Wall clock time and date at job start Wed Apr 1 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47307 * 2 1 4 4 O 1.42907 * 109.47007 * 119.99470 * 2 1 3 5 5 C 1.35899 * 117.00358 * 275.10715 * 4 2 1 6 6 C 1.38728 * 120.05121 * 5.25402 * 5 4 2 7 7 C 1.38153 * 119.93854 * 179.70367 * 6 5 4 8 8 C 1.38262 * 120.05363 * 0.59279 * 7 6 5 9 9 C 1.38260 * 120.11353 * 359.67784 * 8 7 6 10 10 C 1.38145 * 120.05790 * 0.02744 * 9 8 7 11 11 C 1.50702 * 109.47450 * 239.99634 * 2 1 3 12 12 O 1.21281 * 119.99845 * 251.07727 * 11 2 1 13 13 N 1.34774 * 119.99942 * 71.07600 * 11 2 1 14 14 C 1.44749 * 117.18494 * 175.49122 * 13 11 2 15 15 C 1.51485 * 111.70796 * 213.73926 * 14 13 11 16 16 C 1.49438 * 114.09054 * 317.18187 * 15 14 13 17 17 H 1.09000 * 107.68260 * 165.91077 * 16 15 14 18 18 C 1.54526 * 112.97325 * 284.23166 * 16 15 14 19 19 C 1.55248 * 100.54566 * 166.31562 * 18 16 15 20 20 N 1.47476 * 105.14364 * 323.75642 * 19 18 16 21 21 C 1.36934 * 125.66293 * 200.99351 * 20 19 18 22 22 H 1.08000 * 120.00166 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00294 * 0.02795 * 21 20 19 24 24 N 1.31618 * 119.99691 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00096 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46773 * 90.00030 * 25 23 21 27 27 H 1.48500 * 109.47090 * 209.99757 * 25 23 21 28 28 H 1.48496 * 109.47105 * 330.00005 * 25 23 21 29 29 C 1.48534 * 108.53840 * 20.97479 * 20 19 18 30 30 H 1.09002 * 108.75674 * 121.11954 * 29 20 19 31 31 C 1.43782 * 117.18382 * 355.47717 * 13 11 2 32 32 H 1.09001 * 109.46955 * 54.48038 * 1 2 3 33 33 H 1.09001 * 109.47512 * 174.47750 * 1 2 3 34 34 H 1.08997 * 109.47430 * 294.47962 * 1 2 3 35 35 H 1.08001 * 120.03050 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.97019 * 180.27146 * 7 6 5 37 37 H 1.08007 * 119.94271 * 179.70789 * 8 7 6 38 38 H 1.08008 * 119.97263 * 180.02562 * 9 8 7 39 39 H 1.07998 * 120.03068 * 180.02562 * 10 9 8 40 40 H 1.09009 * 109.02941 * 93.16897 * 14 13 11 41 41 H 1.09001 * 108.97449 * 334.27558 * 14 13 11 42 42 H 1.09008 * 108.55605 * 195.98906 * 15 14 13 43 43 H 1.08999 * 108.44238 * 78.28965 * 15 14 13 44 44 H 1.09007 * 111.20110 * 48.49429 * 18 16 15 45 45 H 1.09000 * 111.24314 * 284.15852 * 18 16 15 46 46 H 1.09002 * 110.32504 * 82.69843 * 19 18 16 47 47 H 1.08996 * 110.32575 * 204.81298 * 19 18 16 48 48 H 0.96999 * 119.99757 * 180.02562 * 24 23 21 49 49 H 1.08995 * 108.05779 * 279.09484 * 31 13 11 50 50 H 1.09002 * 108.06140 * 35.62439 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.1103 0.0621 2.3048 6 6 1.6596 1.3740 2.3275 7 6 1.7609 2.1178 3.4873 8 6 2.3221 1.5598 4.6210 9 6 2.7772 0.2544 4.5992 10 6 2.6726 -0.4956 3.4438 11 6 2.0324 -0.7105 -1.2304 12 8 2.5557 -1.8000 -1.1303 13 7 1.9001 -0.1351 -2.4420 14 6 2.4924 -0.8236 -3.5692 15 6 3.0145 0.1479 -4.6077 16 6 2.0975 1.2947 -4.8857 17 1 2.6636 2.0449 -5.4377 18 6 0.8849 0.8995 -5.7582 19 6 -0.0216 2.1450 -5.5656 20 7 0.1844 2.5586 -4.1651 21 6 -0.6719 3.3308 -3.4265 22 1 -0.4289 3.5800 -2.4042 23 6 -1.8524 3.7933 -3.9918 24 7 -2.1484 3.4900 -5.2379 25 14 -3.0209 4.8461 -2.9840 26 1 -2.6688 6.2786 -3.1549 27 1 -4.4141 4.6203 -3.4458 28 1 -2.9086 4.4764 -1.5502 29 6 1.4752 1.9966 -3.6917 30 1 2.1211 2.8171 -3.3791 31 6 1.1827 1.1094 -2.5034 32 1 -0.3633 0.5971 -0.8364 33 1 -0.3634 -1.0229 -0.0989 34 1 -0.3634 0.4258 0.9352 35 1 1.2259 1.8119 1.4407 36 1 1.4061 3.1377 3.5069 37 1 2.4047 2.1445 5.5254 38 1 3.2148 -0.1794 5.4862 39 1 3.0278 -1.5154 3.4273 40 1 1.7405 -1.4652 -4.0288 41 1 3.3172 -1.4412 -3.2137 42 1 3.1823 -0.3956 -5.5376 43 1 3.9692 0.5432 -4.2609 44 1 0.4029 -0.0014 -5.3784 45 1 1.1725 0.7790 -6.8027 46 1 0.2814 2.9424 -6.2443 47 1 -1.0661 1.8826 -5.7331 48 1 -2.9730 3.8134 -5.6330 49 1 0.1161 0.8849 -2.5032 50 1 1.4067 1.6736 -1.5981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085086864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:28 Heat of formation + Delta-G solvation = -16.602900 kcal Electronic energy + Delta-G solvation = -31432.906052 eV Core-core repulsion = 27426.076706 eV Total energy + Delta-G solvation = -4006.829346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.20055 -41.01234 -39.76987 -38.30494 -36.76918 -35.24207 -33.81677 -32.71097 -31.72060 -30.84786 -30.62838 -30.09434 -26.88954 -26.08048 -25.16478 -24.20850 -23.59909 -22.89994 -22.11556 -21.03177 -19.58988 -19.06411 -18.76142 -18.07378 -17.59743 -17.12044 -16.84327 -16.74795 -16.34671 -16.25257 -16.06928 -15.61146 -15.44442 -15.14408 -14.84846 -14.46593 -14.45496 -14.23108 -14.13420 -13.67624 -13.56672 -13.51179 -13.38544 -13.10792 -12.96079 -12.79042 -12.66147 -12.55389 -12.46821 -12.35864 -12.12713 -11.97824 -11.76066 -11.60516 -11.46569 -11.33577 -11.11669 -10.83630 -10.69228 -9.95720 -9.63637 -9.20976 -8.90941 -7.74796 -5.17383 0.38029 0.46320 1.31233 1.48601 1.50142 1.50865 1.58443 2.39140 2.52206 2.83519 3.17388 3.36873 3.49622 3.62103 3.69691 3.76081 3.82620 3.91832 3.97993 4.01945 4.09840 4.23667 4.27715 4.34801 4.38249 4.43126 4.49824 4.53418 4.57807 4.67297 4.70964 4.73684 4.85595 4.88314 4.96895 5.05967 5.07887 5.08468 5.14801 5.34985 5.35171 5.47189 5.47975 5.51474 5.59725 5.60609 5.71248 5.82358 5.85351 6.13715 6.30514 6.37158 6.94587 7.12645 7.79279 8.44065 9.28582 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009844 B = 0.003815 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.576156 B = 7336.934723 C = 9614.055485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.111 0.889 4 O -0.310 6.310 5 C 0.105 3.895 6 C -0.222 4.222 7 C -0.085 4.085 8 C -0.159 4.159 9 C -0.080 4.080 10 C -0.168 4.168 11 C 0.510 3.490 12 O -0.561 6.561 13 N -0.579 5.579 14 C 0.116 3.884 15 C -0.102 4.102 16 C -0.084 4.084 17 H 0.071 0.929 18 C -0.125 4.125 19 C 0.159 3.841 20 N -0.614 5.614 21 C -0.228 4.228 22 H 0.089 0.911 23 C -0.063 4.063 24 N -0.949 5.949 25 Si 0.968 3.032 26 H -0.291 1.291 27 H -0.301 1.301 28 H -0.264 1.264 29 C 0.157 3.843 30 H 0.044 0.956 31 C 0.105 3.895 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.131 0.869 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.085 0.915 46 H -0.012 1.012 47 H 0.060 0.940 48 H 0.244 0.756 49 H 0.061 0.939 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 -5.049 12.723 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.013 3.987 3 H 0.129 0.871 4 O -0.223 6.223 5 C 0.060 3.940 6 C -0.240 4.240 7 C -0.103 4.103 8 C -0.177 4.177 9 C -0.097 4.097 10 C -0.187 4.187 11 C 0.297 3.703 12 O -0.439 6.439 13 N -0.311 5.311 14 C -0.006 4.006 15 C -0.140 4.140 16 C -0.103 4.103 17 H 0.090 0.910 18 C -0.164 4.164 19 C 0.034 3.966 20 N -0.340 5.340 21 C -0.357 4.357 22 H 0.107 0.893 23 C -0.255 4.255 24 N -0.598 5.598 25 Si 0.797 3.203 26 H -0.218 1.218 27 H -0.228 1.228 28 H -0.188 1.188 29 C 0.051 3.949 30 H 0.061 0.939 31 C -0.019 4.019 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.150 0.850 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.149 0.851 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.006 0.994 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.079 0.921 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.720 -5.670 12.656 17.528 hybrid contribution -1.202 1.002 -0.154 1.572 sum 9.518 -4.668 12.502 16.391 Atomic orbital electron populations 1.22396 0.91621 1.04086 1.05221 1.22219 0.96545 0.96893 0.82999 0.87148 1.86141 1.81458 1.38227 1.16493 1.19403 0.96850 0.91145 0.86619 1.21513 1.07150 0.94084 1.01288 1.21314 0.96664 1.00385 0.91917 1.21463 1.00863 0.95972 0.99425 1.21323 0.97222 0.94071 0.97131 1.20707 1.04270 1.01939 0.91758 1.20478 0.78947 0.85838 0.85054 1.90661 1.45205 1.21455 1.86618 1.46707 1.54453 1.22975 1.06967 1.20865 0.98498 0.94927 0.86316 1.20606 0.98376 0.95339 0.99685 1.20608 0.96261 0.97871 0.95554 0.91038 1.22891 0.95952 0.97834 0.99684 1.21623 0.98879 0.91796 0.84317 1.45292 1.19311 1.58915 1.10444 1.19401 0.98266 1.22506 0.95531 0.89339 1.25516 1.00062 1.02610 0.97353 1.70105 1.25331 1.50545 1.13845 0.85222 0.77939 0.78421 0.78677 1.21834 1.22770 1.18801 1.20505 0.87793 0.93740 0.92902 0.93863 1.21492 0.95971 0.83833 1.00638 0.89250 0.91704 0.89397 0.84973 0.83714 0.83146 0.82587 0.85134 0.92294 0.89489 0.87634 0.90582 0.92350 0.89642 0.99359 0.92157 0.94639 0.92095 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 8.84 71.98 0.64 -4.06 16 2 C 0.07 2.08 1.80 29.85 0.05 2.13 16 3 H 0.11 2.81 4.88 -2.39 -0.01 2.80 16 4 O -0.31 -9.62 9.36 -73.62 -0.69 -10.31 16 5 C 0.10 2.77 6.58 22.50 0.15 2.92 16 6 C -0.22 -5.11 8.22 22.37 0.18 -4.92 16 7 C -0.08 -1.59 10.04 22.26 0.22 -1.36 16 8 C -0.16 -2.57 10.04 22.28 0.22 -2.35 16 9 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 10 C -0.17 -3.84 9.99 22.37 0.22 -3.61 16 11 C 0.51 16.65 6.94 87.66 0.61 17.26 16 12 O -0.56 -21.71 15.78 15.77 0.25 -21.46 16 13 N -0.58 -17.50 3.12 -839.34 -2.62 -20.12 16 14 C 0.12 3.10 6.08 86.21 0.52 3.62 16 15 C -0.10 -2.34 5.44 28.96 0.16 -2.18 16 16 C -0.08 -2.49 2.44 -11.79 -0.03 -2.52 16 17 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 18 C -0.13 -4.20 6.54 31.88 0.21 -3.99 16 19 C 0.16 7.28 5.76 86.96 0.50 7.78 16 20 N -0.61 -28.15 2.96 -671.69 -1.99 -30.13 16 21 C -0.23 -11.45 9.66 84.03 0.81 -10.64 16 22 H 0.09 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 24 N -0.95 -54.04 10.15 21.65 0.22 -53.82 16 25 Si 0.97 43.00 29.55 68.60 2.03 45.03 16 26 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 29 C 0.16 5.58 3.43 43.62 0.15 5.73 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 C 0.11 3.39 4.28 86.28 0.37 3.76 16 32 H 0.09 2.50 5.28 -2.39 -0.01 2.48 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 2.09 6.99 -2.39 -0.02 2.07 16 35 H 0.13 2.90 5.51 -2.91 -0.02 2.88 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 37 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.09 2.34 7.06 -2.39 -0.02 2.33 16 42 H 0.11 1.92 8.09 -2.38 -0.02 1.90 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.98 8.09 -2.38 -0.02 1.96 16 45 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 46 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 47 H 0.06 3.22 6.09 -2.39 -0.01 3.21 16 48 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 49 H 0.06 2.26 5.95 -2.39 -0.01 2.25 16 50 H 0.07 2.12 5.74 -2.39 -0.01 2.11 16 Total: -1.00 -67.04 382.88 3.83 -63.21 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.94 Total: 24.01 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 5.68 Total: 3.59 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.39 Total: -104.07 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.44 Total: -31.77 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -67.04 3.83 -63.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085086864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.606 kcal (2) G-P(sol) polarization free energy of solvation -67.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds