Wall clock time and date at job start Wed Apr 1 2020 03:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47474 * 2 1 4 4 O 1.42897 * 109.47195 * 239.99989 * 2 1 3 5 5 C 1.42898 * 114.00326 * 89.99844 * 4 2 1 6 6 C 1.50696 * 109.47640 * 180.02562 * 5 4 2 7 7 C 1.38229 * 120.00226 * 269.73328 * 6 5 4 8 8 C 1.38242 * 120.00278 * 179.76409 * 7 6 5 9 9 C 1.38234 * 119.99670 * 0.50180 * 8 7 6 10 10 C 1.38241 * 120.00186 * 359.74929 * 9 8 7 11 11 C 1.38234 * 119.99859 * 89.99918 * 6 5 4 12 12 C 1.50702 * 109.46965 * 120.00002 * 2 1 3 13 13 O 1.21274 * 119.99833 * 113.45174 * 12 2 1 14 14 N 1.34775 * 120.00057 * 293.44704 * 12 2 1 15 15 C 1.47386 * 135.85531 * 184.25084 * 14 12 2 16 16 C 1.52070 * 87.41074 * 154.39188 * 15 14 12 17 17 C 1.47396 * 135.85209 * 4.62477 * 14 12 2 18 18 C 1.53516 * 117.21248 * 267.28028 * 16 15 14 19 19 C 1.54631 * 102.70215 * 262.92940 * 18 16 15 20 20 N 1.47141 * 107.37976 * 339.38715 * 19 18 16 21 21 C 1.36939 * 125.58221 * 179.04416 * 20 19 18 22 22 H 1.07996 * 120.00140 * 174.95854 * 21 20 19 23 23 C 1.38819 * 119.99711 * 354.95194 * 21 20 19 24 24 N 1.31618 * 120.00021 * 5.69791 * 23 21 20 25 25 Si 1.86797 * 119.99863 * 185.69214 * 23 21 20 26 26 H 1.48504 * 109.46847 * 94.99980 * 25 23 21 27 27 H 1.48491 * 109.47290 * 214.99728 * 25 23 21 28 28 H 1.48502 * 109.47261 * 335.00339 * 25 23 21 29 29 C 1.47756 * 108.83872 * 359.08522 * 20 19 18 30 30 H 1.09004 * 109.46891 * 305.12854 * 1 2 3 31 31 H 1.09002 * 109.47007 * 65.12376 * 1 2 3 32 32 H 1.08998 * 109.47479 * 185.12650 * 1 2 3 33 33 H 1.09007 * 109.46934 * 60.00433 * 5 4 2 34 34 H 1.08996 * 109.47146 * 300.00724 * 5 4 2 35 35 H 1.08007 * 120.00373 * 359.97438 * 7 6 5 36 36 H 1.08002 * 120.00270 * 180.23052 * 8 7 6 37 37 H 1.07998 * 120.00293 * 179.72409 * 9 8 7 38 38 H 1.07992 * 120.00258 * 179.97438 * 10 9 8 39 39 H 1.08004 * 120.00120 * 0.02562 * 11 6 5 40 40 H 1.09003 * 113.54548 * 269.00590 * 15 14 12 41 41 H 1.09007 * 113.54251 * 39.67980 * 15 14 12 42 42 H 1.09000 * 113.54286 * 320.32329 * 17 14 12 43 43 H 1.09007 * 113.54069 * 90.92726 * 17 14 12 44 44 H 1.08997 * 110.76248 * 21.23314 * 18 16 15 45 45 H 1.08994 * 110.76333 * 144.62912 * 18 16 15 46 46 H 1.09009 * 109.86104 * 98.83666 * 19 18 16 47 47 H 1.08997 * 109.86556 * 219.92896 * 19 18 16 48 48 H 0.97004 * 119.99990 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.40581 * 263.50139 * 29 20 19 50 50 H 1.09002 * 110.40146 * 141.08291 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7002 -0.6284 -3.4614 7 6 4.0586 -0.7968 -3.6546 8 6 4.5173 -1.5451 -4.7227 9 6 3.6178 -2.1163 -5.6033 10 6 2.2595 -1.9436 -5.4130 11 6 1.8008 -1.1997 -4.3420 12 6 2.0323 -0.7104 1.2305 13 8 2.6285 -1.7610 1.1232 14 7 1.8190 -0.1782 2.4502 15 6 2.2050 -0.5133 3.8326 16 6 2.0494 0.9634 4.1607 17 6 1.0928 0.9887 2.9827 18 6 3.3045 1.8414 4.0583 19 6 3.7999 1.8985 5.5220 20 7 2.6584 1.5581 6.3859 21 6 2.6892 1.4795 7.7527 22 1 1.7777 1.3014 8.3040 23 6 3.8919 1.6288 8.4296 24 7 4.9823 1.9566 7.7694 25 14 3.9627 1.3644 10.2774 26 1 4.3833 -0.0311 10.5620 27 1 4.9412 2.3079 10.8753 28 1 2.6200 1.6061 10.8639 29 6 1.4738 1.3140 5.5372 30 1 -0.3633 0.5914 0.8405 31 1 -0.3633 0.4323 -0.9323 32 1 -0.3634 -1.0235 0.0918 33 1 2.9320 0.9513 -2.0450 34 1 1.2538 0.6546 -2.5588 35 1 4.7615 -0.3466 -2.9693 36 1 5.5785 -1.6797 -4.8715 37 1 3.9762 -2.6972 -6.4403 38 1 1.5569 -2.3895 -6.1012 39 1 0.7396 -1.0642 -4.1937 40 1 1.4839 -1.1513 4.3435 41 1 3.2292 -0.8755 3.9230 42 1 1.1881 1.8806 2.3634 43 1 0.0597 0.7716 3.2544 44 1 4.0510 1.3749 3.4156 45 1 3.0505 2.8380 3.6972 46 1 4.6039 1.1773 5.6693 47 1 4.1538 2.9029 5.7544 48 1 5.8227 2.0612 8.2425 49 1 0.8594 2.2122 5.4747 50 1 0.8910 0.4804 5.9290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147877303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:05 Heat of formation + Delta-G solvation = -2.283579 kcal Electronic energy + Delta-G solvation = -29579.812566 eV Core-core repulsion = 25573.604153 eV Total energy + Delta-G solvation = -4006.208414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.98527 -40.47348 -39.82919 -38.33471 -37.28146 -34.18761 -33.52824 -32.10109 -31.80642 -31.01429 -30.04470 -27.55454 -27.15979 -27.11684 -25.68122 -24.29347 -23.49385 -22.28064 -22.14156 -20.59881 -19.72039 -18.60363 -18.42195 -17.98780 -17.57531 -17.02903 -16.77868 -16.59447 -16.48761 -16.21904 -15.84098 -15.57998 -15.47715 -14.82499 -14.59616 -14.30150 -14.22482 -14.06149 -13.86457 -13.76649 -13.65928 -13.38420 -13.36884 -13.22839 -12.99572 -12.86625 -12.79785 -12.44314 -12.23831 -12.00637 -11.93932 -11.91407 -11.83960 -11.79324 -11.67328 -11.20151 -10.99809 -10.66313 -10.50033 -9.83810 -9.78167 -9.75611 -8.84135 -7.82844 -5.16307 0.30166 0.48383 1.47145 1.49062 1.50572 1.57367 1.58405 2.51611 2.61155 3.09049 3.26849 3.37385 3.43008 3.61296 3.83079 3.83892 3.87905 3.97167 4.07431 4.10475 4.13714 4.21653 4.27158 4.33811 4.35765 4.38543 4.56522 4.60293 4.62484 4.70574 4.71900 4.72598 4.75004 4.84033 4.88015 4.97114 5.05159 5.05940 5.13577 5.19299 5.19648 5.24887 5.51007 5.52892 5.59212 5.64607 5.69324 5.80451 6.05239 6.10328 6.22971 6.69874 7.07329 7.13332 7.81964 8.45890 9.27978 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.001887 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.344625 B =14835.509390 C =15354.281456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.081 3.919 3 H 0.113 0.887 4 O -0.384 6.384 5 C 0.098 3.902 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.135 4.135 9 C -0.121 4.121 10 C -0.131 4.131 11 C -0.109 4.109 12 C 0.532 3.468 13 O -0.586 6.586 14 N -0.640 5.640 15 C 0.120 3.880 16 C -0.098 4.098 17 C 0.129 3.871 18 C -0.101 4.101 19 C 0.186 3.814 20 N -0.627 5.627 21 C -0.234 4.234 22 H 0.088 0.912 23 C -0.070 4.070 24 N -0.953 5.953 25 Si 0.973 3.027 26 H -0.293 1.293 27 H -0.298 1.298 28 H -0.263 1.263 29 C 0.151 3.849 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.003 0.997 47 H 0.006 0.994 48 H 0.244 0.756 49 H 0.049 0.951 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 -0.417 -26.855 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.131 0.869 4 O -0.303 6.303 5 C 0.022 3.978 6 C -0.110 4.110 7 C -0.137 4.137 8 C -0.153 4.153 9 C -0.139 4.139 10 C -0.149 4.149 11 C -0.126 4.126 12 C 0.323 3.677 13 O -0.466 6.466 14 N -0.375 5.375 15 C -0.003 4.003 16 C -0.100 4.100 17 C 0.008 3.992 18 C -0.139 4.139 19 C 0.061 3.939 20 N -0.354 5.354 21 C -0.363 4.363 22 H 0.106 0.894 23 C -0.263 4.263 24 N -0.602 5.602 25 Si 0.802 3.198 26 H -0.220 1.220 27 H -0.225 1.225 28 H -0.188 1.188 29 C 0.026 3.974 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.021 0.979 47 H 0.024 0.976 48 H 0.053 0.947 49 H 0.067 0.933 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.305 -1.231 -26.989 29.287 hybrid contribution 1.065 -0.219 1.534 1.881 sum -10.239 -1.450 -25.455 27.475 Atomic orbital electron populations 1.22216 0.90956 1.03333 1.05374 1.21911 0.96755 0.96345 0.82904 0.86933 1.88095 1.87005 1.35655 1.19590 1.21607 1.01276 0.91379 0.83522 1.19798 0.93988 1.00870 0.96301 1.21310 0.95372 0.98943 0.98035 1.21444 1.00987 0.97817 0.95062 1.21555 0.93553 0.99134 0.99677 1.21504 0.96362 0.98824 0.98204 1.21342 1.00189 0.96604 0.94512 1.20743 0.78827 0.84347 0.83785 1.90693 1.44369 1.25054 1.86450 1.49800 1.53005 1.30405 1.04294 1.22824 1.00438 0.97169 0.79882 1.22017 0.97452 0.94443 0.96101 1.23049 0.96941 0.88376 0.90851 1.22264 0.95683 0.99642 0.96322 1.20929 0.89331 0.96570 0.87077 1.44839 1.07099 1.81616 1.01819 1.19485 0.94000 1.40786 0.82020 0.89437 1.25649 0.95619 1.02709 1.02329 1.70200 0.99576 1.55120 1.35324 0.85120 0.77631 0.76760 0.80239 1.22018 1.22529 1.18766 1.21367 0.89403 0.98742 0.87877 0.88645 0.88776 0.92983 0.91497 0.89510 0.86115 0.84476 0.83780 0.83622 0.84383 0.88622 0.93541 0.86858 0.86003 0.92221 0.88979 0.97900 0.97622 0.94685 0.93300 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.42 71.98 0.68 -1.54 16 2 C 0.08 1.68 2.97 29.85 0.09 1.77 16 3 H 0.11 1.67 7.79 -2.39 -0.02 1.65 16 4 O -0.38 -9.70 9.51 -130.02 -1.24 -10.94 16 5 C 0.10 1.71 5.87 71.23 0.42 2.12 16 6 C -0.11 -2.16 5.51 -19.87 -0.11 -2.26 16 7 C -0.12 -2.40 9.70 22.27 0.22 -2.18 16 8 C -0.14 -2.33 10.05 22.27 0.22 -2.11 16 9 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 10 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 11 C -0.11 -1.82 9.70 22.27 0.22 -1.60 16 12 C 0.53 16.15 7.41 87.66 0.65 16.80 16 13 O -0.59 -24.58 17.29 15.94 0.28 -24.30 16 14 N -0.64 -16.94 3.69 -859.95 -3.17 -20.11 16 15 C 0.12 3.73 7.98 83.76 0.67 4.40 16 16 C -0.10 -2.83 1.06 -52.62 -0.06 -2.89 16 17 C 0.13 2.37 6.58 83.66 0.55 2.93 16 18 C -0.10 -3.41 6.41 31.32 0.20 -3.21 16 19 C 0.19 8.95 5.40 86.81 0.47 9.42 16 20 N -0.63 -30.40 3.41 -693.44 -2.36 -32.77 16 21 C -0.23 -12.65 10.27 84.03 0.86 -11.79 16 22 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 23 C -0.07 -3.98 5.48 84.86 0.47 -3.52 16 24 N -0.95 -57.66 10.33 21.65 0.22 -57.43 16 25 Si 0.97 45.63 29.56 68.60 2.03 47.65 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 28 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.15 5.22 6.70 86.23 0.58 5.80 16 30 H 0.09 0.90 6.93 -2.39 -0.02 0.88 16 31 H 0.09 0.85 7.78 -2.39 -0.02 0.83 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 1.03 8.03 -2.38 -0.02 1.01 16 34 H 0.09 0.99 7.72 -2.39 -0.02 0.98 16 35 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.10 2.77 8.06 -2.39 -0.02 2.75 16 41 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.11 1.40 8.13 -2.39 -0.02 1.39 16 43 H 0.12 1.56 8.14 -2.38 -0.02 1.55 16 44 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 45 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.00 0.15 7.26 -2.38 -0.02 0.14 16 47 H 0.01 0.30 7.62 -2.39 -0.02 0.28 16 48 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 50 H 0.05 1.71 8.00 -2.39 -0.02 1.69 16 Total: -1.00 -80.98 408.27 3.23 -77.75 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.91 Total: 11.31 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 6.57 Total: 8.84 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -5.31 Total: -110.31 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.96 Total: -35.24 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -80.98 3.23 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147877303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.464 kcal (2) G-P(sol) polarization free energy of solvation -80.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds