Wall clock time and date at job start Wed Apr 1 2020 03:11:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08999 * 109.47182 * 2 1
4 4 C 1.53002 * 109.47207 * 120.00416 * 2 1 3
5 5 O 1.42907 * 109.46821 * 294.99939 * 4 2 1
6 6 C 1.42902 * 113.99739 * 180.02562 * 5 4 2
7 7 C 1.50698 * 109.46913 * 179.97438 * 6 5 4
8 8 O 1.21279 * 120.00084 * 0.02562 * 7 6 5
9 9 N 1.34772 * 119.99615 * 179.97438 * 7 6 5
10 10 C 1.46507 * 120.00073 * 179.97438 * 9 7 6
11 11 H 1.09007 * 115.51224 * 350.42082 * 10 9 7
12 12 C 1.52996 * 117.44647 * 205.00622 * 10 9 7
13 13 H 1.09004 * 119.53830 * 5.71047 * 12 10 9
14 14 C 1.54387 * 118.12271 * 160.81042 * 12 10 9
15 15 N 1.48141 * 104.61860 * 87.18978 * 14 12 10
16 16 C 1.36939 * 127.83849 * 140.41392 * 15 14 12
17 17 H 1.08001 * 119.99946 * 340.87612 * 16 15 14
18 18 C 1.38812 * 119.99966 * 160.87861 * 16 15 14
19 19 N 1.31623 * 120.00000 * 163.43604 * 18 16 15
20 20 Si 1.86802 * 119.99960 * 343.43789 * 18 16 15
21 21 H 1.48503 * 109.47123 * 85.38733 * 20 18 16
22 22 H 1.48502 * 109.46778 * 205.38355 * 20 18 16
23 23 H 1.48498 * 109.47136 * 325.38178 * 20 18 16
24 24 C 1.48149 * 104.32597 * 320.41400 * 15 14 12
25 25 C 1.53002 * 117.44479 * 135.76174 * 10 9 7
26 26 H 1.09000 * 119.53456 * 355.88733 * 25 10 9
27 27 C 1.50703 * 109.46555 * 240.00255 * 2 1 3
28 28 C 1.38232 * 119.99801 * 120.00230 * 27 2 1
29 29 C 1.38232 * 120.00109 * 179.97438 * 28 27 2
30 30 C 1.38230 * 119.99935 * 359.97438 * 29 28 27
31 31 C 1.38236 * 120.00105 * 359.97438 * 30 29 28
32 32 C 1.38232 * 119.99960 * 0.02562 * 31 30 29
33 33 H 1.08995 * 109.46850 * 59.99562 * 1 2 3
34 34 H 1.08999 * 109.47182 * 180.02562 * 1 2 3
35 35 H 1.09000 * 109.46506 * 299.99686 * 1 2 3
36 36 H 1.08998 * 109.47206 * 54.99835 * 4 2 1
37 37 H 1.09000 * 109.46935 * 175.00096 * 4 2 1
38 38 H 1.09003 * 109.46733 * 299.99914 * 6 5 4
39 39 H 1.08999 * 109.47104 * 59.99558 * 6 5 4
40 40 H 0.96998 * 120.00747 * 0.02562 * 9 7 6
41 41 H 1.09003 * 110.40565 * 205.97493 * 14 12 10
42 42 H 1.08999 * 110.40637 * 328.39969 * 14 12 10
43 43 H 0.96996 * 119.99909 * 179.97438 * 19 18 16
44 44 H 1.08997 * 110.41116 * 158.37033 * 24 15 14
45 45 H 1.09000 * 110.40278 * 280.80171 * 24 15 14
46 46 H 1.08003 * 120.00291 * 359.97202 * 28 27 2
47 47 H 1.08002 * 119.99846 * 179.97438 * 29 28 27
48 48 H 1.07999 * 120.00045 * 179.70199 * 30 29 28
49 49 H 1.07998 * 120.00488 * 179.97438 * 31 30 29
50 50 H 1.08002 * 120.00374 * 179.97438 * 32 31 30
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2492
5 8 1.6620 0.0167 2.4131
6 6 2.0924 -0.5740 3.6410
7 6 1.6423 0.2833 4.7958
8 8 1.0143 1.2998 4.5877
9 7 1.9367 -0.0801 6.0597
10 6 1.4997 0.7536 7.1823
11 1 1.0877 1.7261 6.9125
12 6 2.3023 0.6638 8.4818
13 1 3.2147 0.0681 8.5098
14 6 2.1678 1.8154 9.5012
15 7 0.9988 1.4446 10.3322
16 6 0.8481 1.5949 11.6849
17 1 1.7160 1.7311 12.3131
18 6 -0.4201 1.5721 12.2488
19 7 -0.5611 1.3882 13.5445
20 14 -1.9268 1.8023 11.1687
21 1 -2.3250 0.4943 10.5893
22 1 -3.0433 2.3425 11.9854
23 1 -1.6097 2.7532 10.0731
24 6 0.0296 0.8742 9.3677
25 6 0.8924 0.0432 8.3938
26 1 0.7404 -1.0357 8.3635
27 6 2.0323 -0.7104 -1.2306
28 6 2.8270 -0.0386 -2.1405
29 6 3.2881 -0.6903 -3.2689
30 6 2.9550 -2.0139 -3.4873
31 6 2.1611 -2.6861 -2.5768
32 6 1.7000 -2.0344 -1.4483
33 1 -0.3633 0.5139 -0.8899
34 1 -0.3633 -1.0276 0.0005
35 1 -0.3632 0.5138 0.8900
36 1 1.6055 -1.7199 1.2951
37 1 3.1264 -0.7995 1.2055
38 1 1.6592 -1.5697 3.7367
39 1 3.1798 -0.6489 3.6467
40 1 2.4386 -0.8933 6.2262
41 1 3.0648 1.8850 10.1166
42 1 1.9846 2.7588 8.9869
43 1 -1.4473 1.3726 13.9385
44 1 -0.6865 0.2336 9.8823
45 1 -0.4875 1.6706 8.8326
46 1 3.0876 0.9955 -1.9697
47 1 3.9087 -0.1652 -3.9800
48 1 3.3112 -2.5217 -4.3713
49 1 1.9004 -3.7202 -2.7475
50 1 1.0794 -2.5594 -0.7372
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001115182132.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:11:45
Heat of formation + Delta-G solvation = 7.167435 kcal
Electronic energy + Delta-G solvation = -28394.381599 eV
Core-core repulsion = 24388.583011 eV
Total energy + Delta-G solvation = -4005.798587 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-40.19953 -39.92256 -38.83872 -37.78289 -34.95509 -34.66352 -32.75757 -31.35712
-30.95877 -29.97809 -28.45124 -27.82953 -26.46577 -25.47701 -23.65570 -22.85404
-21.96079 -20.81513 -20.68650 -20.41562 -19.64711 -17.60399 -17.37751 -17.06823
-16.78024 -16.66009 -16.18620 -15.61436 -15.44576 -15.11618 -14.75192 -14.71489
-14.01187 -13.92370 -13.72537 -13.59867 -13.56547 -13.41660 -12.97644 -12.83312
-12.51439 -12.45874 -12.38833 -12.25282 -11.80940 -11.70387 -11.49398 -11.23281
-11.21638 -11.05193 -11.03548 -10.76632 -10.23185 -10.08843 -10.05366 -9.87830
-9.59077 -9.35898 -9.34911 -9.16182 -8.82943 -8.60831 -7.14273 -5.94913
-3.29454 0.89138 0.96140 2.45806 2.52103 3.31729 3.32703 3.48649
3.50181 3.62735 4.04096 4.28883 4.38700 4.47745 4.52509 4.57673
4.62675 4.68294 4.72057 4.79499 4.82415 4.85677 4.91584 5.06163
5.08087 5.08698 5.10310 5.17439 5.31759 5.32183 5.51267 5.53484
5.57367 5.64429 5.67606 5.71579 5.73409 5.95022 5.98848 6.05599
6.08496 6.21331 6.21535 6.45847 6.50781 6.53096 6.56027 6.63090
6.70643 6.76125 7.39145 7.57022 8.12489 8.29732 8.75545 9.63987
10.17557 11.21192
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.031671 B = 0.001533 C = 0.001505
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 883.879958 B =18264.710325 C =18600.768131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.050 4.050
3 H 0.089 0.911
4 C 0.069 3.931
5 O -0.359 6.359
6 C 0.047 3.953
7 C 0.516 3.484
8 O -0.515 6.515
9 N -0.698 5.698
10 C 0.101 3.899
11 H 0.134 0.866
12 C -0.176 4.176
13 H 0.111 0.889
14 C 0.157 3.843
15 N -0.604 5.604
16 C -0.237 4.237
17 H 0.096 0.904
18 C 0.020 3.980
19 N -0.914 5.914
20 Si 0.887 3.113
21 H -0.286 1.286
22 H -0.302 1.302
23 H -0.270 1.270
24 C 0.129 3.871
25 C -0.175 4.175
26 H 0.110 0.890
27 C -0.075 4.075
28 C -0.113 4.113
29 C -0.119 4.119
30 C -0.124 4.124
31 C -0.119 4.119
32 C -0.115 4.115
33 H 0.056 0.944
34 H 0.054 0.946
35 H 0.072 0.928
36 H 0.053 0.947
37 H 0.052 0.948
38 H 0.080 0.920
39 H 0.080 0.920
40 H 0.400 0.600
41 H 0.063 0.937
42 H 0.034 0.966
43 H 0.264 0.736
44 H 0.072 0.928
45 H 0.038 0.962
46 H 0.123 0.877
47 H 0.122 0.878
48 H 0.121 0.879
49 H 0.122 0.878
50 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.981 -9.901 -33.931 36.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.068 4.068
3 H 0.107 0.893
4 C -0.008 4.008
5 O -0.277 6.277
6 C -0.033 4.033
7 C 0.301 3.699
8 O -0.389 6.389
9 N -0.349 5.349
10 C -0.005 4.005
11 H 0.151 0.849
12 C -0.197 4.197
13 H 0.129 0.871
14 C 0.031 3.969
15 N -0.329 5.329
16 C -0.364 4.364
17 H 0.113 0.887
18 C -0.178 4.178
19 N -0.558 5.558
20 Si 0.718 3.282
21 H -0.214 1.214
22 H -0.230 1.230
23 H -0.195 1.195
24 C 0.004 3.996
25 C -0.196 4.196
26 H 0.128 0.872
27 C -0.076 4.076
28 C -0.131 4.131
29 C -0.137 4.137
30 C -0.142 4.142
31 C -0.137 4.137
32 C -0.133 4.133
33 H 0.075 0.925
34 H 0.073 0.927
35 H 0.091 0.909
36 H 0.071 0.929
37 H 0.071 0.929
38 H 0.098 0.902
39 H 0.098 0.902
40 H 0.234 0.766
41 H 0.081 0.919
42 H 0.052 0.948
43 H 0.074 0.926
44 H 0.090 0.910
45 H 0.056 0.944
46 H 0.141 0.859
47 H 0.140 0.860
48 H 0.139 0.861
49 H 0.140 0.860
50 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 8.282 -8.940 -33.803 35.933
hybrid contribution -0.393 -0.843 -0.418 1.019
sum 7.889 -9.782 -34.222 36.456
Atomic orbital electron populations
1.21809 0.93249 1.02127 1.02731 1.20065 0.97149 0.99811 0.89784
0.89251 1.22608 0.98738 0.94663 0.84742 1.88001 1.78298 1.49158
1.12238 1.22167 1.00031 0.96312 0.84822 1.20177 0.80047 0.86323
0.83400 1.90749 1.38381 1.25267 1.84496 1.45224 1.57509 1.27311
1.04835 1.21825 1.01783 0.96245 0.80678 0.84880 1.24325 0.95452
1.03291 0.96600 0.87125 1.21136 0.92113 0.92862 0.90782 1.45539
1.14170 1.69631 1.03533 1.18665 0.94169 1.45093 0.78445 0.88678
1.25003 0.97275 1.00163 0.95408 1.69770 1.23040 1.52712 1.10243
0.86922 0.83261 0.78165 0.79852 1.21372 1.22963 1.19533 1.21673
0.92889 0.94986 0.90098 1.24371 0.97115 0.99709 0.98421 0.87239
1.19749 0.97607 0.94229 0.95966 1.21125 0.97571 1.00064 0.94383
1.21168 0.99997 0.94956 0.97546 1.21180 0.98682 0.94919 0.99445
1.21164 0.97989 0.99978 0.94555 1.21049 1.00092 0.94294 0.97822
0.92513 0.92691 0.90935 0.92882 0.92932 0.90206 0.90210 0.76577
0.91875 0.94840 0.92622 0.90981 0.94439 0.85879 0.86003 0.86146
0.86037 0.86023
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.14 8.90 37.16 0.33 -0.81 16
2 C -0.05 -0.38 2.80 -91.76 -0.26 -0.64 16
3 H 0.09 0.73 7.88 -51.93 -0.41 0.32 16
4 C 0.07 0.53 5.06 37.16 0.19 0.72 16
5 O -0.36 -3.92 9.41 -55.14 -0.52 -4.44 16
6 C 0.05 0.41 6.42 36.00 0.23 0.64 16
7 C 0.52 6.69 7.91 -10.99 -0.09 6.60 16
8 O -0.52 -9.26 16.07 -14.35 -0.23 -9.49 16
9 N -0.70 -8.13 5.56 -53.80 -0.30 -8.43 16
10 C 0.10 1.53 5.97 -67.93 -0.41 1.12 16
11 H 0.13 2.33 7.40 -51.93 -0.38 1.94 16
12 C -0.18 -2.78 7.06 -89.22 -0.63 -3.41 16
13 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16
14 C 0.16 3.06 7.04 -2.41 -0.02 3.05 16
15 N -0.60 -14.62 3.19 -168.86 -0.54 -15.16 16
16 C -0.24 -6.72 10.78 -15.06 -0.16 -6.88 16
17 H 0.10 2.83 8.06 -52.49 -0.42 2.41 16
18 C 0.02 0.58 5.49 -17.43 -0.10 0.48 16
19 N -0.91 -28.23 13.97 55.49 0.78 -27.45 16
20 Si 0.89 22.83 24.49 -169.99 -4.16 18.67 16
21 H -0.29 -7.08 6.36 56.52 0.36 -6.73 16
22 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16
23 H -0.27 -6.86 6.33 56.52 0.36 -6.50 16
24 C 0.13 2.83 4.49 -2.41 -0.01 2.82 16
25 C -0.17 -2.99 7.06 -89.22 -0.63 -3.62 16
26 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16
27 C -0.08 -0.54 4.78 -104.62 -0.50 -1.04 16
28 C -0.11 -0.78 9.67 -39.59 -0.38 -1.16 16
29 C -0.12 -0.73 10.05 -39.59 -0.40 -1.13 16
30 C -0.12 -0.74 10.05 -39.59 -0.40 -1.13 16
31 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16
32 C -0.11 -0.76 8.76 -39.58 -0.35 -1.11 16
33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
34 H 0.05 0.39 7.39 -51.93 -0.38 0.01 16
35 H 0.07 0.71 7.82 -51.93 -0.41 0.30 16
36 H 0.05 0.34 7.57 -51.93 -0.39 -0.05 16
37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.40 3.25 8.83 -40.82 -0.36 2.89 16
41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
42 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16
43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
44 H 0.07 1.69 5.06 -51.93 -0.26 1.43 16
45 H 0.04 0.85 6.79 -51.93 -0.35 0.49 16
46 H 0.12 0.70 7.95 -52.48 -0.42 0.28 16
47 H 0.12 0.53 8.06 -52.49 -0.42 0.10 16
48 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16
49 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16
50 H 0.12 0.67 7.16 -52.49 -0.38 0.29 16
LS Contribution 404.34 15.07 6.09 6.09
Total: -1.00 -35.18 404.34 -10.89 -46.07
By element:
Atomic # 1 Polarization: 8.77 SS G_CDS: -8.04 Total: 0.73 kcal
Atomic # 6 Polarization: -2.63 SS G_CDS: -3.97 Total: -6.59 kcal
Atomic # 7 Polarization: -50.97 SS G_CDS: -0.06 Total: -51.03 kcal
Atomic # 8 Polarization: -13.18 SS G_CDS: -0.75 Total: -13.93 kcal
Atomic # 14 Polarization: 22.83 SS G_CDS: -4.16 Total: 18.67 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -35.18 -10.89 -46.07 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115182132.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.238 kcal
(2) G-P(sol) polarization free energy of solvation -35.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.070 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds