Wall clock time and date at job start Wed Apr 1 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47550 * 2 1 4 4 O 1.42907 * 109.46846 * 240.00000 * 2 1 3 5 5 C 1.35902 * 116.99791 * 84.85069 * 4 2 1 6 6 C 1.38724 * 120.05397 * 174.42648 * 5 4 2 7 7 C 1.38148 * 119.94243 * 179.74044 * 6 5 4 8 8 C 1.38268 * 120.05464 * 0.51432 * 7 6 5 9 9 C 1.38256 * 120.11127 * 359.75933 * 8 7 6 10 10 C 1.38144 * 120.05920 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.47237 * 120.00321 * 2 1 3 12 12 O 1.21279 * 119.99962 * 120.00039 * 11 2 1 13 13 N 1.34777 * 119.99675 * 299.99351 * 11 2 1 14 14 C 1.46499 * 119.99690 * 180.02562 * 13 11 2 15 15 C 1.53001 * 109.46934 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.46919 * 179.97438 * 15 14 13 17 17 C 1.29461 * 117.69291 * 95.00085 * 16 15 14 18 18 C 1.50327 * 123.64799 * 180.57744 * 17 16 15 19 19 N 1.46998 * 109.16709 * 349.27828 * 18 17 16 20 20 C 1.36940 * 121.37852 * 222.97047 * 19 18 17 21 21 H 1.07998 * 120.00355 * 155.61871 * 20 19 18 22 22 C 1.38814 * 119.99733 * 335.62909 * 20 19 18 23 23 N 1.31621 * 120.00091 * 345.07085 * 22 20 19 24 24 Si 1.86797 * 120.00274 * 165.07186 * 22 20 19 25 25 H 1.48506 * 109.47153 * 59.99764 * 24 22 20 26 26 H 1.48503 * 109.47442 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47083 * 299.99953 * 24 22 20 28 28 C 1.47344 * 117.25269 * 42.94765 * 19 18 17 29 29 C 1.49958 * 117.69348 * 275.21847 * 16 15 14 30 30 H 1.09005 * 109.46616 * 300.00157 * 1 2 3 31 31 H 1.09001 * 109.47151 * 59.99584 * 1 2 3 32 32 H 1.08993 * 109.47285 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.03224 * 359.97438 * 6 5 4 34 34 H 1.08006 * 119.97648 * 180.27433 * 7 6 5 35 35 H 1.08003 * 119.94165 * 179.74166 * 8 7 6 36 36 H 1.08001 * 119.97373 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.03198 * 179.97438 * 10 9 8 38 38 H 0.96993 * 120.00164 * 0.02562 * 13 11 2 39 39 H 1.09000 * 109.47571 * 60.00257 * 14 13 11 40 40 H 1.09002 * 109.47152 * 300.00547 * 14 13 11 41 41 H 1.08991 * 109.47387 * 60.00301 * 15 14 13 42 42 H 1.08998 * 109.46840 * 299.99659 * 15 14 13 43 43 H 1.07996 * 118.17663 * 0.85305 * 17 16 15 44 44 H 1.08994 * 109.51974 * 109.18940 * 18 17 16 45 45 H 1.09003 * 109.51782 * 229.37063 * 18 17 16 46 46 H 0.96993 * 120.00535 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.77558 * 57.81027 * 28 19 18 48 48 H 1.09001 * 109.77873 * 178.61663 * 28 19 18 49 49 H 1.09000 * 109.43791 * 40.82336 * 29 16 15 50 50 H 1.09008 * 109.13632 * 281.43532 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.1094 0.0618 -2.3050 6 6 2.6725 -0.4955 -3.4437 7 6 2.7713 0.2525 -4.6010 8 6 2.3193 1.5590 -4.6217 9 6 1.7629 2.1186 -3.4865 10 6 1.6568 1.3731 -2.3283 11 6 2.0324 -0.7105 1.2304 12 8 2.7296 -1.6965 1.1191 13 7 1.7069 -0.2500 2.4545 14 6 2.1957 -0.9403 3.6506 15 6 1.6852 -0.2194 4.8999 16 6 2.1875 -0.9299 6.1303 17 6 3.2731 -0.4874 6.6796 18 6 3.8987 -1.1012 7.9009 19 7 2.9633 -2.0726 8.4859 20 6 2.7598 -2.1412 9.8384 21 1 1.8357 -2.5442 10.2257 22 6 3.7413 -1.6926 10.7115 23 7 4.9641 -1.4792 10.2736 24 14 3.3268 -1.3918 12.5079 25 1 2.8489 -2.6557 13.1240 26 1 4.5396 -0.9204 13.2236 27 1 2.2624 -0.3608 12.6043 28 6 2.2532 -2.9692 7.5570 29 6 1.3974 -2.1028 6.6292 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.0298 -1.5145 -3.4268 34 1 3.2055 -0.1824 -5.4892 35 1 2.4013 2.1435 -5.5262 36 1 1.4110 3.1395 -3.5050 37 1 1.2225 1.8108 -1.4417 38 1 1.1490 0.5385 2.5435 39 1 3.2857 -0.9399 3.6505 40 1 1.8327 -1.9681 3.6508 41 1 0.5953 -0.2202 4.9000 42 1 2.0479 0.8084 4.8999 43 1 3.7536 0.3732 6.2383 44 1 4.8224 -1.6077 7.6214 45 1 4.1164 -0.3206 8.6299 46 1 5.6500 -1.1661 10.8837 47 1 2.9742 -3.5377 6.9696 48 1 1.6144 -3.6510 8.1184 49 1 1.0639 -2.7022 5.7822 50 1 0.5266 -1.7405 7.1759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161808339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:41 Heat of formation + Delta-G solvation = -31.030857 kcal Electronic energy + Delta-G solvation = -28729.432113 eV Core-core repulsion = 24721.977124 eV Total energy + Delta-G solvation = -4007.454989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69562 -40.46053 -39.46779 -38.29193 -36.76075 -35.23100 -33.62632 -32.83849 -31.75676 -31.46651 -30.63352 -29.99013 -27.24251 -25.76806 -24.66415 -24.08413 -23.62486 -22.99513 -22.48628 -21.34011 -19.46709 -19.43026 -18.48405 -17.70615 -17.24117 -17.02388 -16.91090 -16.68032 -16.27906 -16.12968 -15.72952 -15.50090 -15.40817 -15.20466 -14.91916 -14.82134 -14.38802 -14.30015 -14.10327 -13.89075 -13.60123 -13.39991 -13.29593 -13.20901 -12.87166 -12.83250 -12.76018 -12.57692 -12.44587 -12.37164 -12.20721 -12.08882 -11.89528 -11.74472 -11.67737 -11.24914 -10.90467 -10.68073 -10.21514 -9.94350 -9.48818 -9.19140 -8.74844 -7.88017 -5.30920 0.39467 0.47651 1.34457 1.42888 1.46725 1.49218 1.56206 1.65012 2.51104 2.55447 2.84966 3.28639 3.46804 3.66609 3.69846 3.84911 3.93561 3.97052 4.00833 4.08695 4.12033 4.29086 4.29508 4.41024 4.51925 4.54808 4.58527 4.63190 4.65969 4.69418 4.77185 4.86647 4.90790 4.97358 5.06133 5.08784 5.12574 5.17902 5.23752 5.31885 5.35579 5.41647 5.48555 5.50592 5.60435 5.61488 5.84120 5.88018 6.28322 6.33400 6.33650 6.49728 7.11663 7.13085 7.83084 8.38166 9.20404 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.033657 B = 0.001545 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.719628 B =18121.130390 C =18184.286661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.126 0.874 4 O -0.318 6.318 5 C 0.106 3.894 6 C -0.176 4.176 7 C -0.084 4.084 8 C -0.163 4.163 9 C -0.083 4.083 10 C -0.215 4.215 11 C 0.511 3.489 12 O -0.575 6.575 13 N -0.704 5.704 14 C 0.132 3.868 15 C -0.077 4.077 16 C -0.121 4.121 17 C -0.174 4.174 18 C 0.206 3.794 19 N -0.614 5.614 20 C -0.260 4.260 21 H 0.071 0.929 22 C -0.056 4.056 23 N -0.942 5.942 24 Si 0.972 3.028 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.277 1.277 28 C 0.134 3.866 29 C -0.087 4.087 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.421 0.579 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.000 1.000 45 H 0.055 0.945 46 H 0.250 0.750 47 H 0.015 0.985 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.530 11.614 -29.482 34.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.144 0.856 4 O -0.232 6.232 5 C 0.062 3.938 6 C -0.195 4.195 7 C -0.102 4.102 8 C -0.181 4.181 9 C -0.101 4.101 10 C -0.234 4.234 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.358 5.358 14 C 0.008 3.992 15 C -0.114 4.114 16 C -0.122 4.122 17 C -0.194 4.194 18 C 0.081 3.919 19 N -0.339 5.339 20 C -0.390 4.390 21 H 0.089 0.911 22 C -0.251 4.251 23 N -0.589 5.589 24 Si 0.800 3.200 25 H -0.201 1.201 26 H -0.221 1.221 27 H -0.203 1.203 28 C 0.009 3.991 29 C -0.126 4.126 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.259 0.741 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.033 0.967 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.869 10.741 -29.407 33.482 hybrid contribution 0.426 0.072 1.417 1.481 sum -11.444 10.813 -27.990 32.114 Atomic orbital electron populations 1.22369 0.90178 1.04228 1.05984 1.22366 0.97343 0.97300 0.82074 0.85649 1.86179 1.81729 1.38537 1.16745 1.19351 0.96686 0.91495 0.86313 1.20699 1.04650 1.01809 0.92344 1.21279 0.97470 0.94436 0.97021 1.21468 1.01144 0.95647 0.99844 1.21359 0.96379 1.00555 0.91764 1.21569 1.06862 0.93356 1.01577 1.20700 0.79876 0.84352 0.85407 1.90750 1.39208 1.28142 1.87247 1.45709 1.53459 1.32548 1.04077 1.21223 0.98508 0.96403 0.83044 1.20801 1.02377 0.98866 0.89389 1.20588 0.96436 0.98261 0.96941 1.22835 0.97862 1.00503 0.98159 1.19355 0.89822 0.91366 0.91383 1.44404 1.49572 1.37625 1.02253 1.19521 0.98906 1.38038 0.82528 0.91089 1.25817 0.94558 1.02561 1.02137 1.70189 1.01525 1.51362 1.35802 0.85263 0.76619 0.78311 0.79784 1.20098 1.22074 1.20259 1.21159 0.94122 0.92140 0.91706 1.20714 0.97773 0.95282 0.98802 0.87162 0.89249 0.92163 0.86047 0.83435 0.83490 0.83002 0.83163 0.74058 0.93304 0.92228 0.88412 0.89451 0.86800 0.98196 0.92638 0.94147 0.96679 0.92263 0.89606 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.07 71.98 0.65 -0.96 16 2 C 0.07 1.09 2.65 29.85 0.08 1.17 16 3 H 0.13 1.27 6.31 -2.39 -0.02 1.26 16 4 O -0.32 -7.45 9.33 -73.41 -0.69 -8.14 16 5 C 0.11 2.06 6.60 22.51 0.15 2.21 16 6 C -0.18 -3.31 9.99 22.36 0.22 -3.08 16 7 C -0.08 -1.13 10.04 22.26 0.22 -0.90 16 8 C -0.16 -1.75 10.04 22.28 0.22 -1.53 16 9 C -0.08 -0.86 10.04 22.25 0.22 -0.64 16 10 C -0.22 -2.82 8.24 22.37 0.18 -2.63 16 11 C 0.51 11.74 7.23 87.66 0.63 12.37 16 12 O -0.57 -20.19 16.50 16.01 0.26 -19.92 16 13 N -0.70 -11.78 5.45 -463.06 -2.52 -14.30 16 14 C 0.13 2.98 5.66 86.38 0.49 3.46 16 15 C -0.08 -1.58 5.32 29.85 0.16 -1.42 16 16 C -0.12 -3.84 5.11 -15.15 -0.08 -3.91 16 17 C -0.17 -6.63 9.47 27.10 0.26 -6.37 16 18 C 0.21 10.38 5.22 85.42 0.45 10.83 16 19 N -0.61 -31.90 3.01 -703.40 -2.12 -34.02 16 20 C -0.26 -14.61 9.71 84.03 0.82 -13.79 16 21 H 0.07 3.83 7.87 -2.91 -0.02 3.81 16 22 C -0.06 -3.19 5.02 84.86 0.43 -2.77 16 23 N -0.94 -56.99 11.07 21.65 0.24 -56.75 16 24 Si 0.97 45.40 29.58 68.60 2.03 47.43 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 C 0.13 5.67 6.58 86.25 0.57 6.24 16 29 C -0.09 -2.84 5.94 29.65 0.18 -2.67 16 30 H 0.11 0.35 7.56 -2.38 -0.02 0.33 16 31 H 0.09 0.65 6.91 -2.39 -0.02 0.63 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.15 1.16 5.43 -2.91 -0.02 1.15 16 38 H 0.42 3.36 7.89 -92.71 -0.73 2.63 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.52 8.07 -2.39 -0.02 1.50 16 41 H 0.10 1.55 8.11 -2.39 -0.02 1.53 16 42 H 0.09 1.54 7.78 -2.39 -0.02 1.53 16 43 H 0.11 3.75 7.73 -2.91 -0.02 3.72 16 44 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.06 3.12 6.42 -2.39 -0.02 3.11 16 46 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 47 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 49 H 0.09 2.30 8.07 -2.39 -0.02 2.28 16 50 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -80.14 405.56 3.27 -76.87 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.21 Total: 13.22 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.85 Total: -4.39 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -4.40 Total: -105.06 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.42 Total: -28.06 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -80.14 3.27 -76.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161808339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.842 kcal (2) G-P(sol) polarization free energy of solvation -80.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds