Wall clock time and date at job start Wed Apr 1 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46688 * 2 1 4 4 O 1.42901 * 109.47094 * 119.99617 * 2 1 3 5 5 C 1.42893 * 114.00271 * 270.00486 * 4 2 1 6 6 C 1.50701 * 109.47055 * 180.02562 * 5 4 2 7 7 C 1.38238 * 119.99674 * 269.72189 * 6 5 4 8 8 C 1.38243 * 119.99445 * 179.76835 * 7 6 5 9 9 C 1.38233 * 120.00361 * 0.50589 * 8 7 6 10 10 C 1.38244 * 119.99918 * 359.74717 * 9 8 7 11 11 C 1.38237 * 119.99913 * 89.99733 * 6 5 4 12 12 C 1.50697 * 109.46887 * 240.00002 * 2 1 3 13 13 O 1.21283 * 119.99974 * 244.99824 * 12 2 1 14 14 N 1.34774 * 120.00345 * 65.00103 * 12 2 1 15 15 C 1.47889 * 134.34502 * 179.97438 * 14 12 2 16 16 C 1.52374 * 85.59061 * 156.55754 * 15 14 12 17 17 C 1.47894 * 134.33987 * 0.06152 * 14 12 2 18 18 C 1.53656 * 116.38986 * 141.35925 * 16 15 14 19 19 C 1.54597 * 102.73161 * 95.48609 * 18 16 15 20 20 N 1.47136 * 107.36670 * 20.75459 * 19 18 16 21 21 C 1.36938 * 125.58996 * 180.66450 * 20 19 18 22 22 H 1.08002 * 119.99889 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00054 * 0.02562 * 21 20 19 24 24 N 1.31624 * 119.99551 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00171 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46947 * 90.00409 * 25 23 21 27 27 H 1.48501 * 109.46857 * 210.00030 * 25 23 21 28 28 H 1.48501 * 109.46963 * 329.99874 * 25 23 21 29 29 C 1.47729 * 108.82430 * 0.92790 * 20 19 18 30 30 H 1.08997 * 109.47526 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47192 * 300.00142 * 1 2 3 33 33 H 1.09005 * 109.46923 * 299.99642 * 5 4 2 34 34 H 1.08991 * 109.47935 * 59.99640 * 5 4 2 35 35 H 1.07990 * 119.99957 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.99423 * 180.22983 * 8 7 6 37 37 H 1.07991 * 120.00429 * 179.72950 * 9 8 7 38 38 H 1.07993 * 120.00040 * 179.97438 * 10 9 8 39 39 H 1.07991 * 120.00144 * 359.97438 * 11 6 5 40 40 H 1.09000 * 113.85076 * 42.39173 * 15 14 12 41 41 H 1.09001 * 113.85367 * 270.72416 * 15 14 12 42 42 H 1.08995 * 113.85635 * 89.27448 * 17 14 12 43 43 H 1.09003 * 113.85124 * 317.60763 * 17 14 12 44 44 H 1.08999 * 110.75504 * 337.17811 * 18 16 15 45 45 H 1.08994 * 110.91686 * 213.87072 * 18 16 15 46 46 H 1.09005 * 109.86535 * 261.31083 * 19 18 16 47 47 H 1.08999 * 109.98373 * 140.26332 * 19 18 16 48 48 H 0.97006 * 119.99721 * 180.02562 * 24 23 21 49 49 H 1.09007 * 110.39933 * 96.33789 * 29 20 19 50 50 H 1.08995 * 110.40116 * 218.74649 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7014 -0.6282 3.4610 7 6 1.8029 -1.1954 4.3453 8 6 2.2627 -1.9434 5.4131 9 6 3.6211 -2.1156 5.6024 10 6 4.5198 -1.5439 4.7211 11 6 4.0599 -0.8002 3.6504 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1215 14 7 1.7919 -0.1942 -2.4520 15 6 2.1239 -0.6077 -3.8325 16 6 0.9278 0.2397 -4.2485 17 6 1.0924 1.0120 -2.9451 18 6 1.0820 1.0487 -5.5457 19 6 0.4367 0.1235 -6.6029 20 7 -0.4470 -0.8109 -5.8881 21 6 -1.1936 -1.8023 -6.4667 22 1 -1.8141 -2.4388 -5.8533 23 6 -1.1528 -1.9893 -7.8416 24 7 -0.3961 -1.2139 -8.5890 25 14 -2.1708 -3.3422 -8.6308 26 1 -3.5082 -2.8080 -8.9930 27 1 -1.4840 -3.8285 -9.8544 28 1 -2.3292 -4.4655 -7.6725 29 6 -0.4016 -0.5001 -4.4446 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.9319 0.9514 2.0450 34 1 1.2539 0.6547 2.5589 35 1 0.7418 -1.0569 4.2001 36 1 1.5606 -2.3897 6.1018 37 1 3.9805 -2.6963 6.4390 38 1 5.5811 -1.6780 4.8692 39 1 4.7619 -0.3537 2.9618 40 1 1.9939 -1.6741 -4.0166 41 1 3.0803 -0.2254 -4.1892 42 1 1.7335 1.8893 -3.0305 43 1 0.1526 1.2170 -2.4324 44 1 2.1346 1.2188 -5.7720 45 1 0.5445 1.9947 -5.4806 46 1 1.2116 -0.4310 -7.1323 47 1 -0.1443 0.7149 -7.3106 48 1 -0.3679 -1.3443 -9.5498 49 1 -1.2381 0.1417 -4.1677 50 1 -0.4157 -1.4183 -3.8576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148357400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:09 Heat of formation + Delta-G solvation = -4.128563 kcal Electronic energy + Delta-G solvation = -29675.274577 eV Core-core repulsion = 25668.986158 eV Total energy + Delta-G solvation = -4006.288418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88686 -40.44906 -39.79792 -38.32392 -37.20713 -34.20774 -33.52726 -32.10467 -31.80631 -31.14505 -29.72065 -27.62960 -27.30870 -27.14125 -25.65145 -24.27812 -23.49390 -22.27922 -22.10014 -20.55977 -19.62496 -18.85304 -18.32229 -17.97309 -17.54622 -17.00823 -16.81205 -16.58678 -16.42559 -16.20818 -15.85109 -15.58080 -15.52519 -14.73230 -14.61458 -14.28178 -14.22124 -14.19667 -13.82912 -13.74586 -13.65551 -13.43964 -13.34348 -13.18800 -13.01671 -12.83610 -12.76074 -12.46865 -12.36269 -12.04084 -11.94177 -11.92902 -11.87137 -11.66314 -11.63851 -11.26087 -10.94340 -10.67961 -10.46500 -9.83727 -9.77813 -9.72815 -8.86694 -7.84620 -5.18724 0.30347 0.48443 1.44432 1.45901 1.54093 1.54349 1.58107 2.48623 2.60693 3.09015 3.29348 3.35644 3.42747 3.66240 3.78453 3.83045 3.87926 3.97440 4.06219 4.13022 4.14859 4.20005 4.27249 4.33073 4.34638 4.39513 4.47892 4.62438 4.65225 4.66934 4.73945 4.74915 4.79191 4.84459 4.87474 5.00762 5.06170 5.08689 5.13645 5.16004 5.23813 5.26977 5.46095 5.52894 5.59194 5.64657 5.74932 5.83305 6.06086 6.11107 6.22634 6.68145 7.09608 7.12966 7.79823 8.42503 9.24965 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.001960 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.814018 B =14278.755823 C =14772.981066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 H 0.121 0.879 4 O -0.385 6.385 5 C 0.097 3.903 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.133 4.133 9 C -0.122 4.122 10 C -0.134 4.134 11 C -0.116 4.116 12 C 0.524 3.476 13 O -0.588 6.588 14 N -0.638 5.638 15 C 0.123 3.877 16 C -0.097 4.097 17 C 0.129 3.871 18 C -0.110 4.110 19 C 0.182 3.818 20 N -0.627 5.627 21 C -0.240 4.240 22 H 0.075 0.925 23 C -0.065 4.065 24 N -0.947 5.947 25 Si 0.973 3.027 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.275 1.275 29 C 0.158 3.842 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.045 0.955 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.006 0.994 47 H 0.010 0.990 48 H 0.246 0.754 49 H 0.043 0.957 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 11.177 26.968 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 H 0.139 0.861 4 O -0.304 6.304 5 C 0.022 3.978 6 C -0.110 4.110 7 C -0.129 4.129 8 C -0.151 4.151 9 C -0.140 4.140 10 C -0.152 4.152 11 C -0.134 4.134 12 C 0.315 3.685 13 O -0.468 6.468 14 N -0.374 5.374 15 C 0.001 3.999 16 C -0.098 4.098 17 C 0.008 3.992 18 C -0.149 4.149 19 C 0.057 3.943 20 N -0.354 5.354 21 C -0.369 4.369 22 H 0.093 0.907 23 C -0.258 4.258 24 N -0.596 5.596 25 Si 0.802 3.198 26 H -0.210 1.210 27 H -0.221 1.221 28 H -0.200 1.200 29 C 0.033 3.967 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.129 0.871 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.024 0.976 47 H 0.028 0.972 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.392 10.264 27.055 29.634 hybrid contribution -0.417 -1.192 -1.191 1.736 sum 5.975 9.072 25.865 28.053 Atomic orbital electron populations 1.22282 0.91884 1.03083 1.05206 1.21892 0.96158 0.96635 0.83014 0.86115 1.88111 1.86894 1.35777 1.19643 1.21617 1.01277 0.91424 0.83483 1.19817 0.94085 1.00877 0.96221 1.21340 1.00144 0.96750 0.94676 1.21491 0.96461 0.98844 0.98260 1.21553 0.93476 0.99159 0.99775 1.21459 1.01005 0.97779 0.94973 1.21315 0.95228 0.98874 0.97986 1.20880 0.78580 0.84907 0.84179 1.90690 1.43236 1.26310 1.86532 1.50226 1.56037 1.27139 1.03965 1.22979 0.98815 0.99456 0.78653 1.22293 0.94882 0.96732 0.95925 1.23441 0.98317 0.88525 0.88900 1.22516 1.01881 0.98037 0.92431 1.21018 0.91408 0.89638 0.92253 1.44849 1.51653 1.36573 1.02309 1.19369 1.18890 1.07841 0.90838 0.90718 1.25574 1.01591 1.01839 0.96794 1.70174 1.43624 1.41620 1.04197 0.85153 0.78013 0.78969 0.77655 1.20999 1.22084 1.20012 1.21200 0.94388 0.96270 0.84812 0.89142 0.93612 0.88463 0.90929 0.89816 0.84740 0.83877 0.83812 0.84243 0.85678 0.93665 0.87739 0.85113 0.87060 0.89258 0.88752 0.97610 0.97210 0.94446 0.93979 0.96027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.44 71.98 0.68 -2.17 16 2 C 0.08 1.78 2.91 29.85 0.09 1.86 16 3 H 0.12 1.62 7.79 -2.39 -0.02 1.60 16 4 O -0.38 -9.91 9.51 -129.99 -1.24 -11.14 16 5 C 0.10 1.67 5.87 71.24 0.42 2.09 16 6 C -0.11 -2.15 5.51 -19.86 -0.11 -2.26 16 7 C -0.11 -1.95 9.70 22.27 0.22 -1.74 16 8 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 9 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 10 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 11 C -0.12 -2.23 9.70 22.27 0.22 -2.01 16 12 C 0.52 16.30 7.41 87.66 0.65 16.95 16 13 O -0.59 -25.19 17.23 15.95 0.27 -24.91 16 14 N -0.64 -17.23 3.60 -863.57 -3.11 -20.34 16 15 C 0.12 3.85 8.14 85.91 0.70 4.55 16 16 C -0.10 -2.79 0.99 -52.15 -0.05 -2.84 16 17 C 0.13 2.36 7.64 85.91 0.66 3.01 16 18 C -0.11 -3.31 6.36 31.36 0.20 -3.11 16 19 C 0.18 8.47 5.39 86.80 0.47 8.94 16 20 N -0.63 -31.51 3.41 -693.33 -2.36 -33.87 16 21 C -0.24 -13.59 10.28 84.03 0.86 -12.72 16 22 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.06 -3.72 5.49 84.86 0.47 -3.26 16 24 N -0.95 -56.79 10.30 21.65 0.22 -56.57 16 25 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 29 C 0.16 6.08 6.63 86.28 0.57 6.66 16 30 H 0.09 1.28 5.59 -2.39 -0.01 1.26 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.09 7.87 -2.38 -0.02 1.07 16 33 H 0.07 0.99 8.03 -2.38 -0.02 0.97 16 34 H 0.08 0.99 7.81 -2.39 -0.02 0.97 16 35 H 0.13 1.90 8.06 -2.92 -0.02 1.88 16 36 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.13 2.18 8.06 -2.92 -0.02 2.16 16 40 H 0.04 1.78 8.12 -2.39 -0.02 1.76 16 41 H 0.10 2.82 8.04 -2.39 -0.02 2.80 16 42 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 1.53 5.99 -2.39 -0.01 1.51 16 44 H 0.09 2.29 7.99 -2.39 -0.02 2.27 16 45 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.01 0.30 7.40 -2.38 -0.02 0.28 16 47 H 0.01 0.51 7.47 -2.39 -0.02 0.49 16 48 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 49 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 50 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 Total: -1.00 -82.63 405.70 3.44 -79.19 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.92 Total: 10.51 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.70 Total: 8.54 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -5.25 Total: -110.77 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.96 Total: -36.06 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -82.63 3.44 -79.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148357400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.061 kcal (2) G-P(sol) polarization free energy of solvation -82.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds