Wall clock time and date at job start Wed Apr 1 2020 03:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 O 1.42896 * 109.47373 * 295.00392 * 4 2 1 6 6 C 1.35897 * 117.00249 * 179.97438 * 5 4 2 7 7 C 1.38730 * 120.05460 * 359.72255 * 6 5 4 8 8 C 1.38141 * 119.94637 * 179.74119 * 7 6 5 9 9 C 1.38271 * 120.05099 * 0.51268 * 8 7 6 10 10 C 1.38260 * 120.11320 * 359.76661 * 9 8 7 11 11 C 1.38140 * 120.05900 * 359.97393 * 10 9 8 12 12 C 1.50697 * 109.47466 * 240.00036 * 2 1 3 13 13 O 1.21277 * 119.99998 * 240.00274 * 12 2 1 14 14 N 1.34777 * 120.00075 * 59.99457 * 12 2 1 15 15 C 1.47391 * 135.85083 * 359.64021 * 14 12 2 16 16 C 1.52075 * 87.40964 * 154.37995 * 15 14 12 17 17 C 1.47389 * 135.85275 * 180.02562 * 14 12 2 18 18 C 1.53509 * 117.21193 * 267.27984 * 16 15 14 19 19 C 1.54633 * 102.70092 * 262.92695 * 18 16 15 20 20 N 1.47146 * 107.37698 * 339.38770 * 19 18 16 21 21 C 1.36944 * 125.57619 * 179.04278 * 20 19 18 22 22 H 1.08001 * 119.99832 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00330 * 0.02562 * 21 20 19 24 24 N 1.31615 * 119.99835 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00035 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46885 * 90.00575 * 25 23 21 27 27 H 1.48502 * 109.47081 * 210.00297 * 25 23 21 28 28 H 1.48494 * 109.47149 * 330.00371 * 25 23 21 29 29 C 1.47749 * 108.84262 * 359.08518 * 20 19 18 30 30 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 33 33 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 34 34 H 1.08995 * 109.46794 * 175.00294 * 4 2 1 35 35 H 1.08001 * 120.02947 * 0.02562 * 7 6 5 36 36 H 1.07994 * 119.97848 * 180.27862 * 8 7 6 37 37 H 1.08000 * 119.94112 * 179.74315 * 9 8 7 38 38 H 1.08005 * 119.97414 * 179.97438 * 10 9 8 39 39 H 1.07998 * 120.03284 * 179.97438 * 11 10 9 40 40 H 1.08997 * 113.54128 * 268.99143 * 15 14 12 41 41 H 1.08998 * 113.54610 * 39.67193 * 15 14 12 42 42 H 1.09000 * 113.54339 * 320.32522 * 17 14 12 43 43 H 1.08998 * 113.54175 * 90.94020 * 17 14 12 44 44 H 1.08992 * 110.76792 * 21.23029 * 18 16 15 45 45 H 1.09008 * 110.76138 * 144.63133 * 18 16 15 46 46 H 1.08999 * 109.86501 * 98.83740 * 19 18 16 47 47 H 1.09001 * 109.86597 * 219.93709 * 19 18 16 48 48 H 0.97001 * 120.00034 * 179.97438 * 24 23 21 49 49 H 1.08996 * 110.40623 * 263.50356 * 29 20 19 50 50 H 1.09002 * 110.40320 * 141.07682 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6619 0.0168 2.4131 6 6 2.0396 -0.4913 3.6156 7 6 2.7543 -1.6789 3.6745 8 6 3.1417 -2.1906 4.8978 9 6 2.8085 -1.5257 6.0634 10 6 2.0912 -0.3450 6.0077 11 6 1.7061 0.1737 4.7867 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6964 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 0.9076 0.8688 -2.9856 16 6 1.7690 0.7997 -4.2369 17 6 1.9893 -0.6502 -3.8446 18 6 3.0081 1.7045 -4.2870 19 6 2.5048 2.9259 -5.0907 20 7 1.3200 2.4950 -5.8494 21 6 0.5684 3.2904 -6.6727 22 1 -0.2870 2.8787 -7.1877 23 6 0.9059 4.6257 -6.8453 24 7 1.9486 5.1272 -6.2180 25 14 -0.1190 5.7104 -7.9689 26 1 -1.2092 6.3447 -7.1850 27 1 0.7433 6.7648 -8.5604 28 1 -0.7058 4.8841 -9.0542 29 6 1.0733 1.0640 -5.5767 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 3.0117 -2.2006 2.7646 36 1 3.7020 -3.1127 4.9440 37 1 3.1087 -1.9295 7.0191 38 1 1.8318 0.1723 6.9196 39 1 1.1455 1.0958 4.7436 40 1 -0.1372 0.6126 -3.1614 41 1 1.0273 1.7949 -2.4233 42 1 3.0124 -0.9927 -3.9998 43 1 1.2478 -1.3324 -4.2605 44 1 3.3111 2.0008 -3.2829 45 1 3.8271 1.2094 -4.8089 46 1 2.2348 3.7323 -4.4087 47 1 3.2815 3.2634 -5.7770 48 1 2.1847 6.0603 -6.3389 49 1 1.5116 0.4466 -6.3608 50 1 0.0035 0.8718 -5.4939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148762692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:03 Heat of formation + Delta-G solvation = 17.909857 kcal Electronic energy + Delta-G solvation = -29640.032524 eV Core-core repulsion = 25634.699763 eV Total energy + Delta-G solvation = -4005.332761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.90916 -40.31854 -38.73046 -37.57666 -35.72777 -34.06783 -32.21897 -31.28983 -30.11468 -29.50668 -28.73072 -27.06312 -26.03274 -25.94716 -24.12484 -23.25327 -22.68841 -21.61764 -20.34540 -19.18843 -18.61050 -18.32553 -17.07300 -16.72518 -16.29245 -16.22553 -16.06520 -15.74329 -15.45784 -14.85466 -14.61341 -14.42693 -14.19747 -13.83346 -13.79462 -13.65628 -13.22170 -13.16271 -12.78787 -12.50158 -12.41907 -12.25242 -11.98474 -11.94380 -11.86439 -11.84063 -11.44490 -11.05188 -11.01607 -10.97621 -10.93047 -10.71791 -10.47213 -10.23788 -10.14292 -9.90599 -9.71884 -9.60358 -9.28844 -8.64747 -8.63903 -8.46640 -6.88623 -5.75606 -3.09493 1.05675 1.17414 2.48783 2.58336 3.18878 3.37196 3.42596 3.44477 3.51902 4.26784 4.40902 4.47516 4.57278 4.59060 4.60647 4.67495 4.85205 4.90012 5.01331 5.07166 5.11995 5.18942 5.28901 5.32193 5.39679 5.43575 5.46640 5.56228 5.61052 5.62980 5.66890 5.71656 5.76851 5.77790 5.84419 5.96512 6.04724 6.11060 6.13740 6.18063 6.24929 6.40939 6.46284 6.49592 6.60778 6.65546 7.15801 7.51073 7.56610 7.73799 7.78089 8.07704 8.20324 9.17084 9.77125 10.42337 11.35933 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.001953 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.141871 B =14336.444430 C =15047.444369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.109 0.891 4 C 0.081 3.919 5 O -0.313 6.313 6 C 0.135 3.865 7 C -0.209 4.209 8 C -0.080 4.080 9 C -0.163 4.163 10 C -0.083 4.083 11 C -0.154 4.154 12 C 0.551 3.449 13 O -0.552 6.552 14 N -0.638 5.638 15 C 0.119 3.881 16 C -0.105 4.105 17 C 0.119 3.881 18 C -0.117 4.117 19 C 0.179 3.821 20 N -0.604 5.604 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.154 3.846 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.044 0.956 48 H 0.252 0.748 49 H 0.027 0.973 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 -12.701 19.878 23.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.127 0.873 4 C 0.006 3.994 5 O -0.227 6.227 6 C 0.089 3.911 7 C -0.228 4.228 8 C -0.099 4.099 9 C -0.181 4.181 10 C -0.101 4.101 11 C -0.173 4.173 12 C 0.340 3.660 13 O -0.430 6.430 14 N -0.372 5.372 15 C -0.003 4.003 16 C -0.107 4.107 17 C -0.003 4.003 18 C -0.156 4.156 19 C 0.055 3.945 20 N -0.331 5.331 21 C -0.357 4.357 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.027 3.973 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.044 0.956 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.194 -12.893 20.012 23.806 hybrid contribution -0.384 0.465 -0.671 0.902 sum -0.577 -12.427 19.340 22.996 Atomic orbital electron populations 1.21781 0.91879 1.02790 1.03616 1.21076 0.98734 1.01729 0.90977 0.87275 1.22496 1.00406 0.94594 0.81949 1.85987 1.74184 1.50162 1.12355 1.19023 0.94183 0.92458 0.85423 1.21378 1.04254 0.97567 0.99559 1.20974 0.97819 0.99210 0.91858 1.21065 1.01903 0.96801 0.98332 1.20965 0.96657 0.95558 0.96888 1.20472 1.04955 1.01888 0.89954 1.19710 0.79987 0.83572 0.82709 1.90695 1.39395 1.26845 1.86096 1.49748 1.51260 1.31711 1.04497 1.22947 0.95687 0.89324 0.92340 1.22200 0.98196 0.94162 0.96161 1.22805 1.02018 0.96994 0.78484 1.22473 0.94869 0.97671 1.00545 1.21227 0.89018 0.91111 0.93169 1.44538 1.31206 1.04180 1.53183 1.19040 1.07008 0.90699 1.18946 0.90386 1.24800 0.98256 0.97006 1.00345 1.69954 1.27552 1.13586 1.45790 0.86125 0.79148 0.80368 0.80138 1.21613 1.21710 1.20704 1.21136 0.96935 0.87940 0.91302 0.92250 0.90639 0.91327 0.91173 0.90921 0.85198 0.85836 0.86020 0.85436 0.85163 0.89331 0.89924 0.90389 0.89682 0.92108 0.91775 0.93487 0.93781 0.93722 0.95554 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.97 37.16 0.33 -1.09 16 2 C -0.10 -1.19 2.84 -91.77 -0.26 -1.45 16 3 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.08 0.91 3.47 37.16 0.13 1.04 16 5 O -0.31 -3.62 9.67 -19.42 -0.19 -3.81 16 6 C 0.13 1.48 6.69 -39.22 -0.26 1.22 16 7 C -0.21 -2.12 9.04 -39.44 -0.36 -2.48 16 8 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 9 C -0.16 -1.29 10.04 -39.56 -0.40 -1.69 16 10 C -0.08 -0.67 10.04 -39.61 -0.40 -1.06 16 11 C -0.15 -1.48 9.99 -39.43 -0.39 -1.87 16 12 C 0.55 7.80 7.40 -10.99 -0.08 7.72 16 13 O -0.55 -9.42 16.69 5.56 0.09 -9.33 16 14 N -0.64 -8.72 3.65 -185.70 -0.68 -9.40 16 15 C 0.12 1.61 6.08 -7.32 -0.04 1.56 16 16 C -0.11 -1.62 1.06 -155.20 -0.16 -1.79 16 17 C 0.12 1.61 8.03 -7.46 -0.06 1.55 16 18 C -0.12 -2.04 6.41 -25.61 -0.16 -2.21 16 19 C 0.18 4.09 5.39 -2.83 -0.02 4.07 16 20 N -0.60 -14.36 3.41 -170.54 -0.58 -14.94 16 21 C -0.23 -6.05 10.28 -15.06 -0.15 -6.21 16 22 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.19 10.30 55.49 0.57 -25.62 16 25 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.15 2.82 6.70 -3.22 -0.02 2.80 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.71 7.82 -51.93 -0.41 0.30 16 32 H 0.07 0.67 6.28 -51.93 -0.33 0.34 16 33 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 34 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 35 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.09 1.08 7.98 -51.93 -0.41 0.66 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 45 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 46 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 47 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -31.25 402.36 -10.61 -41.87 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.07 Total: 0.04 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.80 Total: -1.29 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.69 Total: -49.96 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.09 Total: -13.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.25 -10.61 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148762692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.775 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds