Wall clock time and date at job start Wed Apr 1 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47361 * 2 1 4 4 O 1.42905 * 109.46833 * 239.99784 * 2 1 3 5 5 C 1.35904 * 116.99844 * 84.91949 * 4 2 1 6 6 C 1.38728 * 120.05504 * 174.25304 * 5 4 2 7 7 C 1.38141 * 119.94630 * 179.74250 * 6 5 4 8 8 C 1.38272 * 120.05236 * 0.51011 * 7 6 5 9 9 C 1.38267 * 120.10989 * 359.76556 * 8 7 6 10 10 C 1.38147 * 120.05620 * 359.97438 * 9 8 7 11 11 C 1.50699 * 109.46929 * 120.00038 * 2 1 3 12 12 O 1.21288 * 119.99718 * 119.99987 * 11 2 1 13 13 N 1.34777 * 120.00276 * 299.99574 * 11 2 1 14 14 C 1.46497 * 119.99944 * 180.02562 * 13 11 2 15 15 C 1.54181 * 111.61428 * 299.02084 * 14 13 11 16 16 C 1.54083 * 104.66897 * 260.48351 * 15 14 13 17 17 C 1.54849 * 103.10140 * 322.89206 * 16 15 14 18 18 C 1.54187 * 104.29909 * 37.52732 * 17 16 15 19 19 H 1.09006 * 112.24578 * 98.78505 * 18 17 16 20 20 C 1.53789 * 109.12810 * 223.07902 * 18 17 16 21 21 N 1.47227 * 106.35457 * 132.67777 * 20 18 17 22 22 C 1.36934 * 126.70154 * 148.76850 * 21 20 18 23 23 H 1.08001 * 119.99661 * 179.97438 * 22 21 20 24 24 C 1.38811 * 120.00103 * 359.97030 * 22 21 20 25 25 N 1.31621 * 119.99996 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99825 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47315 * 0.02562 * 26 24 22 28 28 H 1.48509 * 109.46720 * 120.00420 * 26 24 22 29 29 H 1.48502 * 109.47010 * 240.00034 * 26 24 22 30 30 C 1.47228 * 106.59428 * 328.76426 * 21 20 18 31 31 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46897 * 299.99815 * 1 2 3 33 33 H 1.08998 * 109.46956 * 60.00113 * 1 2 3 34 34 H 1.08006 * 120.02889 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.97741 * 180.23335 * 7 6 5 36 36 H 1.07996 * 119.94320 * 179.74815 * 8 7 6 37 37 H 1.07996 * 119.96847 * 179.97438 * 9 8 7 38 38 H 1.07997 * 120.02485 * 180.02562 * 10 9 8 39 39 H 0.96999 * 119.99687 * 0.02562 * 13 11 2 40 40 H 1.09000 * 110.46895 * 20.30691 * 15 14 13 41 41 H 1.09001 * 110.46380 * 142.89455 * 15 14 13 42 42 H 1.09001 * 111.10597 * 204.21283 * 16 15 14 43 43 H 1.09000 * 110.22242 * 81.15383 * 16 15 14 44 44 H 1.08998 * 110.46670 * 278.82068 * 17 16 15 45 45 H 1.09004 * 110.46786 * 156.23207 * 17 16 15 46 46 H 1.08995 * 110.08557 * 251.90091 * 20 18 17 47 47 H 1.08998 * 110.08138 * 13.46085 * 20 18 17 48 48 H 0.97002 * 119.99761 * 179.97438 * 25 24 22 49 49 H 1.09000 * 110.07785 * 272.01130 * 30 21 20 50 50 H 1.09003 * 110.07452 * 150.46394 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1108 0.0621 -2.3046 6 6 2.6773 -0.4942 -3.4423 7 6 2.7775 0.2540 -4.5991 8 6 2.3235 1.5599 -4.6208 9 6 1.7638 2.1185 -3.4865 10 6 1.6564 1.3726 -2.3287 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6966 1.1191 13 7 1.7068 -0.2500 2.4546 14 6 2.1956 -0.9403 3.6507 15 6 1.6898 -2.3954 3.7132 16 6 0.4939 -2.3515 4.6838 17 6 0.9453 -1.3240 5.7507 18 6 1.7087 -0.2517 4.9476 19 1 1.0912 0.6207 4.7333 20 6 2.9881 0.1327 5.7094 21 7 4.0803 0.1122 4.7222 22 6 5.2016 0.8981 4.7261 23 1 5.9384 0.7914 3.9436 24 6 5.3913 1.8320 5.7354 25 7 4.4936 1.9617 6.6892 26 14 6.9207 2.9045 5.7401 27 1 7.7666 2.5657 4.5676 28 1 6.5233 4.3336 5.6669 29 1 7.6877 2.6674 6.9895 30 6 3.7313 -0.9182 3.7303 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 3.0362 -1.5128 -3.4246 35 1 3.2150 -0.1798 -5.4862 36 1 2.4065 2.1445 -5.5250 37 1 1.4103 3.1388 -3.5059 38 1 1.2187 1.8093 -1.4432 39 1 1.1489 0.5385 2.5436 40 1 1.3830 -2.7351 2.7239 41 1 2.4609 -3.0498 4.1197 42 1 0.3200 -3.3276 5.1368 43 1 -0.3994 -2.0031 4.1655 44 1 1.6046 -1.7957 6.4793 45 1 0.0800 -0.8845 6.2468 46 1 2.8856 1.1315 6.1333 47 1 3.1848 -0.5915 6.4999 48 1 4.6263 2.6140 7.3947 49 1 4.1033 -1.8903 4.0539 50 1 4.1528 -0.6603 2.7587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111964123.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:58 Heat of formation + Delta-G solvation = -15.976643 kcal Electronic energy + Delta-G solvation = -31038.231378 eV Core-core repulsion = 27031.429188 eV Total energy + Delta-G solvation = -4006.802190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.79231 -39.96058 -38.34020 -37.14998 -34.56353 -33.70298 -32.21342 -31.39397 -30.93419 -29.80443 -29.40587 -27.72870 -25.08352 -24.76684 -24.23458 -22.98342 -22.34936 -21.13962 -20.28409 -19.40655 -18.95932 -18.46327 -17.45353 -16.62308 -16.25531 -15.76442 -15.66079 -15.60427 -14.93270 -14.77510 -14.57205 -14.31517 -13.99957 -13.71034 -13.58560 -13.47888 -13.28424 -12.78331 -12.66826 -12.58550 -12.48683 -11.98142 -11.75540 -11.66003 -11.53541 -11.24882 -11.19620 -11.03030 -10.93721 -10.80035 -10.72481 -10.61472 -10.26670 -10.25394 -9.94725 -9.77261 -9.53606 -9.37658 -9.18719 -8.77418 -8.61454 -8.35595 -6.87304 -5.65535 -3.10051 1.14382 1.26539 2.62524 2.77292 3.38034 3.44453 3.46774 3.61191 3.64294 4.45470 4.48823 4.63169 4.68319 4.69994 4.78511 4.88604 4.93534 5.01018 5.15916 5.18738 5.22819 5.33296 5.40678 5.46930 5.48529 5.67697 5.76574 5.79176 5.81612 5.81946 5.87066 5.99599 6.06327 6.11981 6.13250 6.21134 6.24560 6.33828 6.38757 6.45475 6.53126 6.57843 6.66885 6.74835 6.83030 7.11654 7.25107 7.44374 7.60752 7.72459 7.83284 8.37775 8.43378 9.20268 9.80463 10.47945 11.35403 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.003305 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.471195 B = 8470.213011 C =10417.655339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 H 0.099 0.901 4 O -0.283 6.283 5 C 0.134 3.866 6 C -0.151 4.151 7 C -0.081 4.081 8 C -0.163 4.163 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.517 3.483 12 O -0.514 6.514 13 N -0.699 5.699 14 C 0.164 3.836 15 C -0.118 4.118 16 C -0.123 4.123 17 C -0.113 4.113 18 C -0.113 4.113 19 H 0.074 0.926 20 C 0.139 3.861 21 N -0.598 5.598 22 C -0.214 4.214 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.136 3.864 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.397 0.603 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.123 0.877 47 H 0.013 0.987 48 H 0.251 0.749 49 H 0.028 0.972 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.604 -2.071 -15.598 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 H 0.116 0.884 4 O -0.195 6.195 5 C 0.089 3.911 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.181 4.181 9 C -0.098 4.098 10 C -0.231 4.231 11 C 0.301 3.699 12 O -0.388 6.388 13 N -0.351 5.351 14 C 0.077 3.923 15 C -0.157 4.157 16 C -0.161 4.161 17 C -0.151 4.151 18 C -0.133 4.133 19 H 0.092 0.908 20 C 0.014 3.986 21 N -0.321 5.321 22 C -0.343 4.343 23 H 0.095 0.905 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.008 3.992 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.140 0.860 47 H 0.031 0.969 48 H 0.062 0.938 49 H 0.045 0.955 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.885 -2.825 -15.513 19.746 hybrid contribution 0.446 1.201 0.105 1.285 sum -11.438 -1.624 -15.409 19.259 Atomic orbital electron populations 1.22330 0.92834 1.04316 1.03705 1.22264 0.95527 0.97331 0.84412 0.88388 1.86217 1.80825 1.36863 1.15641 1.19114 0.94876 0.90377 0.86782 1.20492 1.03533 1.01621 0.91298 1.20973 0.97847 0.94037 0.97076 1.21060 1.02430 0.95889 0.98747 1.20952 0.97209 0.99350 0.92300 1.21344 1.07176 0.94379 1.00242 1.19863 0.81011 0.85148 0.83886 1.90735 1.36293 1.25487 1.86327 1.45887 1.53078 1.31549 1.04602 1.21788 0.96058 0.91292 0.83157 1.22492 0.97964 0.95622 0.99581 1.22399 0.97773 0.99042 0.96888 1.22443 0.99443 0.95809 0.97391 1.23017 0.99786 0.96763 0.93725 0.90753 1.22083 0.82483 1.04139 0.89924 1.44596 1.21735 1.39988 1.25798 1.19162 0.96069 1.11301 1.07723 0.90454 1.24751 0.98894 0.99956 0.97186 1.69606 1.34542 1.38187 1.14854 0.85991 0.82079 0.80069 0.77373 1.20541 1.21780 1.21701 1.21655 0.90672 0.92802 0.94023 0.90683 0.90189 0.90818 0.85053 0.85412 0.86019 0.85807 0.85223 0.76899 0.91191 0.90883 0.91954 0.92312 0.91018 0.92015 0.85951 0.96950 0.93759 0.95488 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.07 37.16 0.34 -1.28 16 2 C 0.06 0.82 2.64 -27.88 -0.07 0.75 16 3 H 0.10 1.12 6.32 -51.93 -0.33 0.79 16 4 O -0.28 -4.15 9.33 -39.35 -0.37 -4.52 16 5 C 0.13 1.71 6.60 -39.22 -0.26 1.46 16 6 C -0.15 -1.75 9.99 -39.44 -0.39 -2.15 16 7 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 8 C -0.16 -1.47 10.04 -39.56 -0.40 -1.87 16 9 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 10 C -0.21 -2.30 8.24 -39.43 -0.32 -2.62 16 11 C 0.52 8.35 6.22 -10.99 -0.07 8.28 16 12 O -0.51 -10.34 14.08 -14.36 -0.20 -10.54 16 13 N -0.70 -10.70 5.12 -45.83 -0.23 -10.93 16 14 C 0.16 2.91 0.93 -129.90 -0.12 2.79 16 15 C -0.12 -1.90 5.60 -25.55 -0.14 -2.04 16 16 C -0.12 -1.66 6.86 -25.19 -0.17 -1.83 16 17 C -0.11 -1.69 6.38 -25.14 -0.16 -1.85 16 18 C -0.11 -2.01 3.67 -88.69 -0.33 -2.33 16 19 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 20 C 0.14 3.26 5.77 -3.23 -0.02 3.24 16 21 N -0.60 -15.32 3.39 -171.10 -0.58 -15.90 16 22 C -0.21 -6.01 10.34 -15.06 -0.16 -6.17 16 23 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 24 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 25 N -0.92 -26.30 10.08 55.49 0.56 -25.74 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 C 0.14 3.05 6.04 -3.23 -0.02 3.03 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.59 7.56 -51.93 -0.39 0.20 16 33 H 0.07 0.59 6.90 -51.93 -0.36 0.24 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.13 1.19 5.43 -52.49 -0.28 0.91 16 39 H 0.40 5.00 7.70 -40.82 -0.31 4.68 16 40 H 0.07 1.16 6.66 -51.93 -0.35 0.81 16 41 H 0.07 1.24 7.23 -51.93 -0.38 0.86 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.15 7.17 -51.93 -0.37 0.78 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.12 3.23 5.45 -51.93 -0.28 2.94 16 47 H 0.01 0.31 7.12 -51.93 -0.37 -0.06 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.03 0.63 7.19 -51.93 -0.37 0.26 16 50 H 0.05 1.14 6.84 -51.93 -0.36 0.78 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -32.90 387.03 -10.68 -43.58 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.48 Total: 6.53 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.19 Total: -5.38 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.26 Total: -52.58 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.57 Total: -15.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.90 -10.68 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111964123.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.603 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds