Wall clock time and date at job start Wed Apr 1 2020 03:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47276 * 2 1 4 4 O 1.42905 * 109.47061 * 239.99862 * 2 1 3 5 5 C 1.35904 * 116.99889 * 84.95011 * 4 2 1 6 6 C 1.38728 * 120.05213 * 174.27758 * 5 4 2 7 7 C 1.38149 * 119.94127 * 179.74167 * 6 5 4 8 8 C 1.38269 * 120.05445 * 0.50586 * 7 6 5 9 9 C 1.38266 * 120.10886 * 359.76999 * 8 7 6 10 10 C 1.38139 * 120.05999 * 359.97438 * 9 8 7 11 11 C 1.50707 * 109.47460 * 119.99928 * 2 1 3 12 12 O 1.21278 * 119.99815 * 119.99976 * 11 2 1 13 13 N 1.34778 * 119.99760 * 299.99925 * 11 2 1 14 14 C 1.46496 * 119.99922 * 179.97438 * 13 11 2 15 15 C 1.53953 * 113.57877 * 252.72215 * 14 13 11 16 16 C 1.52905 * 86.78106 * 220.66071 * 15 14 13 17 17 C 1.52911 * 121.13806 * 150.61429 * 16 15 14 18 18 C 1.53953 * 86.78227 * 100.82420 * 17 16 15 19 19 N 1.46495 * 113.57882 * 139.34001 * 18 17 16 20 20 C 1.36936 * 120.00067 * 107.28004 * 19 18 17 21 21 H 1.08000 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00147 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00282 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99816 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46906 * 90.00124 * 24 22 20 26 26 H 1.48499 * 109.46974 * 210.00193 * 24 22 20 27 27 H 1.48499 * 109.47060 * 330.00128 * 24 22 20 28 28 C 1.52905 * 121.14100 * 259.17813 * 16 15 14 29 29 C 1.52906 * 88.04297 * 24.89917 * 16 15 14 30 30 H 1.09009 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47214 * 299.99573 * 1 2 3 32 32 H 1.08993 * 109.47344 * 60.00377 * 1 2 3 33 33 H 1.08001 * 120.03253 * 359.97438 * 6 5 4 34 34 H 1.07993 * 119.97538 * 180.27687 * 7 6 5 35 35 H 1.07997 * 119.94339 * 179.74464 * 8 7 6 36 36 H 1.08005 * 119.97032 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.03333 * 179.97438 * 10 9 8 38 38 H 0.96997 * 119.99750 * 0.02562 * 13 11 2 39 39 H 1.09001 * 112.82409 * 23.91250 * 14 13 11 40 40 H 1.08995 * 113.66391 * 335.13824 * 15 14 13 41 41 H 1.09001 * 113.65983 * 106.19258 * 15 14 13 42 42 H 1.08995 * 113.66495 * 215.30169 * 17 16 15 43 43 H 1.09001 * 113.65807 * 346.35441 * 17 16 15 44 44 H 1.08998 * 113.57765 * 270.13548 * 18 17 16 45 45 H 0.96999 * 119.99718 * 287.28155 * 19 18 17 46 46 H 0.97000 * 120.00120 * 180.02562 * 23 22 20 47 47 H 1.08999 * 113.66613 * 13.65226 * 28 16 15 48 48 H 1.09004 * 113.66242 * 144.61292 * 28 16 15 49 49 H 1.09005 * 113.66365 * 220.62964 * 29 16 15 50 50 H 1.09001 * 113.66739 * 89.57079 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1114 0.0623 -2.3045 6 6 2.6775 -0.4943 -3.4421 7 6 2.7784 0.2542 -4.5989 8 6 2.3253 1.5604 -4.6203 9 6 1.7659 2.1191 -3.4860 10 6 1.6580 1.3732 -2.3283 11 6 2.0324 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7068 -0.2499 2.4546 14 6 2.1947 -0.9407 3.6507 15 6 1.1020 -1.7292 4.3953 16 6 1.7363 -1.2184 5.6895 17 6 0.8974 -1.0023 6.9496 18 6 1.4550 -2.3485 7.4467 19 7 1.7996 -2.3501 8.8706 20 6 1.0142 -3.0277 9.7644 21 1 0.1404 -3.5607 9.4197 22 6 1.3405 -3.0288 11.1136 23 7 0.5858 -3.6806 11.9727 24 14 2.8515 -2.1063 11.7099 25 1 2.4754 -0.7121 12.0565 26 1 3.4029 -2.7835 12.9109 27 1 3.8771 -2.0900 10.6361 28 6 2.6614 -2.1074 6.5212 29 6 2.2843 -0.0345 4.8920 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 3.0356 -1.5131 -3.4247 34 1 3.2149 -0.1800 -5.4862 35 1 2.4088 2.1452 -5.5244 36 1 1.4131 3.1397 -3.5051 37 1 1.2214 1.8102 -1.4424 38 1 1.1489 0.5385 2.5435 39 1 3.1009 -1.5176 3.4658 40 1 0.0947 -1.3504 4.2226 41 1 1.1778 -2.8090 4.2676 42 1 1.2173 -0.1488 7.5471 43 1 -0.1772 -1.0145 6.7671 44 1 0.8475 -3.2058 7.1568 45 1 2.5842 -1.8710 9.1801 46 1 0.8136 -3.6810 12.9156 47 1 2.9961 -3.0024 5.9967 48 1 3.4781 -1.5647 6.9971 49 1 3.3044 0.2395 5.1609 50 1 1.6092 0.8207 4.8588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122140355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:47 Heat of formation + Delta-G solvation = 13.272653 kcal Electronic energy + Delta-G solvation = -28814.684147 eV Core-core repulsion = 24809.150301 eV Total energy + Delta-G solvation = -4005.533845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.12605 -40.47733 -39.28948 -37.66851 -36.02400 -34.00309 -32.89604 -31.85156 -31.15958 -30.18053 -29.95071 -25.89635 -25.57349 -25.33304 -24.13224 -23.31765 -22.78870 -21.86579 -20.65823 -20.18007 -18.87738 -18.15688 -17.59132 -17.27929 -16.76402 -16.25056 -16.13151 -15.76352 -15.35734 -15.03069 -14.85186 -14.73059 -14.38450 -14.04508 -13.91580 -13.62982 -13.59671 -13.11980 -12.89007 -12.68938 -12.68799 -12.50351 -12.32562 -12.30379 -12.01046 -11.86810 -11.71128 -11.53658 -11.25080 -11.15781 -11.09490 -10.77412 -10.29856 -10.21968 -9.98206 -9.89765 -9.69207 -9.48124 -9.44939 -9.22883 -8.89129 -8.64108 -7.26450 -5.78382 -3.13670 0.88239 0.99921 2.18139 2.27499 3.20005 3.34878 3.36359 3.39146 3.44360 4.08365 4.23308 4.35728 4.40361 4.44690 4.45593 4.54049 4.57746 4.65400 4.68622 4.77647 4.86517 4.93268 5.04200 5.11137 5.21526 5.23309 5.35404 5.45228 5.52445 5.56194 5.58648 5.61883 5.74089 5.79213 5.81984 5.85623 5.94665 5.95332 6.03451 6.09362 6.09820 6.21709 6.28909 6.29218 6.38300 6.53385 6.76883 6.92593 6.98826 7.17763 7.87348 7.98707 8.41519 9.19605 9.92311 10.12397 11.39940 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.001551 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.446860 B =18044.348472 C =18063.752016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 H 0.099 0.901 4 O -0.284 6.284 5 C 0.131 3.869 6 C -0.149 4.149 7 C -0.080 4.080 8 C -0.160 4.160 9 C -0.080 4.080 10 C -0.214 4.214 11 C 0.517 3.483 12 O -0.515 6.515 13 N -0.713 5.713 14 C 0.124 3.876 15 C -0.124 4.124 16 C -0.102 4.102 17 C -0.148 4.148 18 C 0.174 3.826 19 N -0.738 5.738 20 C -0.247 4.247 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.132 4.132 29 C -0.130 4.130 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.400 0.600 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.362 0.638 46 H 0.259 0.741 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 14.756 -33.251 36.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 H 0.117 0.883 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.168 4.168 7 C -0.098 4.098 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.301 3.699 12 O -0.389 6.389 13 N -0.366 5.366 14 C 0.020 3.980 15 C -0.162 4.162 16 C -0.103 4.103 17 C -0.189 4.189 18 C 0.063 3.937 19 N -0.377 5.377 20 C -0.377 4.377 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.581 5.581 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.171 4.171 29 C -0.168 4.168 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.235 0.765 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.195 0.805 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.751 13.636 -33.146 35.884 hybrid contribution 0.643 1.348 0.669 1.637 sum 2.394 14.985 -32.477 35.848 Atomic orbital electron populations 1.22353 0.92462 1.04725 1.03903 1.22229 0.95840 0.97040 0.84308 0.88341 1.86231 1.80918 1.36859 1.15669 1.19097 0.95254 0.90366 0.86705 1.20517 1.03414 1.01631 0.91250 1.21009 0.97678 0.93997 0.97102 1.21095 1.02098 0.95890 0.98784 1.20962 0.97144 0.99436 0.92287 1.21312 1.07282 0.94340 1.00284 1.20076 0.80667 0.84949 0.84183 1.90762 1.36528 1.25249 1.86341 1.45943 1.53556 1.32041 1.05051 1.22696 0.98702 0.95084 0.81541 1.23149 0.98239 1.00807 0.94021 1.22059 0.98982 0.96267 0.93008 1.23605 0.98613 1.01903 0.94746 1.21525 0.93717 0.95037 0.83433 1.42766 1.30742 1.61741 1.02493 1.19151 1.06144 1.24647 0.87778 0.89151 1.24690 0.98446 1.00106 0.95876 1.69702 1.39694 1.46437 1.02262 0.86552 0.83887 0.79867 0.78241 1.21105 1.21716 1.20310 1.23242 0.97966 0.98417 0.97511 1.23189 1.01909 0.97329 0.94368 0.90411 0.90142 0.90534 0.84965 0.85261 0.85877 0.85733 0.85286 0.76538 0.86680 0.89632 0.90707 0.90379 0.92224 0.89930 0.80508 0.93057 0.91671 0.90232 0.90801 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.07 37.15 0.34 -0.66 16 2 C 0.07 0.53 2.64 -27.88 -0.07 0.45 16 3 H 0.10 0.56 6.31 -51.93 -0.33 0.23 16 4 O -0.28 -3.09 9.33 -39.35 -0.37 -3.46 16 5 C 0.13 1.21 6.60 -39.22 -0.26 0.95 16 6 C -0.15 -1.28 9.99 -39.43 -0.39 -1.67 16 7 C -0.08 -0.53 10.04 -39.60 -0.40 -0.93 16 8 C -0.16 -0.98 10.04 -39.56 -0.40 -1.38 16 9 C -0.08 -0.50 10.04 -39.61 -0.40 -0.89 16 10 C -0.21 -1.52 8.24 -39.43 -0.33 -1.84 16 11 C 0.52 5.58 7.23 -10.98 -0.08 5.50 16 12 O -0.51 -8.07 16.10 -14.35 -0.23 -8.30 16 13 N -0.71 -5.99 5.25 -52.85 -0.28 -6.27 16 14 C 0.12 1.29 4.24 -66.95 -0.28 1.00 16 15 C -0.12 -1.39 7.64 -26.28 -0.20 -1.59 16 16 C -0.10 -1.29 1.11 -154.72 -0.17 -1.46 16 17 C -0.15 -2.30 7.64 -26.28 -0.20 -2.50 16 18 C 0.17 3.25 4.48 -66.95 -0.30 2.95 16 19 N -0.74 -17.26 5.20 -52.48 -0.27 -17.53 16 20 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 24 Si 0.88 22.00 27.74 -169.99 -4.71 17.28 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 28 C -0.13 -2.00 7.59 -26.29 -0.20 -2.20 16 29 C -0.13 -1.30 7.59 -26.29 -0.20 -1.50 16 30 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.08 0.28 7.56 -51.93 -0.39 -0.12 16 32 H 0.08 0.37 6.91 -51.93 -0.36 0.01 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.12 0.49 8.06 -52.48 -0.42 0.07 16 37 H 0.13 0.65 5.43 -52.49 -0.28 0.37 16 38 H 0.40 2.08 8.14 -40.82 -0.33 1.74 16 39 H 0.12 1.43 7.47 -51.93 -0.39 1.04 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 45 H 0.36 8.31 5.79 -40.82 -0.24 8.07 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -35.07 406.00 -10.59 -45.66 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.83 Total: 7.81 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -3.80 Total: -12.84 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.22 Total: -52.27 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.60 Total: -11.76 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.07 -10.59 -45.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122140355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.934 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds