Wall clock time and date at job start Wed Apr 1 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47366 * 2 1 4 4 O 1.42900 * 109.46959 * 120.00350 * 2 1 3 5 5 C 1.35904 * 116.99892 * 275.40382 * 4 2 1 6 6 C 1.38731 * 120.05426 * 4.97350 * 5 4 2 7 7 C 1.38149 * 119.94474 * 179.74230 * 6 5 4 8 8 C 1.38271 * 120.05254 * 0.50146 * 7 6 5 9 9 C 1.38260 * 120.11130 * 359.77099 * 8 7 6 10 10 C 1.38148 * 120.05948 * 359.97438 * 9 8 7 11 11 C 1.50696 * 109.46985 * 240.00001 * 2 1 3 12 12 O 1.21286 * 119.99865 * 245.00090 * 11 2 1 13 13 N 1.34773 * 120.00366 * 65.00144 * 11 2 1 14 14 C 1.46498 * 120.00419 * 180.02562 * 13 11 2 15 15 C 1.53005 * 109.46989 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.46741 * 180.02562 * 15 14 13 17 17 C 1.29447 * 117.69967 * 95.00220 * 16 15 14 18 18 C 1.50320 * 123.65639 * 180.85928 * 17 16 15 19 19 N 1.47016 * 109.16206 * 349.01580 * 18 17 16 20 20 C 1.36935 * 121.37331 * 222.96981 * 19 18 17 21 21 H 1.07996 * 120.00149 * 153.55629 * 20 19 18 22 22 C 1.38815 * 120.00011 * 333.55778 * 20 19 18 23 23 N 1.31618 * 120.00340 * 348.89254 * 22 20 19 24 24 Si 1.86806 * 119.99815 * 168.90029 * 22 20 19 25 25 H 1.48493 * 109.47263 * 59.99935 * 24 22 20 26 26 H 1.48501 * 109.47081 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46928 * 299.99665 * 24 22 20 28 28 C 1.47334 * 117.24703 * 42.95080 * 19 18 17 29 29 C 1.49977 * 117.68964 * 274.73450 * 16 15 14 30 30 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47248 * 59.99820 * 1 2 3 32 32 H 1.09000 * 109.46987 * 299.99738 * 1 2 3 33 33 H 1.07997 * 120.02660 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.97218 * 180.23098 * 7 6 5 35 35 H 1.07996 * 119.94147 * 179.74790 * 8 7 6 36 36 H 1.08001 * 119.97224 * 179.97438 * 9 8 7 37 37 H 1.07992 * 120.03254 * 179.97438 * 10 9 8 38 38 H 0.97003 * 119.99448 * 0.02562 * 13 11 2 39 39 H 1.09003 * 109.46941 * 299.99738 * 14 13 11 40 40 H 1.08994 * 109.46989 * 59.99897 * 14 13 11 41 41 H 1.09003 * 109.46945 * 299.99589 * 15 14 13 42 42 H 1.08994 * 109.47460 * 60.00038 * 15 14 13 43 43 H 1.08000 * 118.17154 * 0.87039 * 17 16 15 44 44 H 1.08999 * 109.52639 * 108.92157 * 18 17 16 45 45 H 1.08994 * 109.52302 * 229.11437 * 18 17 16 46 46 H 0.96996 * 120.00256 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.77962 * 57.81145 * 28 19 18 48 48 H 1.09002 * 109.77341 * 178.61626 * 28 19 18 49 49 H 1.08996 * 109.31500 * 281.28966 * 29 16 15 50 50 H 1.08999 * 109.31550 * 40.72178 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 2.1044 0.0604 2.3062 6 6 1.6533 1.3721 2.3286 7 6 1.7493 2.1146 3.4897 8 6 2.3038 1.5547 4.6259 9 6 2.7592 0.2494 4.6045 10 6 2.6607 -0.4990 3.4474 11 6 2.0322 -0.7104 -1.2304 12 8 2.6529 -1.7467 -1.1214 13 7 1.7918 -0.1942 -2.4520 14 6 2.2797 -0.8851 -3.6482 15 6 1.8755 -0.0945 -4.8942 16 6 2.3768 -0.8055 -6.1247 17 6 1.5609 -1.6072 -6.7308 18 6 1.9259 -2.3973 -7.9564 19 7 3.2134 -1.9143 -8.4763 20 6 3.4144 -1.7237 -9.8173 21 1 4.1448 -1.0043 -10.1570 22 6 2.6795 -2.4553 -10.7401 23 7 1.9539 -3.4784 -10.3412 24 14 2.7206 -1.9879 -12.5483 25 1 4.1153 -2.0748 -13.0505 26 1 1.8583 -2.9186 -13.3199 27 1 2.2211 -0.5990 -12.7119 28 6 4.2782 -1.6432 -7.4947 29 6 3.7839 -0.5298 -6.5644 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.2241 1.8113 1.4402 34 1 1.3949 3.1346 3.5087 35 1 2.3817 2.1381 5.5314 36 1 3.1923 -0.1856 5.4931 37 1 3.0169 -1.5183 3.4311 38 1 1.2958 0.6348 -2.5391 39 1 3.3660 -0.9637 -3.6047 40 1 1.8446 -1.8834 -3.6939 41 1 0.7892 -0.0154 -4.9379 42 1 2.3109 0.9037 -4.8483 43 1 0.5622 -1.7143 -6.3338 44 1 2.0105 -3.4528 -7.6976 45 1 1.1549 -2.2682 -8.7159 46 1 1.4406 -3.9898 -10.9861 47 1 4.4872 -2.5447 -6.9188 48 1 5.1812 -1.3169 -8.0109 49 1 3.8170 0.4249 -7.0894 50 1 4.4318 -0.4795 -5.6893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161808340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:45 Heat of formation + Delta-G solvation = -31.435226 kcal Electronic energy + Delta-G solvation = -28723.493334 eV Core-core repulsion = 24716.020810 eV Total energy + Delta-G solvation = -4007.472524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.69465 -40.45814 -39.45794 -38.29132 -36.75471 -35.22011 -33.61484 -32.84447 -31.75143 -31.45477 -30.62980 -30.00302 -27.25236 -25.76912 -24.65287 -24.07717 -23.62540 -22.98646 -22.47993 -21.34682 -19.47105 -19.42311 -18.48121 -17.69988 -17.23895 -17.05015 -16.88515 -16.69025 -16.27742 -16.12390 -15.72423 -15.50322 -15.36496 -15.18367 -15.00630 -14.77367 -14.38774 -14.28672 -14.09877 -13.88970 -13.60502 -13.39231 -13.30443 -13.20814 -12.88953 -12.83374 -12.73369 -12.59285 -12.44296 -12.36482 -12.20738 -12.09365 -11.89410 -11.74170 -11.68478 -11.24229 -10.90206 -10.69117 -10.21623 -9.93988 -9.48571 -9.18846 -8.71411 -7.87480 -5.33419 0.39847 0.47972 1.35079 1.42627 1.46726 1.49134 1.56024 1.64498 2.50789 2.55780 2.85240 3.29741 3.46975 3.66975 3.70003 3.84538 3.93890 3.97164 4.01015 4.08955 4.12452 4.29328 4.29872 4.40908 4.52227 4.55532 4.58197 4.62630 4.65152 4.69138 4.76864 4.86604 4.91401 4.97521 5.05942 5.08934 5.11766 5.18434 5.24399 5.31913 5.35914 5.42291 5.48915 5.52167 5.60420 5.61858 5.84407 5.88261 6.28908 6.33536 6.35119 6.50037 7.11685 7.13934 7.83021 8.38873 9.20592 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.001534 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.417294 B =18249.641505 C =18289.423552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.129 0.871 4 O -0.319 6.319 5 C 0.106 3.894 6 C -0.215 4.215 7 C -0.082 4.082 8 C -0.163 4.163 9 C -0.084 4.084 10 C -0.176 4.176 11 C 0.511 3.489 12 O -0.575 6.575 13 N -0.704 5.704 14 C 0.132 3.868 15 C -0.077 4.077 16 C -0.123 4.123 17 C -0.174 4.174 18 C 0.206 3.794 19 N -0.615 5.615 20 C -0.260 4.260 21 H 0.070 0.930 22 C -0.055 4.055 23 N -0.942 5.942 24 Si 0.974 3.026 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.276 1.276 28 C 0.134 3.866 29 C -0.087 4.087 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.421 0.579 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.001 0.999 45 H 0.056 0.944 46 H 0.250 0.750 47 H 0.016 0.984 48 H 0.058 0.942 49 H 0.070 0.930 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 16.960 29.606 34.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.010 3.990 3 H 0.146 0.854 4 O -0.232 6.232 5 C 0.061 3.939 6 C -0.233 4.233 7 C -0.100 4.100 8 C -0.181 4.181 9 C -0.102 4.102 10 C -0.195 4.195 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.358 5.358 14 C 0.008 3.992 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.193 4.193 18 C 0.081 3.919 19 N -0.339 5.339 20 C -0.390 4.390 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.589 5.589 24 Si 0.801 3.199 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.202 1.202 28 C 0.009 3.991 29 C -0.126 4.126 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.139 0.861 38 H 0.260 0.740 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.018 0.982 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.032 15.915 29.524 33.782 hybrid contribution -0.207 -0.399 -1.441 1.509 sum -4.239 15.516 28.083 32.363 Atomic orbital electron populations 1.22360 0.90429 1.04059 1.05974 1.22349 0.97178 0.97389 0.82070 0.85409 1.86185 1.81662 1.38693 1.16688 1.19356 0.96748 0.91491 0.86264 1.21568 1.06863 0.93347 1.01556 1.21365 0.96364 1.00574 0.91721 1.21469 1.01107 0.95664 0.99855 1.21273 0.97469 0.94439 0.97019 1.20698 1.04755 1.01754 0.92312 1.20697 0.79243 0.84996 0.85402 1.90751 1.41798 1.25592 1.87186 1.45705 1.57542 1.28286 1.04264 1.21221 0.99178 0.95697 0.83064 1.20802 1.02114 0.99036 0.89467 1.20587 0.96079 0.98843 0.96835 1.22848 0.99661 0.98804 0.97974 1.19358 0.88000 0.92631 0.91878 1.44382 1.08985 1.78197 1.02339 1.19511 1.21110 1.15802 0.82619 0.91187 1.25886 1.00913 0.95885 1.02292 1.70167 1.34293 1.20034 1.34411 0.85248 0.77593 0.77313 0.79714 1.20128 1.22036 1.20187 1.21195 0.91353 0.95566 0.91004 1.20747 0.93820 0.99028 0.98968 0.92481 0.87270 0.89140 0.83129 0.82973 0.83490 0.83454 0.86084 0.74050 0.92338 0.93220 0.89373 0.88519 0.86784 0.98171 0.92612 0.94143 0.96618 0.92324 0.91162 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.12 71.98 0.66 -1.12 16 2 C 0.07 1.11 2.64 29.85 0.08 1.19 16 3 H 0.13 1.21 6.31 -2.39 -0.02 1.19 16 4 O -0.32 -7.46 9.34 -73.48 -0.69 -8.15 16 5 C 0.11 2.03 6.60 22.51 0.15 2.18 16 6 C -0.22 -2.75 8.23 22.37 0.18 -2.56 16 7 C -0.08 -0.83 10.04 22.26 0.22 -0.61 16 8 C -0.16 -1.71 10.04 22.28 0.22 -1.48 16 9 C -0.08 -1.11 10.04 22.25 0.22 -0.89 16 10 C -0.18 -3.28 9.99 22.37 0.22 -3.05 16 11 C 0.51 11.76 7.18 87.66 0.63 12.39 16 12 O -0.57 -20.22 16.51 15.94 0.26 -19.95 16 13 N -0.70 -11.82 5.52 -463.06 -2.55 -14.38 16 14 C 0.13 2.99 5.66 86.38 0.49 3.48 16 15 C -0.08 -1.58 5.32 29.85 0.16 -1.42 16 16 C -0.12 -3.89 5.11 -15.13 -0.08 -3.96 16 17 C -0.17 -6.61 9.47 27.11 0.26 -6.35 16 18 C 0.21 10.41 5.19 85.42 0.44 10.86 16 19 N -0.61 -31.96 3.00 -703.04 -2.11 -34.07 16 20 C -0.26 -14.64 9.71 84.03 0.82 -13.82 16 21 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 22 C -0.06 -3.13 5.09 84.86 0.43 -2.70 16 23 N -0.94 -56.93 10.99 21.65 0.24 -56.69 16 24 Si 0.97 45.39 29.57 68.60 2.03 47.41 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 28 C 0.13 5.70 6.59 86.32 0.57 6.27 16 29 C -0.09 -2.85 5.95 29.72 0.18 -2.68 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.47 7.92 -2.39 -0.02 0.45 16 32 H 0.09 0.71 6.90 -2.39 -0.02 0.70 16 33 H 0.15 1.11 5.43 -2.91 -0.02 1.09 16 34 H 0.15 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.42 3.37 8.26 -92.71 -0.77 2.61 16 39 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.55 7.78 -2.39 -0.02 1.53 16 42 H 0.10 1.55 8.11 -2.39 -0.02 1.53 16 43 H 0.11 3.74 7.73 -2.91 -0.02 3.72 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.06 3.14 6.45 -2.39 -0.02 3.13 16 46 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 49 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 50 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -80.03 406.39 3.20 -76.83 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.17 Total: 13.27 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.85 Total: -4.27 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -4.43 Total: -105.14 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.42 Total: -28.10 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -80.03 3.20 -76.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161808340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.392 kcal (2) G-P(sol) polarization free energy of solvation -80.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds