Wall clock time and date at job start Wed Apr 1 2020 03:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46987 * 2 1 4 4 O 1.42902 * 109.46552 * 240.00352 * 2 1 3 5 5 C 1.42901 * 113.99992 * 90.00158 * 4 2 1 6 6 C 1.50701 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.38235 * 120.00145 * 269.72562 * 6 5 4 8 8 C 1.38234 * 120.00000 * 179.74490 * 7 6 5 9 9 C 1.38239 * 119.99724 * 0.54912 * 8 7 6 10 10 C 1.38233 * 120.00171 * 359.70149 * 9 8 7 11 11 C 1.38235 * 119.99726 * 89.99726 * 6 5 4 12 12 C 1.50698 * 109.47234 * 120.00736 * 2 1 3 13 13 O 1.21283 * 120.00472 * 114.99939 * 12 2 1 14 14 N 1.34777 * 119.99538 * 294.99276 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 H 1.08997 * 110.56159 * 34.57939 * 15 14 12 17 17 C 1.54856 * 110.62840 * 271.67421 * 15 14 12 18 18 C 1.55835 * 103.45071 * 241.51146 * 17 15 14 19 19 H 1.09001 * 115.56506 * 159.56149 * 18 17 15 20 20 C 1.55850 * 105.06473 * 288.17751 * 18 17 15 21 21 C 1.54853 * 103.44817 * 71.82111 * 20 18 17 22 22 C 1.55771 * 103.59270 * 359.94272 * 21 20 18 23 23 H 1.08997 * 115.64832 * 159.69118 * 22 21 20 24 24 N 1.50247 * 101.04961 * 32.93638 * 18 17 15 25 25 C 1.36933 * 130.83660 * 126.04645 * 24 18 17 26 26 H 1.07994 * 119.99891 * 180.02562 * 25 24 18 27 27 C 1.38811 * 120.00145 * 0.02901 * 25 24 18 28 28 N 1.31614 * 120.00043 * 359.97438 * 27 25 24 29 29 Si 1.86807 * 120.00025 * 179.97438 * 27 25 24 30 30 H 1.48495 * 109.46779 * 0.02562 * 29 27 25 31 31 H 1.48499 * 109.46771 * 119.99980 * 29 27 25 32 32 H 1.48493 * 109.47059 * 239.99939 * 29 27 25 33 33 H 1.08995 * 109.47503 * 59.99264 * 1 2 3 34 34 H 1.09001 * 109.47321 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.46748 * 299.99453 * 1 2 3 36 36 H 1.09002 * 109.46729 * 299.99648 * 5 4 2 37 37 H 1.08994 * 109.47057 * 59.99682 * 5 4 2 38 38 H 1.08001 * 119.99811 * 359.97438 * 7 6 5 39 39 H 1.07996 * 120.00100 * 180.27621 * 8 7 6 40 40 H 1.08002 * 119.99341 * 179.72773 * 9 8 7 41 41 H 1.07996 * 119.99657 * 179.97438 * 10 9 8 42 42 H 1.07995 * 120.00563 * 0.02562 * 11 6 5 43 43 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 44 44 H 1.09006 * 110.62680 * 0.02562 * 17 15 14 45 45 H 1.09000 * 110.62402 * 123.01837 * 17 15 14 46 46 H 1.09003 * 110.62395 * 190.31114 * 20 18 17 47 47 H 1.08994 * 110.62464 * 313.17388 * 20 18 17 48 48 H 1.09002 * 110.62698 * 118.48566 * 21 20 18 49 49 H 1.08998 * 110.62915 * 241.35432 * 21 20 18 50 50 H 0.97009 * 120.00144 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7012 -0.6280 -3.4612 7 6 4.0597 -0.7955 -3.6539 8 6 4.5194 -1.5439 -4.7214 9 6 3.6206 -2.1154 -5.6027 10 6 2.2622 -1.9436 -5.4129 11 6 1.8024 -1.1999 -4.3422 12 6 2.0324 -0.7106 1.2303 13 8 2.6530 -1.7468 1.1213 14 7 1.7920 -0.1943 2.4519 15 6 2.2752 -0.8882 3.6483 16 1 3.2307 -1.3735 3.4497 17 6 1.2306 -1.9205 4.1395 18 6 0.8634 -1.4136 5.5666 19 1 -0.0865 -1.7721 5.9632 20 6 2.1163 -1.7218 6.4408 21 6 3.1609 -0.6895 5.9497 22 6 2.4010 0.1028 4.8445 23 1 2.8097 1.0836 4.6017 24 7 0.9958 0.0723 5.3874 25 6 0.1118 1.0870 5.6403 26 1 0.3939 2.1106 5.4428 27 6 -1.1469 0.8000 6.1504 28 7 -1.4908 -0.4475 6.3906 29 14 -2.3526 2.1843 6.4960 30 1 -1.7281 3.4843 6.1424 31 1 -3.5790 1.9872 5.6822 32 1 -2.7093 2.1817 7.9375 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 -0.3633 0.5138 0.8900 36 1 1.2536 0.6548 -2.5588 37 1 2.9318 0.9514 -2.0451 38 1 4.7620 -0.3447 -2.9683 39 1 5.5806 -1.6784 -4.8694 40 1 3.9799 -2.6964 -6.4392 41 1 1.5601 -2.3898 -6.1017 42 1 0.7412 -1.0651 -4.1944 43 1 1.2954 0.6343 2.5392 44 1 0.3532 -1.9165 3.4927 45 1 1.6690 -2.9173 4.1870 46 1 1.8941 -1.5704 7.4971 47 1 2.4662 -2.7390 6.2651 48 1 3.4567 -0.0261 6.7624 49 1 4.0317 -1.1938 5.5309 50 1 -2.3703 -0.6481 6.7474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110800953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:20 Heat of formation + Delta-G solvation = -11.430906 kcal Electronic energy + Delta-G solvation = -30156.928451 eV Core-core repulsion = 26150.323380 eV Total energy + Delta-G solvation = -4006.605072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.01477 -39.49633 -38.65435 -37.22002 -33.81807 -32.72956 -32.43976 -31.10949 -30.84456 -29.11351 -28.78872 -27.64299 -26.35660 -24.38631 -23.88605 -22.78754 -21.54352 -21.36350 -19.86201 -19.69961 -18.67848 -17.44936 -17.05831 -16.93442 -16.65429 -15.88230 -15.48015 -15.38466 -14.91997 -14.84201 -14.38565 -14.08242 -13.80078 -13.62953 -13.58365 -13.24952 -13.14247 -12.86525 -12.58653 -12.37070 -12.16739 -12.04073 -11.84040 -11.49815 -11.26627 -11.19979 -11.12508 -11.06390 -10.95126 -10.93502 -10.51072 -10.36944 -10.09872 -9.95942 -9.92620 -9.51863 -9.21934 -9.12882 -9.11431 -9.01488 -8.94837 -8.44091 -6.97093 -5.77014 -3.15998 1.04655 1.20398 2.95441 3.08761 3.33399 3.38462 3.41681 3.62248 4.11603 4.37511 4.58714 4.62280 4.78534 4.83776 4.91710 4.97835 5.03035 5.10374 5.11547 5.13588 5.31954 5.33730 5.43397 5.61713 5.63962 5.67694 5.70354 5.74894 5.82797 5.86699 6.05214 6.11323 6.12687 6.15006 6.22853 6.28700 6.31048 6.39046 6.42094 6.49450 6.59730 6.74635 6.76787 6.83177 6.92521 6.99639 7.14481 7.33291 7.44895 7.77545 8.00536 8.13451 8.64773 9.04596 9.67601 10.49214 11.32106 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.002372 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.899761 B =11803.309353 C =12828.945704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.083 0.917 4 O -0.349 6.349 5 C 0.099 3.901 6 C -0.087 4.087 7 C -0.096 4.096 8 C -0.124 4.124 9 C -0.116 4.116 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.511 3.489 13 O -0.531 6.531 14 N -0.704 5.704 15 C 0.131 3.869 16 H 0.078 0.922 17 C -0.143 4.143 18 C 0.157 3.843 19 H 0.151 0.849 20 C -0.139 4.139 21 C -0.127 4.127 22 C 0.125 3.875 23 H 0.088 0.912 24 N -0.591 5.591 25 C -0.214 4.214 26 H 0.078 0.922 27 C -0.010 4.010 28 N -0.918 5.918 29 Si 0.914 3.086 30 H -0.281 1.281 31 H -0.291 1.291 32 H -0.291 1.291 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.402 0.598 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 1.209 -18.566 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.101 0.899 4 O -0.267 6.267 5 C 0.022 3.978 6 C -0.087 4.087 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.295 3.705 13 O -0.407 6.407 14 N -0.355 5.355 15 C 0.025 3.975 16 H 0.096 0.904 17 C -0.183 4.183 18 C 0.050 3.950 19 H 0.168 0.832 20 C -0.179 4.179 21 C -0.167 4.167 22 C 0.017 3.983 23 H 0.106 0.894 24 N -0.312 5.312 25 C -0.342 4.342 26 H 0.096 0.904 27 C -0.206 4.206 28 N -0.566 5.566 29 Si 0.745 3.255 30 H -0.206 1.206 31 H -0.219 1.219 32 H -0.218 1.218 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.236 0.764 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.250 0.403 -18.540 20.297 hybrid contribution -0.921 1.317 0.243 1.625 sum 7.329 1.720 -18.297 19.785 Atomic orbital electron populations 1.22226 0.93394 1.03988 1.03184 1.21940 0.95253 0.96129 0.85751 0.89938 1.88142 1.86548 1.33611 1.18445 1.21414 0.99631 0.91753 0.84961 1.19579 0.93690 0.99856 0.95548 1.21099 0.94953 0.98075 0.97274 1.21151 0.99789 0.98070 0.95217 1.21194 0.93469 0.99460 0.99317 1.21142 0.95768 0.99272 0.98129 1.21080 0.99546 0.96568 0.94387 1.20227 0.80220 0.85727 0.84342 1.90685 1.40273 1.23218 1.86564 1.45945 1.56896 1.27631 1.05022 1.22620 0.96820 0.94308 0.83757 0.90399 1.23461 0.97798 0.96469 1.00614 1.23685 0.97899 0.83131 0.90276 0.83194 1.23069 0.97852 0.96425 1.00537 1.22853 0.97024 0.98245 0.98609 1.23216 0.88158 0.95412 0.91541 0.89372 1.46624 1.09077 1.02548 1.72924 1.19034 0.92698 0.86610 1.35849 0.90381 1.24704 0.97581 0.96423 1.01912 1.69502 1.20494 1.16203 1.50404 0.86012 0.81070 0.80772 0.77669 1.20635 1.21858 1.21836 0.91612 0.91077 0.90308 0.92255 0.92351 0.85875 0.85922 0.86087 0.85947 0.85893 0.76374 0.92203 0.92839 0.92641 0.93306 0.92449 0.93008 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.48 37.16 0.35 -1.72 16 2 C 0.07 0.95 3.13 -27.88 -0.09 0.86 16 3 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 4 O -0.35 -5.12 9.51 -55.09 -0.52 -5.64 16 5 C 0.10 1.07 5.87 36.01 0.21 1.28 16 6 C -0.09 -0.97 5.51 -104.62 -0.58 -1.54 16 7 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 8 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 9 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 10 C -0.13 -1.14 10.05 -39.58 -0.40 -1.53 16 11 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 12 C 0.51 8.84 7.18 -10.99 -0.08 8.76 16 13 O -0.53 -11.35 16.19 -14.30 -0.23 -11.58 16 14 N -0.70 -11.93 5.05 -51.40 -0.26 -12.19 16 15 C 0.13 2.44 2.75 -65.43 -0.18 2.26 16 16 H 0.08 1.48 7.31 -51.93 -0.38 1.10 16 17 C -0.14 -2.94 6.23 -24.24 -0.15 -3.09 16 18 C 0.16 3.53 4.69 -62.80 -0.29 3.24 16 19 H 0.15 3.89 5.57 -51.93 -0.29 3.60 16 20 C -0.14 -2.74 6.44 -24.23 -0.16 -2.90 16 21 C -0.13 -2.29 6.43 -24.28 -0.16 -2.45 16 22 C 0.13 2.38 5.08 -62.59 -0.32 2.07 16 23 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 24 N -0.59 -13.66 2.99 -145.52 -0.44 -14.10 16 25 C -0.21 -5.44 10.59 -15.06 -0.16 -5.60 16 26 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 27 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 28 N -0.92 -25.37 10.48 55.49 0.58 -24.79 16 29 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 32 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 33 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.96 7.92 -51.93 -0.41 0.54 16 36 H 0.06 0.53 7.81 -51.93 -0.41 0.12 16 37 H 0.06 0.54 8.03 -51.93 -0.42 0.13 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.40 6.39 8.42 -40.82 -0.34 6.05 16 44 H 0.06 1.33 7.98 -51.93 -0.41 0.91 16 45 H 0.05 1.04 7.82 -51.93 -0.41 0.64 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.05 0.83 7.83 -51.93 -0.41 0.42 16 50 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 404.67 15.07 6.10 6.10 Total: -1.00 -31.59 404.67 -11.49 -43.08 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.04 Total: 9.65 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.65 Total: -6.49 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.11 Total: -51.08 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.76 Total: -17.22 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.59 -11.49 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110800953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.649 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds