Wall clock time and date at job start Wed Apr 1 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47474 * 2 1 4 4 O 1.42897 * 109.47195 * 239.99989 * 2 1 3 5 5 C 1.42898 * 114.00326 * 89.99844 * 4 2 1 6 6 C 1.50696 * 109.47640 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.00226 * 269.73328 * 6 5 4 8 8 C 1.38242 * 120.00278 * 179.76409 * 7 6 5 9 9 C 1.38234 * 119.99670 * 0.50180 * 8 7 6 10 10 C 1.38241 * 120.00186 * 359.74929 * 9 8 7 11 11 C 1.38234 * 119.99859 * 89.99918 * 6 5 4 12 12 C 1.50702 * 109.46965 * 120.00002 * 2 1 3 13 13 O 1.21274 * 119.99833 * 113.45174 * 12 2 1 14 14 N 1.34775 * 120.00057 * 293.44704 * 12 2 1 15 15 C 1.47386 * 135.85531 * 184.25084 * 14 12 2 16 16 C 1.52070 * 87.41074 * 154.39188 * 15 14 12 17 17 C 1.47396 * 135.85209 * 4.62477 * 14 12 2 18 18 C 1.53516 * 117.21248 * 267.28028 * 16 15 14 19 19 C 1.54631 * 102.70215 * 262.92940 * 18 16 15 20 20 N 1.47141 * 107.37976 * 339.38715 * 19 18 16 21 21 C 1.36939 * 125.58221 * 179.04416 * 20 19 18 22 22 H 1.07996 * 120.00140 * 174.95854 * 21 20 19 23 23 C 1.38819 * 119.99711 * 354.95194 * 21 20 19 24 24 N 1.31618 * 120.00021 * 5.69791 * 23 21 20 25 25 Si 1.86797 * 119.99863 * 185.69214 * 23 21 20 26 26 H 1.48504 * 109.46847 * 94.99980 * 25 23 21 27 27 H 1.48491 * 109.47290 * 214.99728 * 25 23 21 28 28 H 1.48502 * 109.47261 * 335.00339 * 25 23 21 29 29 C 1.47756 * 108.83872 * 359.08522 * 20 19 18 30 30 H 1.09004 * 109.46891 * 305.12854 * 1 2 3 31 31 H 1.09002 * 109.47007 * 65.12376 * 1 2 3 32 32 H 1.08998 * 109.47479 * 185.12650 * 1 2 3 33 33 H 1.09007 * 109.46934 * 60.00433 * 5 4 2 34 34 H 1.08996 * 109.47146 * 300.00724 * 5 4 2 35 35 H 1.08007 * 120.00373 * 359.97438 * 7 6 5 36 36 H 1.08002 * 120.00270 * 180.23052 * 8 7 6 37 37 H 1.07998 * 120.00293 * 179.72409 * 9 8 7 38 38 H 1.07992 * 120.00258 * 179.97438 * 10 9 8 39 39 H 1.08004 * 120.00120 * 0.02562 * 11 6 5 40 40 H 1.09003 * 113.54548 * 269.00590 * 15 14 12 41 41 H 1.09007 * 113.54251 * 39.67980 * 15 14 12 42 42 H 1.09000 * 113.54286 * 320.32329 * 17 14 12 43 43 H 1.09007 * 113.54069 * 90.92726 * 17 14 12 44 44 H 1.08997 * 110.76248 * 21.23314 * 18 16 15 45 45 H 1.08994 * 110.76333 * 144.62912 * 18 16 15 46 46 H 1.09009 * 109.86104 * 98.83666 * 19 18 16 47 47 H 1.08997 * 109.86556 * 219.92896 * 19 18 16 48 48 H 0.97004 * 119.99990 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.40581 * 263.50139 * 29 20 19 50 50 H 1.09002 * 110.40146 * 141.08291 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7002 -0.6284 -3.4614 7 6 4.0586 -0.7968 -3.6546 8 6 4.5173 -1.5451 -4.7227 9 6 3.6178 -2.1163 -5.6033 10 6 2.2595 -1.9436 -5.4130 11 6 1.8008 -1.1997 -4.3420 12 6 2.0323 -0.7104 1.2305 13 8 2.6285 -1.7610 1.1232 14 7 1.8190 -0.1782 2.4502 15 6 2.2050 -0.5133 3.8326 16 6 2.0494 0.9634 4.1607 17 6 1.0928 0.9887 2.9827 18 6 3.3045 1.8414 4.0583 19 6 3.7999 1.8985 5.5220 20 7 2.6584 1.5581 6.3859 21 6 2.6892 1.4795 7.7527 22 1 1.7777 1.3014 8.3040 23 6 3.8919 1.6288 8.4296 24 7 4.9823 1.9566 7.7694 25 14 3.9627 1.3644 10.2774 26 1 4.3833 -0.0311 10.5620 27 1 4.9412 2.3079 10.8753 28 1 2.6200 1.6061 10.8639 29 6 1.4738 1.3140 5.5372 30 1 -0.3633 0.5914 0.8405 31 1 -0.3633 0.4323 -0.9323 32 1 -0.3634 -1.0235 0.0918 33 1 2.9320 0.9513 -2.0450 34 1 1.2538 0.6546 -2.5588 35 1 4.7615 -0.3466 -2.9693 36 1 5.5785 -1.6797 -4.8715 37 1 3.9762 -2.6972 -6.4403 38 1 1.5569 -2.3895 -6.1012 39 1 0.7396 -1.0642 -4.1937 40 1 1.4839 -1.1513 4.3435 41 1 3.2292 -0.8755 3.9230 42 1 1.1881 1.8806 2.3634 43 1 0.0597 0.7716 3.2544 44 1 4.0510 1.3749 3.4156 45 1 3.0505 2.8380 3.6972 46 1 4.6039 1.1773 5.6693 47 1 4.1538 2.9029 5.7544 48 1 5.8227 2.0612 8.2425 49 1 0.8594 2.2122 5.4747 50 1 0.8910 0.4804 5.9290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147877303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:06 Heat of formation + Delta-G solvation = 17.623908 kcal Electronic energy + Delta-G solvation = -29578.949313 eV Core-core repulsion = 25573.604153 eV Total energy + Delta-G solvation = -4005.345160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.77036 -39.70836 -38.79917 -37.28350 -35.66751 -32.91795 -32.20992 -31.19331 -31.16448 -29.39165 -28.62880 -26.50758 -26.14280 -25.80848 -24.14890 -23.18523 -22.85366 -21.62600 -20.34369 -19.42148 -18.38268 -17.56810 -17.06467 -16.82976 -16.65655 -16.07916 -15.67488 -15.48932 -15.35854 -14.77783 -14.65298 -14.49027 -13.83403 -13.78130 -13.72188 -13.59915 -13.21518 -13.08137 -12.78544 -12.62330 -12.41982 -12.34632 -12.19719 -11.97522 -11.84052 -11.62860 -11.31759 -11.18935 -11.03216 -10.93270 -10.68368 -10.45899 -10.23056 -10.11961 -10.05285 -9.86123 -9.69171 -9.40774 -9.18663 -9.10812 -8.60155 -8.56241 -6.85936 -5.74246 -3.07297 0.96589 1.13545 2.59115 2.69029 3.36757 3.39421 3.44661 3.46671 3.83951 4.28968 4.44031 4.49998 4.54618 4.60769 4.68378 4.72365 4.77674 4.85162 4.94122 4.98286 5.02039 5.22492 5.23705 5.32139 5.35156 5.37419 5.43087 5.49341 5.51933 5.63713 5.67475 5.75648 5.78331 5.81375 5.83572 5.98280 6.15675 6.16745 6.17634 6.22454 6.30910 6.43512 6.48095 6.62866 6.66220 6.69644 6.84085 7.52002 7.60708 7.80237 7.82251 8.22767 8.24367 9.19058 9.79387 10.44881 11.37566 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.001887 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.344625 B =14835.509390 C =15354.281456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.077 3.923 3 H 0.085 0.915 4 O -0.350 6.350 5 C 0.100 3.900 6 C -0.088 4.088 7 C -0.095 4.095 8 C -0.123 4.123 9 C -0.115 4.115 10 C -0.125 4.125 11 C -0.098 4.098 12 C 0.541 3.459 13 O -0.524 6.524 14 N -0.643 5.643 15 C 0.130 3.870 16 C -0.105 4.105 17 C 0.111 3.889 18 C -0.117 4.117 19 C 0.178 3.822 20 N -0.604 5.604 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.154 3.846 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.041 0.959 48 H 0.252 0.748 49 H 0.026 0.974 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.505 -1.400 -25.007 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 H 0.103 0.897 4 O -0.269 6.269 5 C 0.023 3.977 6 C -0.089 4.089 7 C -0.113 4.113 8 C -0.141 4.141 9 C -0.133 4.133 10 C -0.143 4.143 11 C -0.116 4.116 12 C 0.329 3.671 13 O -0.399 6.399 14 N -0.380 5.380 15 C 0.008 3.992 16 C -0.107 4.107 17 C -0.012 4.012 18 C -0.156 4.156 19 C 0.054 3.946 20 N -0.331 5.331 21 C -0.358 4.358 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.027 3.973 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.044 0.956 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.929 -2.245 -25.130 26.447 hybrid contribution 0.027 0.129 0.977 0.986 sum -7.902 -2.116 -24.153 25.500 Atomic orbital electron populations 1.22213 0.93523 1.03752 1.03109 1.21797 0.95070 0.96236 0.85324 0.89699 1.88132 1.86547 1.33742 1.18440 1.21431 0.99726 0.91761 0.84752 1.19549 0.93725 1.00024 0.95559 1.21124 0.94969 0.97948 0.97275 1.21172 0.99882 0.97939 0.95140 1.21209 0.93459 0.99366 0.99291 1.21141 0.95785 0.99300 0.98120 1.21059 0.99438 0.96658 0.94449 1.19802 0.79948 0.84847 0.82519 1.90726 1.41540 1.22122 1.85538 1.49784 1.53201 1.29843 1.05202 1.22803 1.01851 0.96545 0.78004 1.22191 0.97372 0.95392 0.95700 1.22898 0.96852 0.88200 0.93274 1.22469 0.94835 0.97509 1.00761 1.21233 0.90004 1.00139 0.83256 1.44530 1.04970 1.81683 1.01908 1.19044 0.93844 1.42693 0.80213 0.90359 1.24826 0.95601 1.01741 0.98156 1.69966 0.99373 1.53248 1.34095 0.86122 0.77251 0.77610 0.84917 1.21622 1.21795 1.20629 1.21144 0.91027 0.97612 0.87530 0.90736 0.91267 0.91221 0.92148 0.92200 0.85789 0.85829 0.86030 0.85932 0.85952 0.89701 0.90142 0.90498 0.89452 0.92046 0.91840 0.93232 0.94049 0.93724 0.95617 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.42 37.16 0.35 -1.15 16 2 C 0.08 0.90 2.97 -27.88 -0.08 0.82 16 3 H 0.09 0.81 7.79 -51.93 -0.40 0.41 16 4 O -0.35 -4.65 9.51 -55.06 -0.52 -5.17 16 5 C 0.10 0.96 5.87 36.00 0.21 1.17 16 6 C -0.09 -0.91 5.51 -104.63 -0.58 -1.48 16 7 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 8 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 9 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 10 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 11 C -0.10 -0.89 9.70 -39.58 -0.38 -1.28 16 12 C 0.54 8.51 7.41 -10.99 -0.08 8.43 16 13 O -0.52 -10.71 17.29 -14.26 -0.25 -10.95 16 14 N -0.64 -9.24 3.69 -185.74 -0.68 -9.93 16 15 C 0.13 2.07 7.98 -7.34 -0.06 2.01 16 16 C -0.10 -1.63 1.06 -155.22 -0.16 -1.80 16 17 C 0.11 1.30 6.58 -7.48 -0.05 1.25 16 18 C -0.12 -2.05 6.41 -25.61 -0.16 -2.21 16 19 C 0.18 4.14 5.40 -2.83 -0.02 4.13 16 20 N -0.60 -14.60 3.41 -170.53 -0.58 -15.18 16 21 C -0.23 -6.18 10.27 -15.06 -0.15 -6.34 16 22 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 24 N -0.92 -26.58 10.33 55.49 0.57 -26.00 16 25 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 C 0.15 2.84 6.70 -3.22 -0.02 2.82 16 30 H 0.07 0.57 6.93 -51.93 -0.36 0.21 16 31 H 0.07 0.48 7.78 -51.93 -0.40 0.08 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 34 H 0.06 0.44 7.72 -51.93 -0.40 0.04 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 40 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 43 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.05 1.30 7.26 -51.92 -0.38 0.93 16 47 H 0.04 1.07 7.62 -51.93 -0.40 0.67 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -34.20 408.27 -11.41 -45.61 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.21 Total: -1.75 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.86 Total: 0.49 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.69 Total: -51.11 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.77 Total: -16.12 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.20 -11.41 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147877303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.233 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds