Wall clock time and date at job start Wed Apr 1 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47439 * 2 1 4 4 O 1.42901 * 109.47497 * 239.99914 * 2 1 3 5 5 C 1.42900 * 114.00204 * 89.99945 * 4 2 1 6 6 C 1.52999 * 109.47354 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.46830 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.00056 * 269.72142 * 7 6 5 9 9 C 1.38232 * 120.00076 * 179.76878 * 8 7 6 10 10 C 1.38236 * 119.99980 * 0.50905 * 9 8 7 11 11 C 1.38234 * 119.99872 * 359.74411 * 10 9 8 12 12 C 1.38235 * 119.99800 * 89.99651 * 7 6 5 13 13 C 1.50701 * 109.47409 * 119.99830 * 2 1 3 14 14 O 1.21281 * 120.00361 * 119.99834 * 13 2 1 15 15 N 1.34776 * 120.00023 * 300.00975 * 13 2 1 16 16 C 1.46502 * 120.00055 * 179.97438 * 15 13 2 17 17 H 1.08992 * 115.49410 * 350.37778 * 16 15 13 18 18 C 1.53001 * 117.44172 * 204.99389 * 16 15 13 19 19 H 1.09002 * 119.53743 * 5.71127 * 18 16 15 20 20 C 1.54390 * 118.12269 * 160.81356 * 18 16 15 21 21 N 1.48140 * 104.61976 * 89.20474 * 20 18 16 22 22 C 1.36936 * 127.83547 * 140.41411 * 21 20 18 23 23 H 1.08001 * 120.00581 * 344.76578 * 22 21 20 24 24 C 1.38818 * 120.00148 * 164.76416 * 22 21 20 25 25 N 1.31616 * 119.99609 * 351.33316 * 24 22 21 26 26 Si 1.86797 * 120.00268 * 171.32615 * 24 22 21 27 27 H 1.48501 * 109.47072 * 84.99972 * 26 24 22 28 28 H 1.48506 * 109.47120 * 325.00344 * 26 24 22 29 29 H 1.48494 * 109.47321 * 204.99822 * 26 24 22 30 30 C 1.48141 * 104.32691 * 320.67556 * 21 20 18 31 31 C 1.53991 * 104.81764 * 39.27498 * 30 21 20 32 32 H 1.08999 * 118.03000 * 115.98356 * 31 30 21 33 33 H 1.08999 * 109.47349 * 60.00500 * 1 2 3 34 34 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47216 * 300.00020 * 1 2 3 36 36 H 1.09008 * 109.46866 * 300.00607 * 5 4 2 37 37 H 1.09004 * 109.46878 * 59.99871 * 5 4 2 38 38 H 1.09004 * 109.46607 * 299.99720 * 6 5 4 39 39 H 1.08996 * 109.46960 * 59.99959 * 6 5 4 40 40 H 1.08000 * 119.99733 * 0.02562 * 8 7 6 41 41 H 1.08003 * 120.00286 * 180.23057 * 9 8 7 42 42 H 1.07999 * 120.00479 * 179.72904 * 10 9 8 43 43 H 1.07998 * 120.00291 * 179.97438 * 11 10 9 44 44 H 1.07998 * 120.00247 * 0.02562 * 12 7 6 45 45 H 0.96997 * 120.00261 * 359.97438 * 15 13 2 46 46 H 1.09001 * 110.40422 * 330.41760 * 20 18 16 47 47 H 1.08998 * 110.50649 * 208.04405 * 20 18 16 48 48 H 0.97005 * 119.99916 * 180.02562 * 25 24 22 49 49 H 1.09000 * 110.41049 * 158.10498 * 30 21 20 50 50 H 1.08998 * 110.40933 * 280.54404 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7080 -0.6408 -3.4792 7 6 2.9117 0.2624 -4.6681 8 6 1.8782 0.4726 -5.5616 9 6 2.0635 1.3049 -6.6496 10 6 3.2858 1.9188 -6.8499 11 6 4.3210 1.7045 -5.9593 12 6 4.1340 0.8763 -4.8683 13 6 2.0323 -0.7104 1.2305 14 8 2.7296 -1.6965 1.1193 15 7 1.7066 -0.2500 2.4546 16 6 2.1946 -0.9409 3.6508 17 1 2.6737 -1.9037 3.4738 18 6 1.3808 -0.7840 4.9369 19 1 0.4292 -0.2532 4.9093 20 6 1.5894 -1.8214 6.0611 21 7 2.6926 -1.2680 6.8805 22 6 2.8142 -1.2812 8.2444 23 1 1.9561 -1.5044 8.8610 24 6 4.0405 -1.0076 8.8346 25 7 5.1208 -0.9042 8.0898 26 14 4.1575 -0.7861 10.6857 27 1 4.3018 -2.1138 11.3350 28 1 2.9257 -0.1228 11.1837 29 1 5.3380 0.0543 11.0100 30 6 3.6313 -0.6914 5.8900 31 6 2.7292 -0.0427 4.8238 32 1 2.7816 1.0387 4.6976 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 -0.3634 0.5138 0.8900 36 1 1.2538 0.6547 -2.5588 37 1 2.9320 0.9513 -2.0450 38 1 3.6543 -1.1128 -3.2145 39 1 1.9759 -1.4090 -3.7281 40 1 0.9245 -0.0103 -5.4074 41 1 1.2548 1.4720 -7.3457 42 1 3.4320 2.5656 -7.7023 43 1 5.2761 2.1838 -6.1159 44 1 4.9430 0.7083 -4.1729 45 1 1.1492 0.5388 2.5436 46 1 1.8751 -2.7855 5.6404 47 1 0.6845 -1.9222 6.6604 48 1 5.9778 -0.7134 8.5022 49 1 4.2644 0.0614 6.3597 50 1 4.2407 -1.4762 5.4421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115185875.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:39 Heat of formation + Delta-G solvation = 0.995816 kcal Electronic energy + Delta-G solvation = -28410.612528 eV Core-core repulsion = 24404.546319 eV Total energy + Delta-G solvation = -4006.066209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.11395 -39.67354 -38.57337 -37.56336 -34.48634 -34.01467 -32.81427 -31.43807 -31.28144 -29.99619 -28.72248 -27.16452 -25.82447 -24.73948 -23.66173 -22.96652 -21.83614 -21.31815 -20.50205 -20.07967 -19.23150 -17.50599 -17.27861 -16.99513 -16.79939 -16.27371 -15.92194 -15.47605 -15.21140 -14.93927 -14.70988 -14.48562 -13.82480 -13.77408 -13.63293 -13.46473 -13.29002 -13.09073 -12.97251 -12.74525 -12.66190 -12.27559 -12.22226 -11.78434 -11.52024 -11.47404 -11.43736 -11.39847 -11.26478 -10.99342 -10.82578 -10.40472 -10.21304 -10.17616 -10.12288 -9.73690 -9.54133 -9.31412 -9.20295 -9.11716 -8.74576 -8.25289 -6.86776 -5.79323 -3.13957 0.92519 1.00553 2.57902 2.70626 3.35195 3.38570 3.43450 3.45364 3.67172 4.23692 4.42652 4.44630 4.48328 4.50135 4.62313 4.63350 4.70964 4.75232 4.79456 4.93416 5.05542 5.08745 5.12310 5.14117 5.23655 5.35670 5.37082 5.38679 5.47962 5.54566 5.57321 5.68329 5.75325 5.78485 5.82534 5.88469 6.06925 6.12589 6.14926 6.24334 6.24541 6.51952 6.60847 6.68371 6.71897 6.87943 6.89198 7.37191 7.54105 7.55970 7.71831 8.20698 8.27429 9.10900 9.73676 10.50580 11.34859 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.001523 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.597509 B =18375.377501 C =19003.943388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.087 0.913 4 O -0.356 6.356 5 C 0.067 3.933 6 C -0.080 4.080 7 C -0.081 4.081 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.515 3.485 14 O -0.516 6.516 15 N -0.695 5.695 16 C 0.093 3.907 17 H 0.134 0.866 18 C -0.178 4.178 19 H 0.101 0.899 20 C 0.155 3.845 21 N -0.593 5.593 22 C -0.229 4.229 23 H 0.077 0.923 24 C -0.005 4.005 25 N -0.914 5.914 26 Si 0.913 3.087 27 H -0.287 1.287 28 H -0.281 1.281 29 H -0.289 1.289 30 C 0.184 3.816 31 C -0.179 4.179 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.398 0.602 46 H 0.027 0.973 47 H 0.052 0.948 48 H 0.255 0.745 49 H 0.091 0.909 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 7.965 -28.811 31.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.104 0.896 4 O -0.274 6.274 5 C -0.010 4.010 6 C -0.117 4.117 7 C -0.081 4.081 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.132 4.132 13 C 0.300 3.700 14 O -0.390 6.390 15 N -0.345 5.345 16 C -0.013 4.013 17 H 0.152 0.848 18 C -0.199 4.199 19 H 0.119 0.881 20 C 0.028 3.972 21 N -0.317 5.317 22 C -0.357 4.357 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.560 5.560 26 Si 0.743 3.257 27 H -0.214 1.214 28 H -0.207 1.207 29 H -0.215 1.215 30 C 0.058 3.942 31 C -0.201 4.201 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.231 0.769 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.110 0.890 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.059 7.051 -28.688 30.622 hybrid contribution -0.319 1.013 0.909 1.398 sum -8.377 8.063 -27.779 30.114 Atomic orbital electron populations 1.22248 0.93572 1.03995 1.03036 1.21865 0.94989 0.96283 0.85660 0.89552 1.88031 1.86553 1.34030 1.18765 1.22552 0.99592 0.92876 0.85985 1.20465 1.03543 0.96969 0.90747 1.19750 0.94041 0.98062 0.96243 1.21106 0.98704 0.98774 0.94732 1.21163 0.97479 0.97330 0.97821 1.21186 0.93504 1.00039 0.99484 1.21185 0.99132 0.98516 0.94831 1.21156 0.97038 0.97059 0.97941 1.20283 0.80685 0.85098 0.83979 1.90736 1.36446 1.25499 1.86293 1.45282 1.53023 1.31500 1.04744 1.22526 1.01819 0.97831 0.79077 0.84846 1.24318 0.95724 1.03726 0.96139 0.88094 1.21133 0.92840 0.93014 0.90232 1.45165 1.20543 1.64345 1.01607 1.18972 0.94435 1.42705 0.79545 0.90548 1.24905 0.95029 1.02155 0.98142 1.69896 0.98263 1.53983 1.33905 0.86133 0.77117 0.77749 0.84691 1.21351 1.20661 1.21548 1.20973 0.90524 0.96622 0.86062 1.25333 0.98735 0.97709 0.98327 0.87916 0.91297 0.90881 0.90875 0.93024 0.92959 0.89677 0.89885 0.85935 0.86040 0.86137 0.85964 0.85784 0.76853 0.95488 0.92986 0.93501 0.89035 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.42 37.15 0.35 -0.97 16 2 C 0.07 0.76 3.14 -27.89 -0.09 0.68 16 3 H 0.09 0.70 7.79 -51.93 -0.40 0.29 16 4 O -0.36 -4.28 9.52 -55.14 -0.52 -4.80 16 5 C 0.07 0.58 5.73 37.16 0.21 0.79 16 6 C -0.08 -0.65 5.72 -27.88 -0.16 -0.81 16 7 C -0.08 -0.63 5.13 -104.62 -0.54 -1.16 16 8 C -0.12 -0.81 9.70 -39.59 -0.38 -1.19 16 9 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 10 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 11 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 12 C -0.11 -0.86 9.70 -39.58 -0.38 -1.25 16 13 C 0.51 7.44 7.23 -10.99 -0.08 7.36 16 14 O -0.52 -10.01 16.07 -14.35 -0.23 -10.24 16 15 N -0.70 -9.16 5.46 -51.65 -0.28 -9.44 16 16 C 0.09 1.57 6.20 -65.69 -0.41 1.16 16 17 H 0.13 2.59 7.40 -51.93 -0.38 2.20 16 18 C -0.18 -3.10 6.91 -89.21 -0.62 -3.72 16 19 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 20 C 0.15 3.25 7.04 -2.41 -0.02 3.23 16 21 N -0.59 -15.25 3.38 -169.11 -0.57 -15.82 16 22 C -0.23 -6.36 10.36 -15.06 -0.16 -6.52 16 23 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 24 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 25 N -0.91 -26.89 10.84 55.49 0.60 -26.29 16 26 Si 0.91 21.88 29.56 -169.99 -5.03 16.86 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 C 0.18 4.47 5.71 -2.62 -0.01 4.46 16 31 C -0.18 -3.39 7.22 -87.19 -0.63 -4.02 16 32 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.45 7.56 -51.93 -0.39 0.05 16 36 H 0.05 0.37 7.87 -51.92 -0.41 -0.04 16 37 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 42 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.40 3.89 8.24 -40.82 -0.34 3.56 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.09 2.47 6.50 -51.93 -0.34 2.13 16 50 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 413.69 15.07 6.23 6.23 Total: -1.00 -34.18 413.69 -12.13 -46.31 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.13 Total: 2.97 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.20 Total: -5.78 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.25 Total: -51.55 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.76 Total: -15.04 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.18 -12.13 -46.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115185875.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.303 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds