 -19.75032 -18.56416 -17.74054 -17.07004 -16.84396 -16.43235 -15.90611 -15.85994 -15.20642 -15.08917 -14.92531 -14.72347 -14.47988 -14.13205 -13.94421 -13.56750 -13.55190 -13.15566 -13.05628 -12.68687 -12.56093 -12.40306 -12.16691 -11.91520 -11.80731 -11.70194 -11.49368 -11.28198 -11.16943 -11.07392 -10.95892 -10.84599 -10.80457 -10.21559 -10.03349 -9.98536 -9.86664 -9.60073 -9.48492 -9.13122 -8.76912 -8.32656 -8.29268 -7.02693 -5.78949 -3.20863 1.20181 1.31881 2.56664 2.66800 3.31004 3.35773 3.38679 3.55848 3.66614 4.31945 4.42809 4.61505 4.75647 4.79309 4.86960 4.95691 5.01180 5.02314 5.11074 5.21403 5.24085 5.30000 5.38289 5.47771 5.50466 5.60028 5.64258 5.67058 5.68069 5.74272 5.87598 5.92115 6.03083 6.09061 6.15023 6.19284 6.20253 6.28058 6.32262 6.39612 6.48714 6.51607 6.62364 6.70899 6.80488 6.89050 7.27353 7.41043 7.49048 7.50917 7.74109 8.19012 8.24748 9.07025 9.67231 10.32503 11.25713 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.003815 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.576156 B = 7336.934723 C = 9614.055485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.068 3.932 3 H 0.099 0.901 4 O -0.287 6.287 5 C 0.134 3.866 6 C -0.211 4.211 7 C -0.078 4.078 8 C -0.163 4.163 9 C -0.083 4.083 10 C -0.153 4.153 11 C 0.512 3.488 12 O -0.529 6.529 13 N -0.582 5.582 14 C 0.121 3.879 15 C -0.111 4.111 16 C -0.092 4.092 17 H 0.066 0.934 18 C -0.141 4.141 19 C 0.157 3.843 20 N -0.597 5.597 21 C -0.231 4.231 22 H 0.078 0.922 23 C -0.004 4.004 24 N -0.917 5.917 25 Si 0.911 3.089 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.162 3.838 30 H 0.042 0.958 31 C 0.091 3.909 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.097 0.903 48 H 0.253 0.747 49 H 0.082 0.918 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 -5.288 10.741 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.009 3.991 3 H 0.116 0.884 4 O -0.200 6.200 5 C 0.088 3.912 6 C -0.230 4.230 7 C -0.096 4.096 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.171 4.171 11 C 0.298 3.702 12 O -0.406 6.406 13 N -0.316 5.316 14 C -0.001 4.001 15 C -0.150 4.150 16 C -0.112 4.112 17 H 0.084 0.916 18 C -0.180 4.180 19 C 0.033 3.967 20 N -0.323 5.323 21 C -0.359 4.359 22 H 0.095 0.905 23 C -0.200 4.200 24 N -0.564 5.564 25 Si 0.741 3.259 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.054 3.946 30 H 0.059 0.941 31 C -0.034 4.034 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.100 0.900 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.093 -5.905 10.651 15.199 hybrid contribution -0.763 1.070 0.383 1.369 sum 8.331 -4.835 11.033 14.646 Atomic orbital electron populations 1.22479 0.92133 1.04659 1.04901 1.22269 0.96313 0.96768 0.83760 0.88378 1.86181 1.80814 1.37204 1.15793 1.19113 0.94984 0.90334 0.86784 1.21411 1.06774 0.94371 1.00427 1.20986 0.96907 0.99529 0.92206 1.21057 1.02429 0.95920 0.98737 1.20951 0.98059 0.94037 0.97009 1.20459 1.03955 1.01421 0.91313 1.20108 0.79597 0.86188 0.84351 1.90683 1.43650 1.20083 1.86149 1.46689 1.54881 1.23419 1.06580 1.20707 0.98443 0.94527 0.86437 1.20646 0.98908 0.96630 0.98794 1.20621 0.96631 0.96760 0.97158 0.91571 1.23048 0.96537 1.00645 0.97734 1.21860 0.99820 0.90441 0.84625 1.45057 1.17917 1.58967 1.10317 1.18992 0.98301 1.23623 0.95004 0.90465 1.24781 0.98222 1.00665 0.96374 1.69860 1.25299 1.48942 1.12317 0.86141 0.80451 0.80195 0.79094 1.21546 1.21595 1.20598 1.20302 0.89648 0.93266 0.91357 0.94053 1.21830 0.97130 0.83598 1.00807 0.88573 0.90893 0.90669 0.85021 0.85681 0.86032 0.85487 0.85176 0.92213 0.89753 0.90441 0.92163 0.92223 0.92134 0.96604 0.88482 0.93601 0.90018 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.84 37.15 0.33 -2.15 16 2 C 0.07 0.99 1.80 -27.89 -0.05 0.94 16 3 H 0.10 1.29 4.88 -51.93 -0.25 1.04 16 4 O -0.29 -4.46 9.36 -39.09 -0.37 -4.82 16 5 C 0.13 1.81 6.58 -39.22 -0.26 1.55 16 6 C -0.21 -2.57 8.22 -39.43 -0.32 -2.89 16 7 C -0.08 -0.83 10.04 -39.60 -0.40 -1.22 16 8 C -0.16 -1.58 10.04 -39.56 -0.40 -1.98 16 9 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 10 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 11 C 0.51 8.48 6.94 -10.99 -0.08 8.41 16 12 O -0.53 -10.28 15.78 -14.11 -0.22 -10.50 16 13 N -0.58 -9.13 3.12 -179.23 -0.56 -9.69 16 14 C 0.12 1.74 6.08 -5.74 -0.03 1.70 16 15 C -0.11 -1.45 5.44 -29.25 -0.16 -1.61 16 16 C -0.09 -1.47 2.44 -92.17 -0.23 -1.70 16 17 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 18 C -0.14 -2.45 6.54 -24.74 -0.16 -2.61 16 19 C 0.16 3.52 5.76 -2.32 -0.01 3.51 16 20 N -0.60 -13.61 2.96 -163.66 -0.48 -14.09 16 21 C -0.23 -5.78 9.66 -15.06 -0.15 -5.92 16 22 H 0.08 1.83 7.83 -52.49 -0.41 1.42 16 23 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 24 N -0.92 -25.16 10.15 55.49 0.56 -24.60 16 25 Si 0.91 20.69 29.55 -169.99 -5.02 15.67 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 C 0.16 2.97 3.43 -68.33 -0.23 2.74 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 31 C 0.09 1.51 4.28 -6.41 -0.03 1.48 16 32 H 0.10 1.35 5.28 -51.93 -0.27 1.08 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.92 6.99 -51.93 -0.36 0.55 16 35 H 0.13 1.52 5.51 -52.49 -0.29 1.23 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 39 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.08 1.21 7.06 -51.93 -0.37 0.85 16 42 H 0.08 0.87 8.09 -51.92 -0.42 0.45 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.10 2.48 6.09 -51.93 -0.32 2.17 16 48 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.08 1.52 5.95 -51.93 -0.31 1.21 16 50 H 0.06 0.88 5.74 -51.93 -0.30 0.58 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -29.95 382.88 -10.89 -40.84 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.51 Total: 4.81 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.06 Total: -3.38 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.48 Total: -48.39 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.59 Total: -15.32 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.95 -10.89 -40.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085086864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.048 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds