Wall clock time and date at job start Wed Apr 1 2020 03:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 O 1.42896 * 109.47373 * 295.00392 * 4 2 1 6 6 C 1.35897 * 117.00249 * 179.97438 * 5 4 2 7 7 C 1.38730 * 120.05460 * 359.72255 * 6 5 4 8 8 C 1.38141 * 119.94637 * 179.74119 * 7 6 5 9 9 C 1.38271 * 120.05099 * 0.51268 * 8 7 6 10 10 C 1.38260 * 120.11320 * 359.76661 * 9 8 7 11 11 C 1.38140 * 120.05900 * 359.97393 * 10 9 8 12 12 C 1.50697 * 109.47466 * 240.00036 * 2 1 3 13 13 O 1.21277 * 119.99998 * 240.00274 * 12 2 1 14 14 N 1.34777 * 120.00075 * 59.99457 * 12 2 1 15 15 C 1.47391 * 135.85083 * 359.64021 * 14 12 2 16 16 C 1.52075 * 87.40964 * 154.37995 * 15 14 12 17 17 C 1.47389 * 135.85275 * 180.02562 * 14 12 2 18 18 C 1.53509 * 117.21193 * 267.27984 * 16 15 14 19 19 C 1.54633 * 102.70092 * 262.92695 * 18 16 15 20 20 N 1.47146 * 107.37698 * 339.38770 * 19 18 16 21 21 C 1.36944 * 125.57619 * 179.04278 * 20 19 18 22 22 H 1.08001 * 119.99832 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00330 * 0.02562 * 21 20 19 24 24 N 1.31615 * 119.99835 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00035 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46885 * 90.00575 * 25 23 21 27 27 H 1.48502 * 109.47081 * 210.00297 * 25 23 21 28 28 H 1.48494 * 109.47149 * 330.00371 * 25 23 21 29 29 C 1.47749 * 108.84262 * 359.08518 * 20 19 18 30 30 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 33 33 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 34 34 H 1.08995 * 109.46794 * 175.00294 * 4 2 1 35 35 H 1.08001 * 120.02947 * 0.02562 * 7 6 5 36 36 H 1.07994 * 119.97848 * 180.27862 * 8 7 6 37 37 H 1.08000 * 119.94112 * 179.74315 * 9 8 7 38 38 H 1.08005 * 119.97414 * 179.97438 * 10 9 8 39 39 H 1.07998 * 120.03284 * 179.97438 * 11 10 9 40 40 H 1.08997 * 113.54128 * 268.99143 * 15 14 12 41 41 H 1.08998 * 113.54610 * 39.67193 * 15 14 12 42 42 H 1.09000 * 113.54339 * 320.32522 * 17 14 12 43 43 H 1.08998 * 113.54175 * 90.94020 * 17 14 12 44 44 H 1.08992 * 110.76792 * 21.23029 * 18 16 15 45 45 H 1.09008 * 110.76138 * 144.63133 * 18 16 15 46 46 H 1.08999 * 109.86501 * 98.83740 * 19 18 16 47 47 H 1.09001 * 109.86597 * 219.93709 * 19 18 16 48 48 H 0.97001 * 120.00034 * 179.97438 * 24 23 21 49 49 H 1.08996 * 110.40623 * 263.50356 * 29 20 19 50 50 H 1.09002 * 110.40320 * 141.07682 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6619 0.0168 2.4131 6 6 2.0396 -0.4913 3.6156 7 6 2.7543 -1.6789 3.6745 8 6 3.1417 -2.1906 4.8978 9 6 2.8085 -1.5257 6.0634 10 6 2.0912 -0.3450 6.0077 11 6 1.7061 0.1737 4.7867 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6964 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 0.9076 0.8688 -2.9856 16 6 1.7690 0.7997 -4.2369 17 6 1.9893 -0.6502 -3.8446 18 6 3.0081 1.7045 -4.2870 19 6 2.5048 2.9259 -5.0907 20 7 1.3200 2.4950 -5.8494 21 6 0.5684 3.2904 -6.6727 22 1 -0.2870 2.8787 -7.1877 23 6 0.9059 4.6257 -6.8453 24 7 1.9486 5.1272 -6.2180 25 14 -0.1190 5.7104 -7.9689 26 1 -1.2092 6.3447 -7.1850 27 1 0.7433 6.7648 -8.5604 28 1 -0.7058 4.8841 -9.0542 29 6 1.0733 1.0640 -5.5767 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2057 35 1 3.0117 -2.2006 2.7646 36 1 3.7020 -3.1127 4.9440 37 1 3.1087 -1.9295 7.0191 38 1 1.8318 0.1723 6.9196 39 1 1.1455 1.0958 4.7436 40 1 -0.1372 0.6126 -3.1614 41 1 1.0273 1.7949 -2.4233 42 1 3.0124 -0.9927 -3.9998 43 1 1.2478 -1.3324 -4.2605 44 1 3.3111 2.0008 -3.2829 45 1 3.8271 1.2094 -4.8089 46 1 2.2348 3.7323 -4.4087 47 1 3.2815 3.2634 -5.7770 48 1 2.1847 6.0603 -6.3389 49 1 1.5116 0.4466 -6.3608 50 1 0.0035 0.8718 -5.4939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148762692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:02 Heat of formation + Delta-G solvation = 1.035654 kcal Electronic energy + Delta-G solvation = -29640.764244 eV Core-core repulsion = 25634.699763 eV Total energy + Delta-G solvation = -4006.064481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06301 -41.13657 -39.87700 -38.38280 -37.31608 -35.01799 -34.02776 -31.96611 -31.26887 -30.72980 -30.16313 -27.92276 -27.49850 -27.10361 -25.71562 -24.22170 -23.41899 -22.45198 -22.11694 -20.30522 -19.75113 -19.30907 -18.58632 -17.99060 -17.29010 -17.16843 -16.87153 -16.71565 -16.59648 -16.51064 -15.94708 -15.59472 -15.32249 -15.13441 -14.67431 -14.39572 -14.32908 -14.17231 -13.98616 -13.70216 -13.68941 -13.52521 -13.37311 -13.14629 -12.85946 -12.77073 -12.73839 -12.48356 -12.25282 -12.23725 -12.01672 -11.89753 -11.85386 -11.81020 -11.70312 -11.63902 -11.20952 -10.83100 -10.65729 -9.96004 -9.77755 -9.19375 -8.83859 -7.80277 -5.14761 0.38558 0.48116 1.44928 1.49930 1.50812 1.54192 1.59382 2.26596 2.53264 2.84241 3.22255 3.35353 3.44494 3.54949 3.61653 3.73475 3.83520 3.90474 3.98415 4.05441 4.12516 4.22261 4.27407 4.32692 4.38692 4.46605 4.50356 4.55450 4.57321 4.62000 4.70285 4.72283 4.72657 4.80211 4.85438 4.90113 4.96482 5.04989 5.08502 5.17608 5.18317 5.22434 5.36221 5.48505 5.52150 5.60010 5.69327 5.81760 5.84753 6.23864 6.38369 6.62817 6.97022 7.14979 7.82712 8.46681 9.30134 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.001953 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.141871 B =14336.444430 C =15047.444369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.113 0.887 4 C 0.088 3.912 5 O -0.321 6.321 6 C 0.108 3.892 7 C -0.224 4.224 8 C -0.088 4.088 9 C -0.163 4.163 10 C -0.083 4.083 11 C -0.166 4.166 12 C 0.550 3.450 13 O -0.583 6.583 14 N -0.637 5.637 15 C 0.126 3.874 16 C -0.101 4.101 17 C 0.126 3.874 18 C -0.103 4.103 19 C 0.190 3.810 20 N -0.625 5.625 21 C -0.233 4.233 22 H 0.087 0.913 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.974 3.026 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.268 1.268 29 C 0.152 3.848 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.013 0.987 47 H 0.003 0.997 48 H 0.244 0.756 49 H 0.033 0.967 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 -14.181 21.256 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.131 0.869 4 C 0.013 3.987 5 O -0.236 6.236 6 C 0.063 3.937 7 C -0.243 4.243 8 C -0.106 4.106 9 C -0.181 4.181 10 C -0.101 4.101 11 C -0.185 4.185 12 C 0.341 3.659 13 O -0.464 6.464 14 N -0.370 5.370 15 C 0.004 3.996 16 C -0.103 4.103 17 C 0.004 3.996 18 C -0.141 4.141 19 C 0.065 3.935 20 N -0.351 5.351 21 C -0.362 4.362 22 H 0.105 0.895 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.803 3.197 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.193 1.193 29 C 0.027 3.973 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.155 0.845 40 H 0.129 0.871 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.031 0.969 47 H 0.021 0.979 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.507 -14.408 21.389 25.833 hybrid contribution 0.046 0.872 -1.059 1.373 sum -1.461 -13.536 20.329 24.467 Atomic orbital electron populations 1.21750 0.90471 1.03087 1.04122 1.21049 0.99774 1.01379 0.89785 0.86915 1.22354 0.99700 0.94555 0.82130 1.85951 1.74549 1.50433 1.12619 1.19317 0.95498 0.93361 0.85515 1.21488 1.04844 0.97690 1.00246 1.21286 0.97744 0.99987 0.91600 1.21446 1.00949 0.96484 0.99170 1.21338 0.95834 0.95618 0.97272 1.20729 1.05301 1.02300 0.90176 1.20085 0.79327 0.83193 0.83280 1.90682 1.40844 1.28383 1.86521 1.49718 1.51081 1.31636 1.04587 1.22986 0.96427 0.89315 0.90910 1.22018 0.97164 0.95460 0.95611 1.22824 1.02932 0.95623 0.78235 1.22265 0.96016 0.95816 1.00044 1.20911 0.87919 0.92625 0.92077 1.44821 1.31101 1.06385 1.52829 1.19461 1.07028 0.91145 1.18580 0.89513 1.25604 0.99630 0.98594 1.02321 1.70180 1.29311 1.13212 1.47535 0.85130 0.77477 0.78415 0.78632 1.21338 1.22727 1.19325 1.21306 0.98297 0.84885 0.92860 0.92048 0.90060 0.90830 0.91326 0.92011 0.85610 0.83974 0.83407 0.82753 0.84512 0.87080 0.90100 0.90438 0.87173 0.91146 0.90974 0.96872 0.97906 0.94641 0.94884 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.97 71.98 0.65 -1.85 16 2 C -0.10 -2.16 2.84 -11.54 -0.03 -2.20 16 3 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.09 1.99 3.47 71.98 0.25 2.24 16 5 O -0.32 -7.41 9.67 -92.39 -0.89 -8.30 16 6 C 0.11 2.36 6.69 22.51 0.15 2.51 16 7 C -0.22 -4.52 9.04 22.36 0.20 -4.31 16 8 C -0.09 -1.41 10.04 22.25 0.22 -1.19 16 9 C -0.16 -2.21 10.04 22.28 0.22 -1.99 16 10 C -0.08 -1.17 10.04 22.25 0.22 -0.94 16 11 C -0.17 -3.05 9.99 22.37 0.22 -2.83 16 12 C 0.55 14.86 7.40 87.66 0.65 15.51 16 13 O -0.58 -19.48 16.69 -3.02 -0.05 -19.53 16 14 N -0.64 -16.01 3.65 -859.81 -3.14 -19.15 16 15 C 0.13 3.07 6.08 83.77 0.51 3.58 16 16 C -0.10 -2.91 1.06 -52.61 -0.06 -2.97 16 17 C 0.13 3.05 8.03 83.68 0.67 3.72 16 18 C -0.10 -3.54 6.41 31.32 0.20 -3.34 16 19 C 0.19 8.91 5.39 86.81 0.47 9.38 16 20 N -0.62 -29.67 3.41 -693.45 -2.36 -32.04 16 21 C -0.23 -12.32 10.28 84.03 0.86 -11.46 16 22 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 23 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 24 N -0.95 -56.13 10.30 21.65 0.22 -55.91 16 25 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 26 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 C 0.15 5.29 6.70 86.23 0.58 5.87 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.40 7.82 -2.38 -0.02 1.38 16 32 H 0.07 1.26 6.28 -2.39 -0.01 1.24 16 33 H 0.07 1.53 7.65 -2.38 -0.02 1.52 16 34 H 0.06 1.50 7.49 -2.39 -0.02 1.48 16 35 H 0.13 2.52 6.30 -2.91 -0.02 2.50 16 36 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.11 2.29 7.98 -2.39 -0.02 2.28 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 45 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.01 0.69 7.38 -2.39 -0.02 0.67 16 47 H 0.00 0.15 7.49 -2.39 -0.02 0.13 16 48 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 1.89 8.00 -2.39 -0.02 1.87 16 Total: -1.00 -69.27 402.36 3.18 -66.09 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.92 Total: 15.88 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.46 Total: 6.40 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.28 Total: -107.09 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.94 Total: -27.84 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.27 3.18 -66.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148762692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.121 kcal (2) G-P(sol) polarization free energy of solvation -69.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds