Wall clock time and date at job start Wed Apr 1 2020 03:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47276 * 2 1 4 4 O 1.42905 * 109.47061 * 239.99862 * 2 1 3 5 5 C 1.35904 * 116.99889 * 84.95011 * 4 2 1 6 6 C 1.38728 * 120.05213 * 174.27758 * 5 4 2 7 7 C 1.38149 * 119.94127 * 179.74167 * 6 5 4 8 8 C 1.38269 * 120.05445 * 0.50586 * 7 6 5 9 9 C 1.38266 * 120.10886 * 359.76999 * 8 7 6 10 10 C 1.38139 * 120.05999 * 359.97438 * 9 8 7 11 11 C 1.50707 * 109.47460 * 119.99928 * 2 1 3 12 12 O 1.21278 * 119.99815 * 119.99976 * 11 2 1 13 13 N 1.34778 * 119.99760 * 299.99925 * 11 2 1 14 14 C 1.46496 * 119.99922 * 179.97438 * 13 11 2 15 15 C 1.53953 * 113.57877 * 252.72215 * 14 13 11 16 16 C 1.52905 * 86.78106 * 220.66071 * 15 14 13 17 17 C 1.52911 * 121.13806 * 150.61429 * 16 15 14 18 18 C 1.53953 * 86.78227 * 100.82420 * 17 16 15 19 19 N 1.46495 * 113.57882 * 139.34001 * 18 17 16 20 20 C 1.36936 * 120.00067 * 107.28004 * 19 18 17 21 21 H 1.08000 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00147 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00282 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99816 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46906 * 90.00124 * 24 22 20 26 26 H 1.48499 * 109.46974 * 210.00193 * 24 22 20 27 27 H 1.48499 * 109.47060 * 330.00128 * 24 22 20 28 28 C 1.52905 * 121.14100 * 259.17813 * 16 15 14 29 29 C 1.52906 * 88.04297 * 24.89917 * 16 15 14 30 30 H 1.09009 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47214 * 299.99573 * 1 2 3 32 32 H 1.08993 * 109.47344 * 60.00377 * 1 2 3 33 33 H 1.08001 * 120.03253 * 359.97438 * 6 5 4 34 34 H 1.07993 * 119.97538 * 180.27687 * 7 6 5 35 35 H 1.07997 * 119.94339 * 179.74464 * 8 7 6 36 36 H 1.08005 * 119.97032 * 179.97438 * 9 8 7 37 37 H 1.08002 * 120.03333 * 179.97438 * 10 9 8 38 38 H 0.96997 * 119.99750 * 0.02562 * 13 11 2 39 39 H 1.09001 * 112.82409 * 23.91250 * 14 13 11 40 40 H 1.08995 * 113.66391 * 335.13824 * 15 14 13 41 41 H 1.09001 * 113.65983 * 106.19258 * 15 14 13 42 42 H 1.08995 * 113.66495 * 215.30169 * 17 16 15 43 43 H 1.09001 * 113.65807 * 346.35441 * 17 16 15 44 44 H 1.08998 * 113.57765 * 270.13548 * 18 17 16 45 45 H 0.96999 * 119.99718 * 287.28155 * 19 18 17 46 46 H 0.97000 * 120.00120 * 180.02562 * 23 22 20 47 47 H 1.08999 * 113.66613 * 13.65226 * 28 16 15 48 48 H 1.09004 * 113.66242 * 144.61292 * 28 16 15 49 49 H 1.09005 * 113.66365 * 220.62964 * 29 16 15 50 50 H 1.09001 * 113.66739 * 89.57079 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1114 0.0623 -2.3045 6 6 2.6775 -0.4943 -3.4421 7 6 2.7784 0.2542 -4.5989 8 6 2.3253 1.5604 -4.6203 9 6 1.7659 2.1191 -3.4860 10 6 1.6580 1.3732 -2.3283 11 6 2.0324 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7068 -0.2499 2.4546 14 6 2.1947 -0.9407 3.6507 15 6 1.1020 -1.7292 4.3953 16 6 1.7363 -1.2184 5.6895 17 6 0.8974 -1.0023 6.9496 18 6 1.4550 -2.3485 7.4467 19 7 1.7996 -2.3501 8.8706 20 6 1.0142 -3.0277 9.7644 21 1 0.1404 -3.5607 9.4197 22 6 1.3405 -3.0288 11.1136 23 7 0.5858 -3.6806 11.9727 24 14 2.8515 -2.1063 11.7099 25 1 2.4754 -0.7121 12.0565 26 1 3.4029 -2.7835 12.9109 27 1 3.8771 -2.0900 10.6361 28 6 2.6614 -2.1074 6.5212 29 6 2.2843 -0.0345 4.8920 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 3.0356 -1.5131 -3.4247 34 1 3.2149 -0.1800 -5.4862 35 1 2.4088 2.1452 -5.5244 36 1 1.4131 3.1397 -3.5051 37 1 1.2214 1.8102 -1.4424 38 1 1.1489 0.5385 2.5435 39 1 3.1009 -1.5176 3.4658 40 1 0.0947 -1.3504 4.2226 41 1 1.1778 -2.8090 4.2676 42 1 1.2173 -0.1488 7.5471 43 1 -0.1772 -1.0145 6.7671 44 1 0.8475 -3.2058 7.1568 45 1 2.5842 -1.8710 9.1801 46 1 0.8136 -3.6810 12.9156 47 1 2.9961 -3.0024 5.9967 48 1 3.4781 -1.5647 6.9971 49 1 3.3044 0.2395 5.1609 50 1 1.6092 0.8207 4.8588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122140355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:46 Heat of formation + Delta-G solvation = -8.623115 kcal Electronic energy + Delta-G solvation = -28815.633618 eV Core-core repulsion = 24809.150301 eV Total energy + Delta-G solvation = -4006.483317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.91489 -41.33791 -40.14304 -38.29669 -37.30394 -35.37881 -34.15324 -32.88544 -31.95351 -31.52887 -30.54447 -26.78438 -26.69203 -26.29243 -25.63702 -24.13367 -23.50610 -22.79075 -21.59991 -21.39544 -19.82034 -19.43999 -18.74877 -18.30064 -17.52811 -16.99119 -16.82558 -16.72841 -16.44779 -16.15539 -15.86647 -15.64490 -15.37863 -15.20596 -14.95076 -14.65305 -14.38876 -14.10506 -13.76569 -13.72219 -13.61201 -13.56099 -13.37633 -13.29929 -12.99059 -12.89105 -12.84823 -12.44910 -12.41510 -12.21133 -12.08976 -12.01643 -11.86581 -11.75232 -11.45979 -11.06910 -10.95171 -10.84435 -10.70286 -10.08159 -9.94571 -9.26018 -9.19167 -8.02345 -5.35052 0.39260 0.47523 1.37744 1.41432 1.41882 1.48847 1.58057 2.48702 2.55801 2.84731 3.27738 3.43908 3.47756 3.49384 3.66678 3.70283 3.78150 3.85048 3.90693 3.93666 4.00593 4.08468 4.29226 4.29640 4.39669 4.46213 4.51740 4.58683 4.62622 4.66229 4.76827 4.79701 4.82191 4.94006 4.97399 5.03206 5.08213 5.08844 5.10321 5.13025 5.26251 5.35094 5.47223 5.48363 5.57673 5.61369 5.62462 5.78661 5.84249 6.23155 6.34677 6.51811 7.08447 7.14160 7.86172 8.05533 9.19362 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.040022 B = 0.001551 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.446860 B =18044.348472 C =18063.752016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 H 0.127 0.873 4 O -0.318 6.318 5 C 0.107 3.893 6 C -0.176 4.176 7 C -0.084 4.084 8 C -0.163 4.163 9 C -0.083 4.083 10 C -0.215 4.215 11 C 0.514 3.486 12 O -0.574 6.574 13 N -0.694 5.694 14 C 0.128 3.872 15 C -0.123 4.123 16 C -0.091 4.091 17 C -0.136 4.136 18 C 0.147 3.853 19 N -0.743 5.743 20 C -0.235 4.235 21 H 0.054 0.946 22 C -0.066 4.066 23 N -0.985 5.985 24 Si 0.957 3.043 25 H -0.276 1.276 26 H -0.297 1.297 27 H -0.252 1.252 28 C -0.125 4.125 29 C -0.111 4.111 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.420 0.580 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.366 0.634 46 H 0.257 0.743 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 18.806 -35.280 40.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.008 3.992 3 H 0.144 0.856 4 O -0.232 6.232 5 C 0.062 3.938 6 C -0.195 4.195 7 C -0.102 4.102 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.233 4.233 11 C 0.300 3.700 12 O -0.452 6.452 13 N -0.347 5.347 14 C 0.023 3.977 15 C -0.161 4.161 16 C -0.092 4.092 17 C -0.176 4.176 18 C 0.038 3.962 19 N -0.384 5.384 20 C -0.366 4.366 21 H 0.072 0.928 22 C -0.257 4.257 23 N -0.636 5.636 24 Si 0.784 3.216 25 H -0.202 1.202 26 H -0.224 1.224 27 H -0.177 1.177 28 C -0.164 4.164 29 C -0.149 4.149 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.259 0.741 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.200 0.800 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.224 17.750 -35.244 39.524 hybrid contribution 0.406 0.028 1.179 1.247 sum 2.631 17.778 -34.065 38.515 Atomic orbital electron populations 1.22367 0.90500 1.04106 1.05892 1.22384 0.97136 0.97439 0.82259 0.85582 1.86182 1.81689 1.38497 1.16783 1.19343 0.96635 0.91455 0.86359 1.20698 1.04641 1.01788 0.92363 1.21276 0.97498 0.94425 0.97027 1.21467 1.01153 0.95671 0.99840 1.21359 0.96371 1.00561 0.91786 1.21563 1.06825 0.93386 1.01567 1.20674 0.79633 0.84232 0.85469 1.90739 1.39290 1.27956 1.87200 1.45730 1.53000 1.32155 1.03825 1.22424 0.97542 0.95215 0.82523 1.23204 0.99471 1.00174 0.93295 1.21877 0.97535 0.97446 0.92377 1.23396 0.99159 0.99248 0.95837 1.21912 0.96253 0.96450 0.81607 1.42751 1.30410 1.61557 1.03715 1.19119 1.05227 1.23497 0.88726 0.92759 1.25535 1.02238 1.01887 0.96047 1.69892 1.42227 1.48981 1.02485 0.85374 0.80120 0.78308 0.77752 1.20191 1.22431 1.17679 1.23135 0.97086 0.99271 0.96857 1.23147 1.02817 0.96819 0.92155 0.92345 0.87253 0.89369 0.86035 0.83475 0.83543 0.83038 0.83168 0.74119 0.88898 0.87819 0.92320 0.90342 0.91958 0.91753 0.79997 0.93401 0.91638 0.89613 0.90132 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.07 71.98 0.65 -0.87 16 2 C 0.07 0.97 2.64 29.85 0.08 1.05 16 3 H 0.13 1.05 6.31 -2.39 -0.02 1.04 16 4 O -0.32 -6.98 9.33 -73.44 -0.69 -7.67 16 5 C 0.11 1.94 6.60 22.51 0.15 2.09 16 6 C -0.18 -3.11 9.99 22.37 0.22 -2.88 16 7 C -0.08 -1.05 10.04 22.26 0.22 -0.83 16 8 C -0.16 -1.61 10.04 22.28 0.22 -1.39 16 9 C -0.08 -0.78 10.04 22.25 0.22 -0.56 16 10 C -0.22 -2.57 8.24 22.36 0.18 -2.39 16 11 C 0.51 10.55 7.23 87.66 0.63 11.19 16 12 O -0.57 -18.45 16.10 16.01 0.26 -18.19 16 13 N -0.69 -9.80 5.25 -439.52 -2.31 -12.11 16 14 C 0.13 2.39 4.24 45.63 0.19 2.58 16 15 C -0.12 -2.55 7.64 30.88 0.24 -2.31 16 16 C -0.09 -2.09 1.11 -52.32 -0.06 -2.15 16 17 C -0.14 -3.98 7.64 30.89 0.24 -3.74 16 18 C 0.15 5.44 4.48 45.63 0.20 5.65 16 19 N -0.74 -34.60 5.20 -319.93 -1.67 -36.27 16 20 C -0.23 -13.50 10.45 84.03 0.88 -12.62 16 21 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 22 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 23 N -0.99 -63.72 13.97 21.65 0.30 -63.42 16 24 Si 0.96 45.55 27.74 68.60 1.90 47.46 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 28 C -0.12 -3.61 7.59 30.88 0.23 -3.38 16 29 C -0.11 -1.80 7.59 30.88 0.23 -1.57 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.11 0.30 7.56 -2.39 -0.02 0.28 16 32 H 0.09 0.61 6.91 -2.39 -0.02 0.59 16 33 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.15 0.71 8.06 -2.91 -0.02 0.68 16 36 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.15 0.99 5.43 -2.91 -0.02 0.98 16 38 H 0.42 2.53 8.14 -92.71 -0.75 1.78 16 39 H 0.09 2.24 7.47 -2.39 -0.02 2.23 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 2.58 8.10 -2.39 -0.02 2.57 16 45 H 0.37 16.24 5.79 -92.71 -0.54 15.71 16 46 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 47 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.09 2.40 8.12 -2.38 -0.02 2.38 16 49 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.11 1.28 8.12 -2.39 -0.02 1.26 16 Total: -1.00 -81.31 406.00 2.63 -78.68 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.39 Total: 27.11 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.22 Total: -15.59 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.67 Total: -111.79 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.43 Total: -25.86 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.46 kcal Total: -81.31 2.63 -78.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122140355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.056 kcal (2) G-P(sol) polarization free energy of solvation -81.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds