Wall clock time and date at job start Wed Apr 1 2020 03:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47366 * 2 1 4 4 O 1.42900 * 109.46959 * 120.00350 * 2 1 3 5 5 C 1.35904 * 116.99892 * 275.40382 * 4 2 1 6 6 C 1.38731 * 120.05426 * 4.97350 * 5 4 2 7 7 C 1.38149 * 119.94474 * 179.74230 * 6 5 4 8 8 C 1.38271 * 120.05254 * 0.50146 * 7 6 5 9 9 C 1.38260 * 120.11130 * 359.77099 * 8 7 6 10 10 C 1.38148 * 120.05948 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.46985 * 240.00001 * 2 1 3 12 12 O 1.21286 * 119.99865 * 245.00090 * 11 2 1 13 13 N 1.34773 * 120.00366 * 65.00144 * 11 2 1 14 14 C 1.46498 * 120.00419 * 180.02562 * 13 11 2 15 15 C 1.53005 * 109.46989 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.46741 * 180.02562 * 15 14 13 17 17 C 1.29447 * 117.69967 * 95.00220 * 16 15 14 18 18 C 1.50320 * 123.65639 * 180.85928 * 17 16 15 19 19 N 1.47016 * 109.16206 * 349.01580 * 18 17 16 20 20 C 1.36935 * 121.37331 * 222.96981 * 19 18 17 21 21 H 1.07996 * 120.00149 * 153.55629 * 20 19 18 22 22 C 1.38815 * 120.00011 * 333.55778 * 20 19 18 23 23 N 1.31618 * 120.00340 * 348.89254 * 22 20 19 24 24 Si 1.86806 * 119.99815 * 168.90029 * 22 20 19 25 25 H 1.48493 * 109.47263 * 59.99935 * 24 22 20 26 26 H 1.48501 * 109.47081 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46928 * 299.99665 * 24 22 20 28 28 C 1.47334 * 117.24703 * 42.95080 * 19 18 17 29 29 C 1.49977 * 117.68964 * 274.73450 * 16 15 14 30 30 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47248 * 59.99820 * 1 2 3 32 32 H 1.09000 * 109.46987 * 299.99738 * 1 2 3 33 33 H 1.07997 * 120.02660 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.97218 * 180.23098 * 7 6 5 35 35 H 1.07996 * 119.94147 * 179.74790 * 8 7 6 36 36 H 1.08001 * 119.97224 * 179.97438 * 9 8 7 37 37 H 1.07992 * 120.03254 * 179.97438 * 10 9 8 38 38 H 0.97003 * 119.99448 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.46941 * 299.99738 * 14 13 11 40 40 H 1.08994 * 109.46989 * 59.99897 * 14 13 11 41 41 H 1.09003 * 109.46945 * 299.99589 * 15 14 13 42 42 H 1.08994 * 109.47460 * 60.00038 * 15 14 13 43 43 H 1.08000 * 118.17154 * 0.87039 * 17 16 15 44 44 H 1.08999 * 109.52639 * 108.92157 * 18 17 16 45 45 H 1.08994 * 109.52302 * 229.11437 * 18 17 16 46 46 H 0.96996 * 120.00256 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.77962 * 57.81145 * 28 19 18 48 48 H 1.09002 * 109.77341 * 178.61626 * 28 19 18 49 49 H 1.08996 * 109.31500 * 281.28966 * 29 16 15 50 50 H 1.08999 * 109.31550 * 40.72178 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 2.1044 0.0604 2.3062 6 6 1.6533 1.3721 2.3286 7 6 1.7493 2.1146 3.4897 8 6 2.3038 1.5547 4.6259 9 6 2.7592 0.2494 4.6045 10 6 2.6607 -0.4990 3.4474 11 6 2.0322 -0.7104 -1.2304 12 8 2.6529 -1.7467 -1.1214 13 7 1.7918 -0.1942 -2.4520 14 6 2.2797 -0.8851 -3.6482 15 6 1.8755 -0.0945 -4.8942 16 6 2.3768 -0.8055 -6.1247 17 6 1.5609 -1.6072 -6.7308 18 6 1.9259 -2.3973 -7.9564 19 7 3.2134 -1.9143 -8.4763 20 6 3.4144 -1.7237 -9.8173 21 1 4.1448 -1.0043 -10.1570 22 6 2.6795 -2.4553 -10.7401 23 7 1.9539 -3.4784 -10.3412 24 14 2.7206 -1.9879 -12.5483 25 1 4.1153 -2.0748 -13.0505 26 1 1.8583 -2.9186 -13.3199 27 1 2.2211 -0.5990 -12.7119 28 6 4.2782 -1.6432 -7.4947 29 6 3.7839 -0.5298 -6.5644 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.2241 1.8113 1.4402 34 1 1.3949 3.1346 3.5087 35 1 2.3817 2.1381 5.5314 36 1 3.1923 -0.1856 5.4931 37 1 3.0169 -1.5183 3.4311 38 1 1.2958 0.6348 -2.5391 39 1 3.3660 -0.9637 -3.6047 40 1 1.8446 -1.8834 -3.6939 41 1 0.7892 -0.0154 -4.9379 42 1 2.3109 0.9037 -4.8483 43 1 0.5622 -1.7143 -6.3338 44 1 2.0105 -3.4528 -7.6976 45 1 1.1549 -2.2682 -8.7159 46 1 1.4406 -3.9898 -10.9861 47 1 4.4872 -2.5447 -6.9188 48 1 5.1812 -1.3169 -8.0109 49 1 3.8170 0.4249 -7.0894 50 1 4.4318 -0.4795 -5.6893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161808340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:46 Heat of formation + Delta-G solvation = -11.484362 kcal Electronic energy + Delta-G solvation = -28722.628200 eV Core-core repulsion = 24716.020810 eV Total energy + Delta-G solvation = -4006.607390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.97046 -39.62414 -38.00392 -37.56249 -35.47292 -33.74965 -32.64432 -31.39694 -31.09641 -30.05225 -29.80001 -28.63350 -25.75236 -24.80104 -23.36762 -22.98026 -22.61070 -22.16368 -21.01010 -20.42178 -18.82044 -17.71454 -17.58037 -16.66267 -16.19373 -16.15638 -15.81525 -15.44512 -15.25961 -14.96335 -14.84069 -14.32052 -14.08274 -13.90327 -13.82144 -13.59563 -13.54057 -13.31837 -12.97448 -12.83431 -12.63093 -12.26094 -12.21860 -12.01885 -11.96855 -11.61635 -11.48760 -11.42868 -11.20324 -11.02525 -10.86617 -10.74089 -10.34047 -10.27161 -9.97837 -9.82306 -9.54192 -9.40976 -9.25241 -8.65860 -8.59731 -7.92662 -6.67952 -5.77446 -3.19656 0.92353 1.04120 2.25699 2.33177 2.90894 3.30536 3.38978 3.39034 3.44122 3.45096 4.15305 4.31191 4.42247 4.45343 4.49792 4.49999 4.72559 4.91297 4.97223 5.06860 5.07694 5.12717 5.17950 5.24346 5.26866 5.42032 5.54904 5.56838 5.60308 5.63190 5.77344 5.89956 5.98058 5.99283 6.01009 6.13276 6.13697 6.20066 6.25044 6.35271 6.39828 6.56500 6.80138 6.92178 6.96877 7.21762 7.25191 7.34855 7.41950 7.75685 7.89247 7.95165 8.42104 9.22454 9.84129 10.43946 11.32690 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.001534 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.417294 B =18249.641505 C =18289.423552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 H 0.098 0.902 4 O -0.284 6.284 5 C 0.131 3.869 6 C -0.214 4.214 7 C -0.080 4.080 8 C -0.161 4.161 9 C -0.080 4.080 10 C -0.150 4.150 11 C 0.514 3.486 12 O -0.514 6.514 13 N -0.724 5.724 14 C 0.125 3.875 15 C -0.091 4.091 16 C -0.145 4.145 17 C -0.145 4.145 18 C 0.197 3.803 19 N -0.595 5.595 20 C -0.247 4.247 21 H 0.067 0.933 22 C 0.000 4.000 23 N -0.911 5.911 24 Si 0.907 3.093 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.143 3.857 29 C -0.091 4.091 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.399 0.601 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.039 0.961 45 H 0.091 0.909 46 H 0.254 0.746 47 H 0.024 0.976 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 12.844 27.948 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 H 0.116 0.884 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.232 4.232 7 C -0.098 4.098 8 C -0.179 4.179 9 C -0.098 4.098 10 C -0.168 4.168 11 C 0.298 3.702 12 O -0.388 6.388 13 N -0.378 5.378 14 C 0.002 3.998 15 C -0.129 4.129 16 C -0.145 4.145 17 C -0.164 4.164 18 C 0.072 3.928 19 N -0.319 5.319 20 C -0.376 4.376 21 H 0.084 0.916 22 C -0.198 4.198 23 N -0.556 5.556 24 Si 0.736 3.264 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.016 3.984 29 C -0.130 4.130 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.042 0.958 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.472 11.733 27.846 30.415 hybrid contribution -0.480 0.863 -1.019 1.419 sum -3.952 12.596 26.827 29.899 Atomic orbital electron populations 1.22343 0.92456 1.04700 1.03894 1.22208 0.95851 0.96981 0.84274 0.88416 1.86234 1.80854 1.37016 1.15553 1.19107 0.95259 0.90362 0.86675 1.21316 1.07348 0.94348 1.00222 1.20962 0.97179 0.99433 0.92255 1.21089 1.02134 0.95913 0.98772 1.21003 0.97667 0.93999 0.97118 1.20517 1.03516 1.01608 0.91185 1.20017 0.80387 0.85709 0.84066 1.90776 1.38916 1.22785 1.86276 1.45971 1.58235 1.27955 1.05627 1.21503 1.00036 0.96283 0.81931 1.20908 1.00702 0.98701 0.92539 1.20216 0.97038 1.00975 0.96322 1.23153 0.97551 0.96890 0.98841 1.19719 0.89082 0.93474 0.90559 1.44093 1.07554 1.78061 1.02152 1.19136 1.21297 1.15984 0.81190 0.91564 1.25070 1.00865 0.95783 0.98078 1.69969 1.33365 1.18872 1.33414 0.86304 0.77553 0.77601 0.84894 1.20921 1.21609 1.21096 1.20997 0.91917 0.94441 0.91046 1.20793 0.92907 1.00639 0.98669 0.90450 0.90119 0.90538 0.85272 0.85742 0.85895 0.85272 0.84958 0.76669 0.91043 0.91017 0.91481 0.91422 0.89102 0.94376 0.89100 0.93558 0.95780 0.92568 0.91949 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.12 37.16 0.34 -0.80 16 2 C 0.07 0.59 2.64 -27.89 -0.07 0.52 16 3 H 0.10 0.63 6.31 -51.93 -0.33 0.30 16 4 O -0.28 -3.31 9.34 -39.30 -0.37 -3.67 16 5 C 0.13 1.29 6.60 -39.22 -0.26 1.03 16 6 C -0.21 -1.63 8.23 -39.43 -0.32 -1.96 16 7 C -0.08 -0.53 10.04 -39.60 -0.40 -0.93 16 8 C -0.16 -1.05 10.04 -39.56 -0.40 -1.45 16 9 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 10 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 11 C 0.51 6.19 7.18 -10.99 -0.08 6.12 16 12 O -0.51 -8.80 16.51 -14.31 -0.24 -9.03 16 13 N -0.72 -7.09 5.52 -60.29 -0.33 -7.42 16 14 C 0.12 1.55 5.66 -4.04 -0.02 1.53 16 15 C -0.09 -1.11 5.32 -27.88 -0.15 -1.26 16 16 C -0.14 -2.44 5.11 -100.98 -0.52 -2.96 16 17 C -0.14 -2.77 9.47 -35.78 -0.34 -3.11 16 18 C 0.20 4.73 5.19 -5.10 -0.03 4.70 16 19 N -0.60 -15.08 3.00 -173.57 -0.52 -15.60 16 20 C -0.25 -6.80 9.71 -15.06 -0.15 -6.94 16 21 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 22 C 0.00 0.00 5.09 -17.43 -0.09 -0.09 16 23 N -0.91 -26.39 10.99 55.49 0.61 -25.78 16 24 Si 0.91 21.72 29.57 -169.99 -5.03 16.70 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.14 3.02 6.59 -3.44 -0.02 3.00 16 29 C -0.09 -1.59 5.95 -28.08 -0.17 -1.76 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.34 7.92 -51.93 -0.41 -0.07 16 32 H 0.08 0.42 6.90 -51.93 -0.36 0.06 16 33 H 0.13 0.72 5.43 -52.49 -0.29 0.44 16 34 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.40 2.50 8.26 -40.82 -0.34 2.17 16 39 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 42 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 43 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 2.42 6.45 -51.93 -0.34 2.08 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 406.39 15.07 6.12 6.12 Total: -1.00 -33.98 406.39 -11.10 -45.09 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.89 Total: 0.66 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.46 Total: -7.07 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.24 Total: -48.80 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.60 Total: -12.71 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.98 -11.10 -45.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161808340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.601 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds