Wall clock time and date at job start Wed Apr 1 2020 03:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46662 * 2 1 4 4 O 1.42895 * 109.47144 * 240.00240 * 2 1 3 5 5 C 1.42902 * 114.00100 * 89.99857 * 4 2 1 6 6 C 1.50699 * 109.47261 * 179.97438 * 5 4 2 7 7 C 1.38240 * 120.00100 * 269.72646 * 6 5 4 8 8 C 1.38234 * 119.99672 * 179.78352 * 7 6 5 9 9 C 1.38230 * 120.00285 * 0.46836 * 8 7 6 10 10 C 1.38239 * 119.99838 * 359.76338 * 9 8 7 11 11 C 1.38227 * 119.99973 * 0.02562 * 10 9 8 12 12 C 1.50694 * 109.47268 * 119.99822 * 2 1 3 13 13 O 1.21286 * 119.99849 * 120.00170 * 12 2 1 14 14 N 1.34780 * 120.00329 * 300.00458 * 12 2 1 15 15 C 1.47286 * 136.54043 * 359.97438 * 14 12 2 16 16 C 1.52791 * 87.32004 * 150.71711 * 15 14 12 17 17 H 1.09002 * 114.70359 * 142.40922 * 16 15 14 18 18 C 1.53059 * 111.39113 * 274.42484 * 16 15 14 19 19 C 1.53958 * 108.39776 * 144.15024 * 18 16 15 20 20 N 1.46538 * 107.57900 * 299.98395 * 19 18 16 21 21 C 1.36931 * 119.73803 * 237.76959 * 20 19 18 22 22 H 1.07998 * 120.00466 * 150.67839 * 21 20 19 23 23 C 1.38823 * 119.99930 * 330.67809 * 21 20 19 24 24 N 1.31610 * 120.00001 * 335.01827 * 23 21 20 25 25 Si 1.86797 * 119.99707 * 155.01899 * 23 21 20 26 26 H 1.48494 * 109.47266 * 90.00200 * 25 23 21 27 27 H 1.48502 * 109.47228 * 329.99561 * 25 23 21 28 28 H 1.48501 * 109.46867 * 209.99960 * 25 23 21 29 29 C 1.45703 * 120.52157 * 57.49563 * 20 19 18 30 30 C 1.46464 * 136.54470 * 179.97438 * 14 12 2 31 31 H 1.08999 * 111.43634 * 97.09859 * 30 14 12 32 32 H 1.08995 * 109.47194 * 60.00150 * 1 2 3 33 33 H 1.09005 * 109.46662 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47098 * 300.00036 * 1 2 3 35 35 H 1.09007 * 109.47065 * 299.99763 * 5 4 2 36 36 H 1.08994 * 109.47101 * 59.99665 * 5 4 2 37 37 H 1.07995 * 119.99626 * 359.97438 * 7 6 5 38 38 H 1.07997 * 119.99750 * 180.25284 * 8 7 6 39 39 H 1.07997 * 119.99975 * 179.78659 * 9 8 7 40 40 H 1.08007 * 119.99412 * 180.02562 * 10 9 8 41 41 H 1.08003 * 119.99453 * 179.97438 * 11 10 9 42 42 H 1.09001 * 113.53023 * 266.07390 * 15 14 12 43 43 H 1.08999 * 113.53363 * 36.63491 * 15 14 12 44 44 H 1.09002 * 109.51423 * 262.82798 * 18 16 15 45 45 H 1.09004 * 109.51228 * 22.97870 * 18 16 15 46 46 H 1.09005 * 108.92764 * 181.12727 * 19 18 16 47 47 H 1.08995 * 111.13971 * 60.10722 * 19 18 16 48 48 H 0.97009 * 119.99951 * 354.27488 * 24 23 21 49 49 H 1.08999 * 108.78701 * 81.16474 * 29 20 19 50 50 H 1.09006 * 108.78369 * 199.36948 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7015 -0.6280 -3.4610 7 6 4.0601 -0.7954 -3.6536 8 6 4.5198 -1.5431 -4.7215 9 6 3.6213 -2.1154 -5.6024 10 6 2.2628 -1.9441 -5.4125 11 6 1.8029 -1.2000 -4.3421 12 6 2.0324 -0.7103 1.2304 13 8 2.7297 -1.6964 1.1191 14 7 1.7068 -0.2499 2.4546 15 6 0.9176 0.8668 3.0017 16 6 0.6314 -0.0222 4.2110 17 1 0.6118 0.5014 5.1669 18 6 -0.5743 -0.9317 3.9624 19 6 -0.3109 -2.2856 4.6464 20 7 0.9030 -2.8527 4.0528 21 6 0.8558 -4.0841 3.4560 22 1 1.5279 -4.3165 2.6432 23 6 -0.0561 -5.0340 3.8956 24 7 -0.5150 -4.9848 5.1281 25 14 -0.6318 -6.3821 2.7377 26 1 0.2707 -7.5553 2.8563 27 1 -0.6081 -5.8784 1.3409 28 1 -2.0159 -6.7841 3.0954 29 6 2.1583 -2.1139 4.0875 30 6 1.9779 -0.6340 3.8417 31 1 2.8053 -0.0605 4.2594 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.2537 0.6547 -2.5588 36 1 2.9319 0.9514 -2.0450 37 1 4.7622 -0.3445 -2.9680 38 1 5.5812 -1.6772 -4.8697 39 1 3.9806 -2.6967 -6.4386 40 1 1.5607 -2.3916 -6.1005 41 1 0.7415 -1.0659 -4.1941 42 1 1.5133 1.7513 3.2271 43 1 0.0256 1.0960 2.4188 44 1 -1.4657 -0.4826 4.4003 45 1 -0.7193 -1.0589 2.8895 46 1 -1.1562 -2.9475 4.4577 47 1 -0.1721 -2.1629 5.7205 48 1 -0.1552 -4.3370 5.7541 49 1 2.6211 -2.2538 5.0644 50 1 2.8245 -2.5178 3.3250 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221684373.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:22 Heat of formation + Delta-G solvation = 20.236275 kcal Electronic energy + Delta-G solvation = -31025.071068 eV Core-core repulsion = 27019.839188 eV Total energy + Delta-G solvation = -4005.231880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.87752 -39.56871 -38.51972 -36.91402 -35.52912 -32.75619 -31.77911 -31.05119 -30.97938 -30.87439 -28.45437 -26.84798 -26.32529 -24.17495 -23.65361 -22.82089 -22.72615 -21.49432 -21.05683 -19.89281 -17.88463 -17.57440 -17.06340 -16.82428 -16.45567 -15.83522 -15.69769 -15.39859 -15.18160 -14.69852 -14.17169 -14.08957 -13.70154 -13.57020 -13.46555 -13.37339 -13.25240 -13.11027 -12.91726 -12.61426 -12.45844 -12.31436 -12.14355 -11.78361 -11.75967 -11.41341 -11.18320 -11.11567 -10.88491 -10.71901 -10.61649 -10.52978 -10.04796 -9.92026 -9.90175 -9.76769 -9.24193 -9.05816 -9.03368 -8.88634 -8.36478 -8.19887 -6.74106 -5.95349 -3.10416 1.10045 1.26595 2.81021 3.02609 3.51851 3.59583 3.62865 3.80122 4.01644 4.49004 4.56556 4.62777 4.69368 4.71602 4.83385 4.86147 4.95107 4.98466 5.06203 5.12287 5.14873 5.23548 5.29007 5.36642 5.38938 5.48300 5.49832 5.58046 5.63680 5.69034 5.80335 5.80504 5.88423 5.91150 5.95201 6.10425 6.17374 6.28676 6.34773 6.38439 6.43914 6.44473 6.54687 6.74707 6.82777 6.92721 7.04795 7.10192 7.24950 8.11346 8.25264 8.60217 8.72358 9.27054 9.99053 10.37593 11.33238 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010669 B = 0.003316 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.870077 B = 8440.800189 C =10078.637289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 H 0.079 0.921 4 O -0.347 6.347 5 C 0.101 3.899 6 C -0.088 4.088 7 C -0.096 4.096 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.125 4.125 11 C -0.097 4.097 12 C 0.544 3.456 13 O -0.505 6.505 14 N -0.632 5.632 15 C 0.089 3.911 16 C -0.110 4.110 17 H 0.092 0.908 18 C -0.116 4.116 19 C 0.150 3.850 20 N -0.588 5.588 21 C -0.337 4.337 22 H 0.055 0.945 23 C -0.025 4.025 24 N -0.921 5.921 25 Si 1.061 2.939 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.287 1.287 29 C 0.144 3.856 30 C 0.129 3.871 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.022 0.978 48 H 0.267 0.733 49 H 0.016 0.984 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 17.830 -14.370 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.019 3.981 3 H 0.096 0.904 4 O -0.265 6.265 5 C 0.024 3.976 6 C -0.088 4.088 7 C -0.114 4.114 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.115 4.115 12 C 0.332 3.668 13 O -0.378 6.378 14 N -0.370 5.370 15 C -0.034 4.034 16 C -0.129 4.129 17 H 0.110 0.890 18 C -0.156 4.156 19 C 0.023 3.977 20 N -0.312 5.312 21 C -0.466 4.466 22 H 0.073 0.927 23 C -0.226 4.226 24 N -0.562 5.562 25 Si 0.891 3.109 26 H -0.222 1.222 27 H -0.219 1.219 28 H -0.213 1.213 29 C 0.017 3.983 30 C 0.025 3.975 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.040 0.960 48 H 0.078 0.922 49 H 0.033 0.967 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.798 15.676 -14.865 21.784 hybrid contribution 1.150 1.714 0.114 2.067 sum 3.948 17.389 -14.752 23.143 Atomic orbital electron populations 1.22317 0.93707 1.04413 1.02588 1.21796 0.95140 0.95571 0.85613 0.90359 1.88184 1.86486 1.33481 1.18338 1.21399 0.99446 0.91731 0.85010 1.19554 0.93710 1.00019 0.95478 1.21084 0.94919 0.98152 0.97231 1.21144 0.99796 0.98065 0.95222 1.21195 0.93468 0.99351 0.99342 1.21147 0.95782 0.99171 0.98160 1.21074 0.99530 0.96532 0.94357 1.19622 0.80425 0.84792 0.81998 1.90747 1.36978 1.24999 1.85117 1.49412 1.53143 1.30041 1.04429 1.23270 0.95011 0.90915 0.94212 1.22598 0.96448 0.96579 0.97272 0.88984 1.22056 0.94157 0.97737 1.01609 1.21015 0.91409 0.91592 0.93636 1.43538 1.02688 1.17117 1.67823 1.20043 1.23493 0.90141 1.12965 0.92722 1.25741 0.99304 0.99318 0.98254 1.70764 1.46452 1.36412 1.02561 0.83596 0.76544 0.75613 0.75108 1.22204 1.21940 1.21288 1.20239 0.90481 0.88585 0.98950 1.22389 0.96613 0.99279 0.79179 0.90529 0.91766 0.90603 0.90689 0.92345 0.92517 0.85945 0.85915 0.86047 0.85892 0.85890 0.90224 0.90535 0.92730 0.91777 0.90003 0.95982 0.92223 0.96679 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.41 37.16 0.35 -1.85 16 2 C 0.08 1.16 3.03 -27.88 -0.08 1.08 16 3 H 0.08 0.88 7.79 -51.93 -0.40 0.47 16 4 O -0.35 -5.63 9.50 -55.14 -0.52 -6.15 16 5 C 0.10 1.18 5.87 36.01 0.21 1.39 16 6 C -0.09 -1.07 5.51 -104.62 -0.58 -1.65 16 7 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 8 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 9 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 10 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 11 C -0.10 -1.10 9.70 -39.59 -0.38 -1.49 16 12 C 0.54 10.35 7.42 -10.99 -0.08 10.27 16 13 O -0.51 -12.32 15.75 -14.36 -0.23 -12.54 16 14 N -0.63 -10.53 3.21 -191.23 -0.61 -11.15 16 15 C 0.09 1.06 7.37 -12.21 -0.09 0.97 16 16 C -0.11 -1.60 4.47 -91.00 -0.41 -2.00 16 17 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 18 C -0.12 -2.05 5.72 -26.20 -0.15 -2.20 16 19 C 0.15 3.45 4.69 -3.52 -0.02 3.43 16 20 N -0.59 -15.22 2.83 -174.39 -0.49 -15.72 16 21 C -0.34 -10.03 9.39 -15.06 -0.14 -10.17 16 22 H 0.05 1.75 7.90 -52.49 -0.41 1.33 16 23 C -0.03 -0.75 4.63 -17.43 -0.08 -0.83 16 24 N -0.92 -28.13 12.38 55.49 0.69 -27.44 16 25 Si 1.06 26.97 29.99 -169.99 -5.10 21.87 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 C 0.14 3.28 6.15 -5.43 -0.03 3.25 16 30 C 0.13 2.24 4.09 -77.69 -0.32 1.92 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.85 5.24 -51.93 -0.27 0.58 16 35 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 36 H 0.06 0.56 8.03 -51.93 -0.42 0.15 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.80 5.61 -51.93 -0.29 0.51 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.23 7.64 -51.93 -0.40 0.83 16 46 H 0.08 2.15 6.18 -51.93 -0.32 1.83 16 47 H 0.02 0.51 7.95 -51.93 -0.41 0.09 16 48 H 0.27 8.15 6.82 -40.82 -0.28 7.88 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 1.83 6.47 -51.93 -0.34 1.49 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -36.97 396.74 -11.47 -48.45 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.81 Total: 1.01 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -3.38 Total: -4.31 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.42 Total: -54.31 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.75 Total: -18.69 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -5.10 Total: 21.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.97 -11.47 -48.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221684373.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.683 kcal (2) G-P(sol) polarization free energy of solvation -36.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds