Wall clock time and date at job start Wed Apr 1 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.47587 * 2 1 4 4 O 1.42906 * 109.47166 * 119.99963 * 2 1 3 5 5 C 1.42902 * 113.99692 * 270.00093 * 4 2 1 6 6 C 1.50697 * 109.46872 * 179.97438 * 5 4 2 7 7 C 1.38238 * 119.99927 * 269.72415 * 6 5 4 8 8 C 1.38231 * 120.00105 * 179.78988 * 7 6 5 9 9 C 1.38240 * 119.99910 * 0.43657 * 8 7 6 10 10 C 1.38237 * 119.99923 * 359.82068 * 9 8 7 11 11 C 1.38230 * 120.00115 * 359.96944 * 10 9 8 12 12 C 1.50703 * 109.47209 * 239.99777 * 2 1 3 13 13 O 1.21278 * 119.99943 * 256.59149 * 12 2 1 14 14 N 1.34769 * 119.99963 * 76.58591 * 12 2 1 15 15 C 1.47411 * 125.58685 * 355.26793 * 14 12 2 16 16 C 1.54867 * 104.81412 * 204.44427 * 15 14 12 17 17 C 1.55167 * 101.73557 * 322.77053 * 16 15 14 18 18 H 1.08997 * 113.26014 * 158.95877 * 17 16 15 19 19 C 1.53759 * 108.31203 * 285.39055 * 17 16 15 20 20 N 1.46588 * 108.11075 * 125.22103 * 19 17 16 21 21 C 1.36943 * 125.30734 * 181.28354 * 20 19 17 22 22 H 1.07999 * 120.00234 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99405 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00557 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99812 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47237 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47569 * 119.99734 * 25 23 21 28 28 H 1.48499 * 109.46763 * 239.99629 * 25 23 21 29 29 C 1.46707 * 109.37509 * 1.55510 * 20 19 17 30 30 C 1.48850 * 125.34082 * 175.33129 * 14 12 2 31 31 H 1.08999 * 111.95160 * 56.52721 * 30 14 12 32 32 H 1.09001 * 109.47406 * 65.98708 * 1 2 3 33 33 H 1.08999 * 109.47624 * 185.99294 * 1 2 3 34 34 H 1.09007 * 109.47211 * 305.99188 * 1 2 3 35 35 H 1.08999 * 109.47045 * 299.99480 * 5 4 2 36 36 H 1.09002 * 109.47300 * 59.99954 * 5 4 2 37 37 H 1.07997 * 119.99805 * 359.97438 * 7 6 5 38 38 H 1.07999 * 120.00649 * 180.27773 * 8 7 6 39 39 H 1.07997 * 120.00298 * 179.83466 * 9 8 7 40 40 H 1.07995 * 120.00001 * 179.97438 * 10 9 8 41 41 H 1.07999 * 120.00555 * 180.02562 * 11 10 9 42 42 H 1.09005 * 110.36844 * 85.61525 * 15 14 12 43 43 H 1.08995 * 110.37307 * 323.28234 * 15 14 12 44 44 H 1.09003 * 110.97425 * 204.65949 * 16 15 14 45 45 H 1.08991 * 110.97802 * 80.88357 * 16 15 14 46 46 H 1.08998 * 109.74064 * 5.55132 * 19 17 16 47 47 H 1.09000 * 109.74649 * 244.90044 * 19 17 16 48 48 H 0.97001 * 120.00583 * 180.02562 * 24 23 21 49 49 H 1.08995 * 109.98913 * 101.13958 * 29 20 19 50 50 H 1.09003 * 109.98127 * 222.44477 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7002 -0.6283 3.4614 7 6 1.8009 -1.1948 4.3453 8 6 2.2595 -1.9426 5.4136 9 6 3.6177 -2.1165 5.6031 10 6 4.5172 -1.5456 4.7223 11 6 4.0585 -0.8014 3.6515 12 6 2.0323 -0.7105 -1.2305 13 8 2.4641 -1.8405 -1.1444 14 7 2.0016 -0.0901 -2.4265 15 6 1.4159 1.2368 -2.6899 16 6 1.0621 1.2212 -4.1975 17 6 2.2489 0.4176 -4.7919 18 1 2.0278 -0.0199 -5.7654 19 6 3.4896 1.3258 -4.8037 20 7 4.5661 0.6359 -4.0868 21 6 5.8200 1.1403 -3.8660 22 1 6.0791 2.1226 -4.2323 23 6 6.7578 0.3888 -3.1713 24 7 6.4418 -0.8082 -2.7244 25 14 8.4680 1.0769 -2.8695 26 1 8.5692 2.4320 -3.4684 27 1 8.7168 1.1615 -1.4080 28 1 9.4778 0.1841 -3.4926 29 6 4.0926 -0.6816 -3.6484 30 6 2.5544 -0.6383 -3.6952 31 1 2.1246 -1.6093 -3.9409 32 1 -0.3634 0.4182 -0.9387 33 1 -0.3634 -1.0220 0.1073 34 1 -0.3634 0.6040 0.8315 35 1 2.9319 0.9513 2.0450 36 1 1.2537 0.6547 2.5589 37 1 0.7399 -1.0556 4.1995 38 1 1.5568 -2.3890 6.1017 39 1 3.9762 -2.6985 6.4393 40 1 5.5783 -1.6811 4.8706 41 1 4.7611 -0.3557 2.9630 42 1 2.1429 2.0211 -2.4788 43 1 0.5169 1.3804 -2.0906 44 1 1.0343 2.2329 -4.6022 45 1 0.1169 0.7071 -4.3712 46 1 3.2607 2.2682 -4.3062 47 1 3.7958 1.5175 -5.8321 48 1 7.0970 -1.3332 -2.2387 49 1 4.4670 -1.4544 -4.3197 50 1 4.4278 -0.8780 -2.6299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189253047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:42 Heat of formation + Delta-G solvation = -34.115767 kcal Electronic energy + Delta-G solvation = -31040.166860 eV Core-core repulsion = 27032.578098 eV Total energy + Delta-G solvation = -4007.588761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.59365 -40.39875 -39.63750 -38.22994 -36.50323 -34.21944 -33.34809 -32.41022 -31.84512 -31.78043 -30.35121 -28.04202 -27.18698 -26.59883 -25.31464 -23.53811 -23.39707 -22.46828 -22.30511 -20.95236 -20.10350 -18.97288 -18.40331 -17.75697 -17.57769 -17.31273 -16.84757 -16.72939 -16.27751 -15.87162 -15.78858 -15.61629 -15.13144 -14.80748 -14.60637 -14.33939 -14.31449 -14.07212 -13.87795 -13.82690 -13.57193 -13.45137 -13.20038 -13.14311 -12.98960 -12.90112 -12.80205 -12.46612 -12.37758 -12.05651 -11.97483 -11.87104 -11.86102 -11.85065 -11.56799 -11.38502 -11.02428 -10.78326 -10.44908 -9.87307 -9.80733 -9.59225 -8.88984 -7.80864 -5.24611 0.27270 0.44914 1.39435 1.41313 1.51906 1.56287 1.87283 2.45291 2.63954 3.12192 3.30886 3.37916 3.58900 3.69852 3.77016 3.81851 3.83604 3.93546 3.98620 4.08520 4.11867 4.22844 4.23522 4.30541 4.32354 4.46520 4.51533 4.54628 4.59509 4.71161 4.71951 4.73560 4.81215 4.86486 4.95771 5.02381 5.10181 5.10890 5.17446 5.21973 5.30983 5.36599 5.45150 5.49658 5.55106 5.55447 5.62432 5.83673 6.03324 6.08274 6.26305 6.63280 7.06140 7.23708 7.78325 8.39426 9.21907 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.003724 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.853538 B = 7517.079689 C = 9859.975765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.079 3.921 3 H 0.096 0.904 4 O -0.385 6.385 5 C 0.098 3.902 6 C -0.108 4.108 7 C -0.105 4.105 8 C -0.127 4.127 9 C -0.118 4.118 10 C -0.136 4.136 11 C -0.125 4.125 12 C 0.515 3.485 13 O -0.580 6.580 14 N -0.602 5.602 15 C 0.089 3.911 16 C -0.104 4.104 17 C -0.099 4.099 18 H 0.120 0.880 19 C 0.135 3.865 20 N -0.619 5.619 21 C -0.235 4.235 22 H 0.089 0.911 23 C -0.071 4.071 24 N -0.950 5.950 25 Si 0.976 3.024 26 H -0.257 1.257 27 H -0.297 1.297 28 H -0.294 1.294 29 C 0.166 3.834 30 C 0.118 3.882 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.041 0.959 47 H 0.026 0.974 48 H 0.240 0.760 49 H -0.022 1.022 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.345 6.814 10.388 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.114 0.886 4 O -0.304 6.304 5 C 0.022 3.978 6 C -0.108 4.108 7 C -0.122 4.122 8 C -0.144 4.144 9 C -0.136 4.136 10 C -0.154 4.154 11 C -0.143 4.143 12 C 0.304 3.696 13 O -0.459 6.459 14 N -0.336 5.336 15 C -0.033 4.033 16 C -0.141 4.141 17 C -0.118 4.118 18 H 0.138 0.862 19 C 0.010 3.990 20 N -0.345 5.345 21 C -0.364 4.364 22 H 0.106 0.894 23 C -0.264 4.264 24 N -0.600 5.600 25 Si 0.805 3.195 26 H -0.181 1.181 27 H -0.224 1.224 28 H -0.222 1.222 29 C 0.040 3.960 30 C 0.014 3.986 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.120 0.880 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.050 0.950 49 H -0.004 1.004 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.908 5.984 10.596 21.652 hybrid contribution 2.070 -0.180 -0.059 2.078 sum -15.839 5.804 10.537 19.889 Atomic orbital electron populations 1.22242 0.90148 1.03857 1.05287 1.21977 0.97325 0.95590 0.83249 0.88620 1.88105 1.87129 1.35509 1.19671 1.21596 1.01092 0.91353 0.83748 1.19778 0.93804 1.00968 0.96291 1.21348 1.00174 0.96424 0.94302 1.21543 0.96259 0.98504 0.98127 1.21562 0.93557 0.98937 0.99527 1.21407 1.01015 0.97921 0.95046 1.21268 0.95604 0.99404 0.98055 1.20830 0.78110 0.86129 0.84544 1.90683 1.48084 1.21246 1.85930 1.48858 1.57675 1.20173 1.06919 1.22755 0.98511 0.82994 0.98994 1.22834 0.97059 1.02165 0.92064 1.23081 0.95818 0.94859 0.98024 0.86216 1.21473 0.87525 0.95029 0.94940 1.44462 1.10146 1.15460 1.64424 1.19500 0.87870 1.00154 1.28902 0.89351 1.25722 1.02505 0.96891 1.01268 1.70257 1.34089 1.12310 1.43349 0.85029 0.79490 0.78121 0.76868 1.18051 1.22431 1.22169 1.21253 0.89639 0.86163 0.98950 1.22832 0.94057 0.97624 0.84077 0.90378 0.88717 0.92318 0.88196 0.92894 0.88796 0.83792 0.82854 0.83295 0.84860 0.87654 0.92329 0.86882 0.86848 0.87967 0.94100 0.95583 0.95006 1.00380 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.35 71.98 0.67 -2.42 16 2 C 0.08 2.41 2.48 29.85 0.07 2.48 16 3 H 0.10 2.54 7.53 -2.39 -0.02 2.52 16 4 O -0.38 -13.60 9.56 -130.49 -1.25 -14.85 16 5 C 0.10 2.61 5.87 71.24 0.42 3.02 16 6 C -0.11 -3.01 5.51 -19.86 -0.11 -3.12 16 7 C -0.10 -2.34 9.70 22.27 0.22 -2.12 16 8 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 9 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 10 C -0.14 -3.43 10.05 22.27 0.22 -3.20 16 11 C -0.12 -3.76 9.70 22.27 0.22 -3.54 16 12 C 0.52 21.27 6.77 87.66 0.59 21.86 16 13 O -0.58 -31.10 16.61 15.47 0.26 -30.85 16 14 N -0.60 -21.79 3.09 -780.25 -2.41 -24.20 16 15 C 0.09 2.14 5.97 86.84 0.52 2.65 16 16 C -0.10 -2.00 6.31 31.97 0.20 -1.80 16 17 C -0.10 -2.95 4.19 -9.01 -0.04 -2.99 16 18 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 19 C 0.13 5.16 6.41 86.62 0.56 5.71 16 20 N -0.62 -32.54 3.38 -697.93 -2.36 -34.90 16 21 C -0.24 -13.52 10.25 84.03 0.86 -12.66 16 22 H 0.09 4.76 7.83 -2.91 -0.02 4.73 16 23 C -0.07 -4.29 5.48 84.86 0.47 -3.83 16 24 N -0.95 -62.55 10.16 21.65 0.22 -62.33 16 25 Si 0.98 48.06 29.55 68.60 2.03 50.09 16 26 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 28 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 29 C 0.17 9.10 5.28 86.66 0.46 9.56 16 30 C 0.12 4.78 3.74 45.64 0.17 4.95 16 31 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.09 1.42 5.84 -2.39 -0.01 1.41 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.31 8.02 -2.38 -0.02 1.29 16 35 H 0.05 1.43 8.03 -2.39 -0.02 1.41 16 36 H 0.09 1.74 7.96 -2.39 -0.02 1.72 16 37 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.06 1.59 7.46 -2.38 -0.02 1.58 16 43 H 0.11 1.79 5.49 -2.39 -0.01 1.77 16 44 H 0.11 1.61 7.97 -2.39 -0.02 1.59 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.04 1.45 6.76 -2.39 -0.02 1.43 16 47 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.24 15.63 8.31 -92.71 -0.77 14.86 16 49 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 50 H 0.05 3.47 5.59 -2.39 -0.01 3.46 16 Total: -1.00 -89.93 396.75 3.36 -86.58 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.92 Total: 20.33 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.94 Total: 10.13 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -4.55 Total: -121.43 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.99 Total: -45.70 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -89.93 3.36 -86.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189253047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.462 kcal (2) G-P(sol) polarization free energy of solvation -89.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds