Wall clock time and date at job start Wed Apr 1 2020 03:11:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08999 * 109.47182 * 2 1
4 4 C 1.53002 * 109.47207 * 120.00416 * 2 1 3
5 5 O 1.42907 * 109.46821 * 294.99939 * 4 2 1
6 6 C 1.42902 * 113.99739 * 180.02562 * 5 4 2
7 7 C 1.50698 * 109.46913 * 179.97438 * 6 5 4
8 8 O 1.21279 * 120.00084 * 0.02562 * 7 6 5
9 9 N 1.34772 * 119.99615 * 179.97438 * 7 6 5
10 10 C 1.46507 * 120.00073 * 179.97438 * 9 7 6
11 11 H 1.09007 * 115.51224 * 350.42082 * 10 9 7
12 12 C 1.52996 * 117.44647 * 205.00622 * 10 9 7
13 13 H 1.09004 * 119.53830 * 5.71047 * 12 10 9
14 14 C 1.54387 * 118.12271 * 160.81042 * 12 10 9
15 15 N 1.48141 * 104.61860 * 87.18978 * 14 12 10
16 16 C 1.36939 * 127.83849 * 140.41392 * 15 14 12
17 17 H 1.08001 * 119.99946 * 340.87612 * 16 15 14
18 18 C 1.38812 * 119.99966 * 160.87861 * 16 15 14
19 19 N 1.31623 * 120.00000 * 163.43604 * 18 16 15
20 20 Si 1.86802 * 119.99960 * 343.43789 * 18 16 15
21 21 H 1.48503 * 109.47123 * 85.38733 * 20 18 16
22 22 H 1.48502 * 109.46778 * 205.38355 * 20 18 16
23 23 H 1.48498 * 109.47136 * 325.38178 * 20 18 16
24 24 C 1.48149 * 104.32597 * 320.41400 * 15 14 12
25 25 C 1.53002 * 117.44479 * 135.76174 * 10 9 7
26 26 H 1.09000 * 119.53456 * 355.88733 * 25 10 9
27 27 C 1.50703 * 109.46555 * 240.00255 * 2 1 3
28 28 C 1.38232 * 119.99801 * 120.00230 * 27 2 1
29 29 C 1.38232 * 120.00109 * 179.97438 * 28 27 2
30 30 C 1.38230 * 119.99935 * 359.97438 * 29 28 27
31 31 C 1.38236 * 120.00105 * 359.97438 * 30 29 28
32 32 C 1.38232 * 119.99960 * 0.02562 * 31 30 29
33 33 H 1.08995 * 109.46850 * 59.99562 * 1 2 3
34 34 H 1.08999 * 109.47182 * 180.02562 * 1 2 3
35 35 H 1.09000 * 109.46506 * 299.99686 * 1 2 3
36 36 H 1.08998 * 109.47206 * 54.99835 * 4 2 1
37 37 H 1.09000 * 109.46935 * 175.00096 * 4 2 1
38 38 H 1.09003 * 109.46733 * 299.99914 * 6 5 4
39 39 H 1.08999 * 109.47104 * 59.99558 * 6 5 4
40 40 H 0.96998 * 120.00747 * 0.02562 * 9 7 6
41 41 H 1.09003 * 110.40565 * 205.97493 * 14 12 10
42 42 H 1.08999 * 110.40637 * 328.39969 * 14 12 10
43 43 H 0.96996 * 119.99909 * 179.97438 * 19 18 16
44 44 H 1.08997 * 110.41116 * 158.37033 * 24 15 14
45 45 H 1.09000 * 110.40278 * 280.80171 * 24 15 14
46 46 H 1.08003 * 120.00291 * 359.97202 * 28 27 2
47 47 H 1.08002 * 119.99846 * 179.97438 * 29 28 27
48 48 H 1.07999 * 120.00045 * 179.70199 * 30 29 28
49 49 H 1.07998 * 120.00488 * 179.97438 * 31 30 29
50 50 H 1.08002 * 120.00374 * 179.97438 * 32 31 30
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7213 1.2492
5 8 1.6620 0.0167 2.4131
6 6 2.0924 -0.5740 3.6410
7 6 1.6423 0.2833 4.7958
8 8 1.0143 1.2998 4.5877
9 7 1.9367 -0.0801 6.0597
10 6 1.4997 0.7536 7.1823
11 1 1.0877 1.7261 6.9125
12 6 2.3023 0.6638 8.4818
13 1 3.2147 0.0681 8.5098
14 6 2.1678 1.8154 9.5012
15 7 0.9988 1.4446 10.3322
16 6 0.8481 1.5949 11.6849
17 1 1.7160 1.7311 12.3131
18 6 -0.4201 1.5721 12.2488
19 7 -0.5611 1.3882 13.5445
20 14 -1.9268 1.8023 11.1687
21 1 -2.3250 0.4943 10.5893
22 1 -3.0433 2.3425 11.9854
23 1 -1.6097 2.7532 10.0731
24 6 0.0296 0.8742 9.3677
25 6 0.8924 0.0432 8.3938
26 1 0.7404 -1.0357 8.3635
27 6 2.0323 -0.7104 -1.2306
28 6 2.8270 -0.0386 -2.1405
29 6 3.2881 -0.6903 -3.2689
30 6 2.9550 -2.0139 -3.4873
31 6 2.1611 -2.6861 -2.5768
32 6 1.7000 -2.0344 -1.4483
33 1 -0.3633 0.5139 -0.8899
34 1 -0.3633 -1.0276 0.0005
35 1 -0.3632 0.5138 0.8900
36 1 1.6055 -1.7199 1.2951
37 1 3.1264 -0.7995 1.2055
38 1 1.6592 -1.5697 3.7367
39 1 3.1798 -0.6489 3.6467
40 1 2.4386 -0.8933 6.2262
41 1 3.0648 1.8850 10.1166
42 1 1.9846 2.7588 8.9869
43 1 -1.4473 1.3726 13.9385
44 1 -0.6865 0.2336 9.8823
45 1 -0.4875 1.6706 8.8326
46 1 3.0876 0.9955 -1.9697
47 1 3.9087 -0.1652 -3.9800
48 1 3.3112 -2.5217 -4.3713
49 1 1.9004 -3.7202 -2.7475
50 1 1.0794 -2.5594 -0.7372
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001115182132.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:11:44
Heat of formation + Delta-G solvation = -14.985749 kcal
Electronic energy + Delta-G solvation = -28395.342233 eV
Core-core repulsion = 24388.583011 eV
Total energy + Delta-G solvation = -4006.759221 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.27409 -40.52884 -40.02676 -38.57731 -36.19810 -35.49494 -34.45980 -32.73688
-31.78353 -30.51468 -29.44889 -29.28563 -27.57456 -26.82197 -24.14663 -23.57094
-23.27617 -22.19847 -21.81772 -21.14016 -20.97042 -18.97629 -18.28672 -18.26167
-17.75730 -17.36554 -17.25007 -16.77043 -16.28170 -15.95149 -15.69045 -15.53549
-15.49503 -15.22376 -14.84970 -14.54371 -14.44113 -14.29197 -14.13470 -14.01097
-13.78683 -13.45947 -13.33201 -13.16587 -13.09411 -12.91648 -12.67461 -12.44340
-12.29159 -12.12779 -12.02331 -11.77156 -11.72784 -11.57164 -11.53930 -11.08524
-10.88701 -10.79312 -10.66178 -9.80114 -9.79826 -9.62353 -9.16913 -8.19555
-5.49838 0.43725 0.51990 1.25505 1.37100 1.43839 1.47583 1.63022
2.37059 2.73803 2.77514 2.96031 3.07145 3.24629 3.62382 3.70892
3.77494 3.79820 3.87637 3.97482 4.12381 4.16401 4.19219 4.24835
4.26302 4.31767 4.32485 4.33543 4.38958 4.60006 4.62302 4.65273
4.65588 4.72050 4.78306 4.80912 4.94353 4.96604 5.10130 5.14272
5.14606 5.20317 5.22737 5.32773 5.44978 5.56829 5.60429 5.65675
5.73730 6.06467 6.08226 6.13673 6.52192 6.64664 7.19933 7.45889
8.10185 9.00361
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.031671 B = 0.001533 C = 0.001505
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 883.879958 B =18264.710325 C =18600.768131
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.048 4.048
3 H 0.077 0.923
4 C 0.070 3.930
5 O -0.393 6.393
6 C 0.051 3.949
7 C 0.512 3.488
8 O -0.573 6.573
9 N -0.679 5.679
10 C 0.119 3.881
11 H 0.109 0.891
12 C -0.155 4.155
13 H 0.147 0.853
14 C 0.148 3.852
15 N -0.626 5.626
16 C -0.226 4.226
17 H 0.069 0.931
18 C -0.036 4.036
19 N -0.959 5.959
20 Si 0.945 3.055
21 H -0.271 1.271
22 H -0.307 1.307
23 H -0.269 1.269
24 C 0.122 3.878
25 C -0.179 4.179
26 H 0.135 0.865
27 C -0.084 4.084
28 C -0.128 4.128
29 C -0.127 4.127
30 C -0.131 4.131
31 C -0.126 4.126
32 C -0.122 4.122
33 H 0.055 0.945
34 H 0.064 0.936
35 H 0.049 0.951
36 H 0.070 0.930
37 H 0.064 0.936
38 H 0.113 0.887
39 H 0.114 0.886
40 H 0.423 0.577
41 H 0.068 0.932
42 H 0.034 0.966
43 H 0.263 0.737
44 H 0.054 0.946
45 H 0.029 0.971
46 H 0.127 0.873
47 H 0.137 0.863
48 H 0.139 0.861
49 H 0.139 0.861
50 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.319 -12.334 -36.992 40.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.066 4.066
3 H 0.095 0.905
4 C -0.006 4.006
5 O -0.312 6.312
6 C -0.028 4.028
7 C 0.300 3.700
8 O -0.451 6.451
9 N -0.332 5.332
10 C 0.012 3.988
11 H 0.126 0.874
12 C -0.176 4.176
13 H 0.165 0.835
14 C 0.023 3.977
15 N -0.351 5.351
16 C -0.354 4.354
17 H 0.086 0.914
18 C -0.231 4.231
19 N -0.606 5.606
20 Si 0.774 3.226
21 H -0.198 1.198
22 H -0.235 1.235
23 H -0.194 1.194
24 C -0.003 4.003
25 C -0.200 4.200
26 H 0.153 0.847
27 C -0.084 4.084
28 C -0.146 4.146
29 C -0.145 4.145
30 C -0.149 4.149
31 C -0.144 4.144
32 C -0.140 4.140
33 H 0.074 0.926
34 H 0.083 0.917
35 H 0.069 0.931
36 H 0.088 0.912
37 H 0.082 0.918
38 H 0.131 0.869
39 H 0.132 0.868
40 H 0.261 0.739
41 H 0.086 0.914
42 H 0.052 0.948
43 H 0.072 0.928
44 H 0.073 0.927
45 H 0.047 0.953
46 H 0.145 0.855
47 H 0.155 0.845
48 H 0.156 0.844
49 H 0.157 0.843
50 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 9.669 -11.422 -36.917 39.835
hybrid contribution -0.706 -0.047 0.461 0.845
sum 8.963 -11.469 -36.456 39.254
Atomic orbital electron populations
1.21753 0.93793 1.02388 1.01559 1.20012 0.96663 0.99427 0.90547
0.90483 1.22705 0.99476 0.94923 0.83477 1.87966 1.79043 1.50672
1.13524 1.22292 1.02039 0.96093 0.82392 1.21036 0.78693 0.85868
0.84424 1.90735 1.41086 1.27997 1.85314 1.44998 1.57086 1.27513
1.03571 1.21383 1.00606 0.95536 0.81288 0.87360 1.24215 0.96167
1.01476 0.95742 0.83499 1.21331 0.90620 0.94476 0.91279 1.45659
1.16168 1.70549 1.02745 1.18631 0.93259 1.43068 0.80459 0.91367
1.25597 0.99941 1.01105 0.96429 1.69888 1.23489 1.55286 1.11956
0.85978 0.79869 0.78616 0.78088 1.19752 1.23536 1.19433 1.21641
0.93084 0.95059 0.90487 1.24188 0.96618 1.00311 0.98874 0.84747
1.19727 0.98182 0.94632 0.95828 1.21305 0.97982 1.00512 0.94848
1.21420 1.00105 0.95362 0.97604 1.21486 0.98410 0.94944 1.00067
1.21448 0.97716 1.00910 0.94298 1.21221 1.00293 0.94119 0.98388
0.92550 0.91682 0.93149 0.91217 0.91825 0.86906 0.86844 0.73895
0.91366 0.94780 0.92801 0.92744 0.95326 0.85524 0.84526 0.84353
0.84285 0.85012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.14 8.90 71.98 0.64 -1.50 16
2 C -0.05 -0.69 2.80 -11.54 -0.03 -0.73 16
3 H 0.08 1.27 7.88 -2.39 -0.02 1.25 16
4 C 0.07 0.92 5.06 71.98 0.36 1.29 16
5 O -0.39 -7.81 9.41 -129.94 -1.22 -9.03 16
6 C 0.05 0.71 6.42 71.24 0.46 1.17 16
7 C 0.51 11.98 7.91 87.66 0.69 12.67 16
8 O -0.57 -20.29 16.07 16.01 0.26 -20.03 16
9 N -0.68 -13.31 5.56 -442.53 -2.46 -15.77 16
10 C 0.12 3.32 5.97 44.99 0.27 3.59 16
11 H 0.11 3.69 7.40 -2.38 -0.02 3.67 16
12 C -0.16 -4.43 7.06 -9.89 -0.07 -4.50 16
13 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16
14 C 0.15 5.58 7.04 86.53 0.61 6.19 16
15 N -0.63 -30.15 3.19 -688.17 -2.20 -32.35 16
16 C -0.23 -13.06 10.78 84.03 0.91 -12.16 16
17 H 0.07 4.22 8.06 -2.91 -0.02 4.19 16
18 C -0.04 -2.18 5.49 84.86 0.47 -1.71 16
19 N -0.96 -60.95 13.97 21.65 0.30 -60.65 16
20 Si 0.94 48.15 24.49 68.60 1.68 49.83 16
21 H -0.27 -12.99 6.36 99.48 0.63 -12.35 16
22 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16
23 H -0.27 -13.47 6.33 99.48 0.63 -12.84 16
24 C 0.12 5.26 4.49 86.53 0.39 5.65 16
25 C -0.18 -5.64 7.06 -9.89 -0.07 -5.71 16
26 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16
27 C -0.08 -1.09 4.78 -19.87 -0.09 -1.19 16
28 C -0.13 -1.63 9.67 22.27 0.22 -1.42 16
29 C -0.13 -1.37 10.05 22.27 0.22 -1.15 16
30 C -0.13 -1.28 10.05 22.27 0.22 -1.06 16
31 C -0.13 -1.25 10.05 22.27 0.22 -1.02 16
32 C -0.12 -1.37 8.76 22.27 0.20 -1.18 16
33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
34 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16
35 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16
36 H 0.07 0.67 7.57 -2.39 -0.02 0.65 16
37 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16
38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16
40 H 0.42 4.66 8.83 -92.71 -0.82 3.85 16
41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16
42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16
43 H 0.26 15.91 8.31 -92.71 -0.77 15.13 16
44 H 0.05 2.51 5.06 -2.39 -0.01 2.50 16
45 H 0.03 1.28 6.79 -2.39 -0.02 1.27 16
46 H 0.13 1.39 7.95 -2.91 -0.02 1.37 16
47 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16
48 H 0.14 0.77 8.06 -2.91 -0.02 0.75 16
49 H 0.14 0.80 8.06 -2.91 -0.02 0.78 16
50 H 0.13 1.12 7.16 -2.91 -0.02 1.10 16
Total: -1.00 -80.01 404.34 1.93 -78.07
By element:
Atomic # 1 Polarization: 12.73 SS G_CDS: -0.03 Total: 12.70 kcal
Atomic # 6 Polarization: -8.37 SS G_CDS: 5.61 Total: -2.76 kcal
Atomic # 7 Polarization: -104.42 SS G_CDS: -4.36 Total: -108.78 kcal
Atomic # 8 Polarization: -28.10 SS G_CDS: -0.97 Total: -29.06 kcal
Atomic # 14 Polarization: 48.15 SS G_CDS: 1.68 Total: 49.83 kcal
Total: -80.01 1.93 -78.07 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001115182132.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.087 kcal
(2) G-P(sol) polarization free energy of solvation -80.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.986 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds