Wall clock time and date at job start Wed Apr 1 2020 03:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47051 * 2 1 4 4 C 1.39739 * 123.89489 * 89.99729 * 3 2 1 5 5 C 1.39355 * 130.76362 * 0.04303 * 4 3 2 6 6 C 1.37903 * 120.20297 * 179.97438 * 5 4 3 7 7 C 1.38742 * 120.31899 * 0.04321 * 6 5 4 8 8 O 1.35969 * 120.14968 * 179.97438 * 7 6 5 9 9 C 1.42897 * 116.99729 * 354.39256 * 8 7 6 10 10 H 1.09002 * 110.78159 * 327.06227 * 9 8 7 11 11 C 1.55162 * 110.71871 * 203.83061 * 9 8 7 12 12 C 1.54916 * 101.57925 * 206.13125 * 11 9 8 13 13 N 1.47420 * 104.83502 * 37.01035 * 12 11 9 14 14 C 1.36928 * 125.65340 * 155.82185 * 13 12 11 15 15 H 1.07996 * 120.00435 * 180.02562 * 14 13 12 16 16 C 1.38815 * 119.99646 * 0.02648 * 14 13 12 17 17 N 1.31619 * 119.99992 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00120 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46705 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46866 * 119.99978 * 18 16 14 21 21 H 1.48492 * 109.47237 * 240.00000 * 18 16 14 22 22 C 1.47029 * 108.70139 * 335.86915 * 13 12 11 23 23 C 1.38833 * 119.70839 * 0.23119 * 7 6 5 24 24 C 1.37668 * 119.87188 * 359.47116 * 23 7 6 25 25 C 1.51144 * 132.78593 * 180.21629 * 24 23 7 26 26 C 1.52998 * 110.50307 * 61.65106 * 25 24 23 27 27 C 1.52992 * 110.61838 * 299.01510 * 25 24 23 28 28 C 1.34366 * 123.88970 * 270.01901 * 3 2 1 29 29 O 1.21290 * 126.43642 * 359.94353 * 28 3 2 30 30 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47571 * 300.00414 * 1 2 3 32 32 H 1.09007 * 109.46798 * 60.00650 * 1 2 3 33 33 H 1.08998 * 109.47571 * 239.99586 * 2 1 3 34 34 H 1.08999 * 109.47279 * 119.99773 * 2 1 3 35 35 H 1.07996 * 119.89869 * 359.97438 * 5 4 3 36 36 H 1.08005 * 119.84547 * 180.02562 * 6 5 4 37 37 H 1.09000 * 111.00135 * 324.20359 * 11 9 8 38 38 H 1.08996 * 111.00598 * 88.05843 * 11 9 8 39 39 H 1.08999 * 110.36036 * 155.84698 * 12 11 9 40 40 H 1.09002 * 110.36397 * 278.05880 * 12 11 9 41 41 H 0.97004 * 120.00040 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.88382 * 241.64220 * 22 13 12 43 43 H 1.08999 * 109.88062 * 120.47879 * 22 13 12 44 44 H 1.07996 * 120.06088 * 179.75148 * 23 7 6 45 45 H 1.09001 * 109.47102 * 176.13313 * 26 25 24 46 46 H 1.09004 * 109.47071 * 296.13704 * 26 25 24 47 47 H 1.09002 * 109.47165 * 56.13262 * 26 25 24 48 48 H 1.09001 * 109.47720 * 303.79827 * 27 25 24 49 49 H 1.09005 * 109.47277 * 63.80169 * 27 25 24 50 50 H 1.08997 * 109.47340 * 183.79621 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2780 2.1160 1.1599 5 6 2.1558 1.7681 2.5038 6 6 2.4780 2.6786 3.4882 7 6 2.9252 3.9475 3.1493 8 8 3.2414 4.8427 4.1226 9 6 2.9738 4.4555 5.4719 10 1 2.0893 3.8206 5.5238 11 6 2.8074 5.7036 6.3785 12 6 3.2125 5.1386 7.7629 13 7 4.3127 4.1991 7.4799 14 6 5.2838 3.8169 8.3665 15 1 6.0503 3.1203 8.0607 16 6 5.2829 4.3250 9.6583 17 7 4.3485 5.1736 10.0311 18 14 6.6072 3.8031 10.8681 19 1 7.5325 2.8478 10.2074 20 1 7.3669 4.9978 11.3161 21 1 5.9753 3.1494 12.0421 22 6 4.1954 3.7413 6.0877 23 6 3.0433 4.3010 1.8119 24 6 2.7269 3.3884 0.8309 25 6 2.7502 3.4546 -0.6789 26 6 4.1727 3.7070 -1.1824 27 6 1.8028 4.5440 -1.1850 28 6 2.2676 2.0877 -1.1154 29 8 2.1321 1.7025 -2.2575 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.8077 0.7825 2.7753 36 1 2.3815 2.4027 4.5279 37 1 3.4814 6.5029 6.0703 38 1 1.7731 6.0473 6.3842 39 1 3.5574 5.9417 8.4141 40 1 2.3724 4.6152 8.2195 41 1 4.3481 5.5289 10.9337 42 1 4.0449 2.6621 6.0637 43 1 5.0966 4.0043 5.5338 44 1 3.3870 5.2886 1.5418 45 1 4.1820 3.6832 -2.2721 46 1 4.5124 4.6835 -0.8372 47 1 4.8373 2.9339 -0.7964 48 1 0.7993 4.3602 -0.8011 49 1 2.1511 5.5176 -0.8400 50 1 1.7829 4.5307 -2.2748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234898731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:03 Heat of formation + Delta-G solvation = -22.491573 kcal Electronic energy + Delta-G solvation = -30398.678490 eV Core-core repulsion = 26391.593791 eV Total energy + Delta-G solvation = -4007.084698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.92227 -40.98319 -39.17589 -38.02147 -36.83536 -35.99669 -34.25733 -32.49613 -31.56794 -31.06903 -29.30791 -28.92502 -28.35919 -26.55767 -26.30436 -24.02246 -23.44756 -22.58754 -22.08854 -21.26573 -20.62360 -19.10797 -18.98916 -18.03437 -17.73945 -17.06489 -16.83714 -16.51176 -16.42592 -15.76597 -15.60762 -15.41373 -15.30208 -15.00965 -14.63755 -14.38887 -14.33260 -14.11451 -14.10022 -13.97954 -13.66888 -13.43315 -13.37770 -13.20174 -13.05751 -12.97754 -12.88750 -12.78634 -12.59246 -12.33059 -12.21882 -12.18756 -11.99374 -11.87187 -11.80819 -11.57295 -11.32786 -10.94970 -10.80226 -10.76377 -9.97334 -8.93001 -8.58282 -7.79453 -5.24352 0.13965 0.26137 1.35832 1.48286 1.48847 1.59153 1.67090 2.10288 2.49888 2.69268 3.03087 3.24204 3.32061 3.61771 3.70732 3.72824 3.81879 3.95140 3.98528 3.99322 4.01828 4.12257 4.15649 4.21859 4.28491 4.37018 4.60982 4.65926 4.67809 4.69288 4.71225 4.77814 4.78124 4.81813 4.88310 4.91122 4.97683 5.01277 5.04914 5.08626 5.15905 5.19391 5.20275 5.35307 5.45519 5.45754 5.59470 5.63737 5.77364 5.97269 6.28420 6.49625 6.81373 7.08782 7.74300 8.36577 9.22784 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.002286 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.086972 B =12245.679998 C =12676.204660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.545 5.545 4 C 0.091 3.909 5 C -0.086 4.086 6 C -0.177 4.177 7 C 0.104 3.896 8 O -0.309 6.309 9 C 0.088 3.912 10 H 0.099 0.901 11 C -0.123 4.123 12 C 0.154 3.846 13 N -0.624 5.624 14 C -0.240 4.240 15 H 0.080 0.920 16 C -0.064 4.064 17 N -0.947 5.947 18 Si 0.980 3.020 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.117 3.883 23 C -0.097 4.097 24 C -0.094 4.094 25 C -0.051 4.051 26 C -0.125 4.125 27 C -0.123 4.123 28 C 0.527 3.473 29 O -0.536 6.536 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.001 0.999 41 H 0.249 0.751 42 H 0.034 0.966 43 H 0.026 0.974 44 H 0.149 0.851 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.092 0.908 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -5.337 -21.649 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.268 5.268 4 C -0.004 4.004 5 C -0.107 4.107 6 C -0.196 4.196 7 C 0.058 3.942 8 O -0.222 6.222 9 C 0.032 3.968 10 H 0.117 0.883 11 C -0.162 4.162 12 C 0.029 3.971 13 N -0.351 5.351 14 C -0.368 4.368 15 H 0.098 0.902 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.808 3.192 19 H -0.193 1.193 20 H -0.218 1.218 21 H -0.217 1.217 22 C -0.009 4.009 23 C -0.116 4.116 24 C -0.097 4.097 25 C -0.055 4.055 26 C -0.182 4.182 27 C -0.180 4.180 28 C 0.317 3.683 29 O -0.413 6.413 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.019 0.981 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.044 0.956 44 H 0.166 0.834 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.111 0.889 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.805 -5.474 -22.169 24.132 hybrid contribution 0.546 -0.624 1.152 1.419 sum -7.259 -6.098 -21.017 23.057 Atomic orbital electron populations 1.22097 0.94157 1.03890 1.01928 1.21846 0.95851 0.79883 1.04791 1.45955 1.61385 1.14491 1.04953 1.18172 1.02614 0.91861 0.87712 1.20259 1.01522 1.00750 0.88170 1.21196 1.04535 0.93142 1.00720 1.19031 0.97006 0.89273 0.88900 1.86138 1.79729 1.41511 1.14806 1.23366 0.97173 0.97892 0.78412 0.88346 1.23011 1.02564 0.96228 0.94352 1.21771 0.88425 0.93635 0.93271 1.44664 1.30324 1.51881 1.08228 1.19452 1.04112 1.21405 0.91871 0.90249 1.25615 1.01026 1.00001 0.98992 1.70004 1.35900 1.35541 1.18247 0.84985 0.78313 0.77291 0.78573 1.19265 1.21772 1.21738 1.21825 0.96520 0.96644 0.85912 1.19424 1.03693 1.00723 0.87780 1.19508 1.02551 0.93378 0.94215 1.20189 1.00145 0.94105 0.91024 1.21679 0.90951 1.03659 1.01896 1.21667 0.97467 0.97062 1.01847 1.20847 0.75927 0.87717 0.83837 1.90713 1.54344 1.76208 1.20013 0.88839 0.92030 0.93783 0.89654 0.87685 0.83295 0.84195 0.91224 0.88428 0.90233 0.98097 0.94112 0.94763 0.95625 0.83363 0.90801 0.89005 0.92800 0.92615 0.88940 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.24 71.98 0.74 -1.45 16 2 C 0.10 1.48 6.46 86.38 0.56 2.04 16 3 N -0.55 -11.11 2.74 -630.69 -1.73 -12.84 16 4 C 0.09 1.89 6.70 38.31 0.26 2.15 16 5 C -0.09 -1.70 9.73 22.46 0.22 -1.48 16 6 C -0.18 -4.09 8.89 22.31 0.20 -3.89 16 7 C 0.10 2.66 6.68 22.53 0.15 2.81 16 8 O -0.31 -9.38 9.87 -93.20 -0.92 -10.30 16 9 C 0.09 2.89 2.74 31.78 0.09 2.98 16 10 H 0.10 2.84 6.27 -2.39 -0.01 2.82 16 11 C -0.12 -4.40 6.81 31.99 0.22 -4.19 16 12 C 0.15 7.27 5.89 86.86 0.51 7.79 16 13 N -0.62 -31.51 3.39 -691.98 -2.35 -33.86 16 14 C -0.24 -13.24 10.27 84.04 0.86 -12.38 16 15 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 16 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 17 N -0.95 -55.01 10.09 21.65 0.22 -54.80 16 18 Si 0.98 44.81 29.55 68.60 2.03 46.84 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 C 0.12 4.72 6.80 86.73 0.59 5.31 16 23 C -0.10 -2.13 9.98 22.28 0.22 -1.90 16 24 C -0.09 -1.94 5.00 -19.70 -0.10 -2.04 16 25 C -0.05 -0.97 1.01 -53.32 -0.05 -1.03 16 26 C -0.12 -2.02 8.63 71.98 0.62 -1.40 16 27 C -0.12 -1.91 8.64 71.98 0.62 -1.29 16 28 C 0.53 12.23 6.88 87.94 0.61 12.84 16 29 O -0.54 -15.25 17.67 -3.06 -0.05 -15.30 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.09 1.36 7.95 -2.39 -0.02 1.35 16 34 H 0.10 1.19 7.61 -2.39 -0.02 1.17 16 35 H 0.15 2.17 7.69 -2.91 -0.02 2.15 16 36 H 0.14 3.24 5.62 -2.91 -0.02 3.23 16 37 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.08 4.32 5.87 -2.39 -0.01 4.31 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 43 H 0.03 1.09 8.06 -2.39 -0.02 1.07 16 44 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -67.64 400.26 4.90 -62.74 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.93 Total: 15.71 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.77 Total: 1.80 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -3.86 Total: -101.49 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.97 Total: -25.59 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.64 4.90 -62.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234898731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.251 kcal (2) G-P(sol) polarization free energy of solvation -67.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds