Wall clock time and date at job start Wed Apr 1 2020 03:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46656 * 2 1 4 4 C 1.53001 * 109.47147 * 240.00224 * 2 1 3 5 5 N 1.46499 * 109.47297 * 64.99840 * 4 2 1 6 6 C 1.34775 * 119.99685 * 180.02562 * 5 4 2 7 7 O 1.21347 * 120.00448 * 359.97438 * 6 5 4 8 8 C 1.49454 * 119.99667 * 180.02562 * 6 5 4 9 9 O 1.21348 * 119.99829 * 6.39364 * 8 6 5 10 10 N 1.34770 * 119.99643 * 186.39819 * 8 6 5 11 11 C 1.46923 * 120.63568 * 7.07972 * 10 8 6 12 12 C 1.53195 * 108.77987 * 233.58732 * 11 10 8 13 13 C 1.53032 * 109.31229 * 305.36679 * 12 11 10 14 14 C 1.53039 * 109.54234 * 61.36023 * 13 12 11 15 15 H 1.09001 * 109.49051 * 58.61736 * 14 13 12 16 16 C 1.50703 * 109.49935 * 178.68208 * 14 13 12 17 17 H 1.07996 * 119.99887 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99629 * 180.02562 * 16 14 13 19 19 N 1.31515 * 120.00295 * 359.97438 * 18 16 14 20 20 Si 1.86807 * 119.99633 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.46949 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46714 * 119.99825 * 20 18 16 23 23 H 1.48502 * 109.46886 * 239.99867 * 20 18 16 24 24 C 1.46928 * 120.63058 * 186.80722 * 10 8 6 25 25 C 1.50698 * 109.47133 * 119.99620 * 2 1 3 26 26 C 1.38235 * 119.99620 * 59.72814 * 25 2 1 27 27 C 1.38241 * 119.99832 * 179.76258 * 26 25 2 28 28 C 1.38236 * 119.99627 * 0.51185 * 27 26 25 29 29 C 1.38231 * 120.00474 * 359.74573 * 28 27 26 30 30 C 1.38236 * 119.99980 * 240.00260 * 25 2 1 31 31 H 1.09005 * 109.47149 * 60.00489 * 1 2 3 32 32 H 1.09005 * 109.46656 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46835 * 300.00056 * 1 2 3 34 34 H 1.09005 * 109.46616 * 184.99987 * 4 2 1 35 35 H 1.08999 * 109.46600 * 304.99481 * 4 2 1 36 36 H 0.97000 * 119.99957 * 0.02562 * 5 4 2 37 37 H 1.09004 * 109.58542 * 353.37946 * 11 10 8 38 38 H 1.09002 * 109.58676 * 113.65857 * 11 10 8 39 39 H 1.08998 * 109.49552 * 65.31703 * 12 11 10 40 40 H 1.09001 * 109.49449 * 185.41058 * 12 11 10 41 41 H 1.08995 * 109.46037 * 181.38779 * 13 12 11 42 42 H 1.09011 * 109.46164 * 301.35503 * 13 12 11 43 43 H 0.96997 * 119.99550 * 179.97438 * 19 18 16 44 44 H 1.09009 * 109.58699 * 246.20426 * 24 10 8 45 45 H 1.09003 * 109.58681 * 6.62224 * 24 10 8 46 46 H 1.07999 * 120.00055 * 0.02562 * 26 25 2 47 47 H 1.07997 * 120.00006 * 180.23158 * 27 26 25 48 48 H 1.08004 * 119.99910 * 179.72256 * 28 27 26 49 49 H 1.07998 * 120.00427 * 179.97438 * 29 28 27 50 50 H 1.07994 * 120.00164 * 0.02562 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 1.9956 -0.4136 -3.6659 7 8 2.6260 -1.4443 -3.7793 8 6 1.6008 0.3585 -4.8831 9 8 1.0741 1.4457 -4.7675 10 7 1.8295 -0.1526 -6.1089 11 6 2.3221 -1.5278 -6.2667 12 6 3.5859 -1.5028 -7.1320 13 6 3.2821 -0.7888 -8.4511 14 6 2.8626 0.6552 -8.1668 15 1 3.6613 1.1670 -7.6299 16 6 2.5949 1.3667 -9.4680 17 1 2.7117 0.8417 -10.4045 18 6 2.2008 2.6880 -9.4628 19 7 2.0581 3.3272 -8.3223 20 14 1.8683 3.5698 -11.0757 21 1 2.0989 2.6359 -12.2070 22 1 0.4601 4.0408 -11.1011 23 1 2.7820 4.7337 -11.2010 24 6 1.5853 0.6527 -7.3134 25 6 2.0324 -0.7103 1.2305 26 6 1.6937 -2.0321 1.4521 27 6 2.1586 -2.6852 2.5784 28 6 2.9533 -2.0133 3.4883 29 6 3.2875 -0.6900 3.2694 30 6 2.8271 -0.0384 2.1404 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 3.1264 -0.7994 -1.2055 35 1 1.6055 -1.7198 -1.2951 36 1 1.1489 0.8595 -2.3518 37 1 2.5575 -1.9461 -5.2880 38 1 1.5578 -2.1365 -6.7500 39 1 4.3776 -0.9708 -6.6044 40 1 3.9070 -2.5241 -7.3366 41 1 4.1730 -0.7913 -9.0789 42 1 2.4732 -1.3069 -8.9665 43 1 1.7812 4.2568 -8.3188 44 1 0.7631 0.2188 -7.8825 45 1 1.3344 1.6737 -7.0256 46 1 1.0696 -2.5558 0.7432 47 1 1.8971 -3.7189 2.7496 48 1 3.3127 -2.5222 4.3705 49 1 3.9080 -0.1650 3.9805 50 1 3.0876 0.9956 1.9697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261680307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:21 Heat of formation + Delta-G solvation = -60.402029 kcal Electronic energy + Delta-G solvation = -29839.891174 eV Core-core repulsion = 25831.162555 eV Total energy + Delta-G solvation = -4008.728619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.97987 -40.51195 -39.71503 -38.53105 -37.27334 -35.28011 -34.29099 -33.42957 -31.76163 -31.55887 -30.32806 -28.44224 -27.20960 -26.62071 -24.62105 -23.72455 -23.51507 -23.08126 -21.74259 -21.15100 -20.35053 -18.91471 -18.27399 -17.93943 -17.63834 -17.12949 -16.78381 -16.51054 -16.35411 -15.94863 -15.83072 -15.55915 -15.40789 -14.83902 -14.81405 -14.60895 -14.45248 -14.42392 -14.15872 -13.96316 -13.81258 -13.48486 -13.43841 -13.02753 -12.94716 -12.90781 -12.46449 -12.38910 -12.30844 -12.20584 -12.16687 -11.76933 -11.70901 -11.63567 -11.59316 -11.15678 -10.98557 -10.56347 -10.36307 -10.00703 -9.77602 -9.60318 -9.54529 -8.12883 -6.29042 0.34926 0.45146 0.54306 1.34966 1.41752 1.42536 1.54226 2.15218 2.40965 2.57506 2.90771 3.15537 3.30777 3.66800 3.75918 3.97331 4.15642 4.16730 4.19202 4.20574 4.33110 4.34850 4.37917 4.57797 4.61379 4.63441 4.67672 4.71523 4.76693 4.81609 4.83212 4.90929 5.05203 5.08787 5.14327 5.17361 5.21259 5.23646 5.27420 5.30623 5.39961 5.52800 5.56761 5.62407 5.67592 5.73525 5.83361 5.93094 5.98894 6.15532 6.29383 6.44715 6.73947 6.83275 6.98295 7.40766 8.91607 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021864 B = 0.002089 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.327001 B =13398.094576 C =14097.186275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 H 0.093 0.907 4 C 0.127 3.873 5 N -0.684 5.684 6 C 0.521 3.479 7 O -0.520 6.520 8 C 0.486 3.514 9 O -0.558 6.558 10 N -0.575 5.575 11 C 0.049 3.951 12 C -0.120 4.120 13 C -0.107 4.107 14 C 0.038 3.962 15 H -0.011 1.011 16 C -0.534 4.534 17 H 0.063 0.937 18 C 0.010 3.990 19 N -0.915 5.915 20 Si 0.960 3.040 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.122 3.878 25 C -0.084 4.084 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.131 4.131 29 C -0.128 4.128 30 C -0.126 4.126 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.418 0.582 37 H 0.156 0.844 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.261 0.739 44 H 0.045 0.955 45 H 0.084 0.916 46 H 0.130 0.870 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.011 -12.135 23.496 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.005 3.995 5 N -0.336 5.336 6 C 0.302 3.698 7 O -0.399 6.399 8 C 0.268 3.732 9 O -0.438 6.438 10 N -0.306 5.306 11 C -0.071 4.071 12 C -0.158 4.158 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.007 0.993 16 C -0.572 4.572 17 H 0.081 0.919 18 C -0.189 4.189 19 N -0.554 5.554 20 Si 0.785 3.215 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.000 4.000 25 C -0.084 4.084 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.148 4.148 29 C -0.146 4.146 30 C -0.144 4.144 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.256 0.744 37 H 0.172 0.828 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.148 0.852 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.155 0.845 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.895 -12.137 23.551 26.510 hybrid contribution -0.355 1.423 -1.040 1.798 sum -1.250 -10.715 22.511 24.962 Atomic orbital electron populations 1.21896 0.92896 1.02976 1.02550 1.20303 0.97196 0.99730 0.90221 0.88877 1.21675 1.00515 0.95528 0.81802 1.45804 1.55283 1.28098 1.04450 1.19939 0.80147 0.84812 0.84894 1.90278 1.40528 1.24507 1.84564 1.20471 0.80776 0.86427 0.85515 1.90726 1.43767 1.22644 1.86654 1.48468 1.61033 1.15833 1.05266 1.23318 0.96232 0.80793 1.06772 1.21820 0.96937 1.01476 0.95603 1.21561 1.00405 0.95704 0.96768 1.18992 0.92109 0.92946 0.94028 0.99314 1.21515 1.46305 0.96383 0.93021 0.91914 1.25896 0.95018 0.98458 0.99575 1.70061 1.47508 1.11023 1.26817 0.85472 0.77611 0.78405 0.79975 1.18615 1.20671 1.20830 1.22034 0.98868 0.95832 0.83278 1.19678 0.98392 0.94610 0.95767 1.21231 1.00310 0.94303 0.98222 1.21435 0.97870 1.00816 0.94420 1.21477 0.98337 0.95000 1.00028 1.21427 1.00089 0.95343 0.97745 1.21321 0.97760 1.00639 0.94677 0.92226 0.91674 0.91370 0.91232 0.90034 0.74445 0.82809 0.91046 0.93604 0.88385 0.92834 0.92388 0.92940 0.93692 0.89768 0.85247 0.84469 0.84400 0.84498 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.88 71.98 0.64 -1.32 16 2 C -0.06 -0.81 2.60 -11.54 -0.03 -0.84 16 3 H 0.09 1.29 7.88 -2.38 -0.02 1.27 16 4 C 0.13 2.38 4.81 86.38 0.42 2.80 16 5 N -0.68 -16.64 5.27 -464.41 -2.45 -19.09 16 6 C 0.52 16.77 7.78 87.27 0.68 17.45 16 7 O -0.52 -17.07 13.10 -3.24 -0.04 -17.12 16 8 C 0.49 19.95 7.74 87.27 0.68 20.63 16 9 O -0.56 -26.21 15.94 -3.24 -0.05 -26.26 16 10 N -0.57 -24.45 2.97 -819.63 -2.43 -26.88 16 11 C 0.05 1.70 6.27 86.36 0.54 2.24 16 12 C -0.12 -4.14 6.08 30.67 0.19 -3.95 16 13 C -0.11 -4.37 5.10 30.62 0.16 -4.21 16 14 C 0.04 1.98 2.26 -11.32 -0.03 1.96 16 15 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 16 C -0.53 -29.54 8.56 25.60 0.22 -29.32 16 17 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 18 C 0.01 0.56 5.31 84.65 0.45 1.01 16 19 N -0.92 -54.84 11.41 21.45 0.24 -54.60 16 20 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 C 0.12 6.14 5.41 86.51 0.47 6.60 16 25 C -0.08 -1.26 4.78 -19.87 -0.09 -1.35 16 26 C -0.12 -1.75 8.76 22.27 0.20 -1.56 16 27 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 28 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 29 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 30 C -0.13 -1.82 9.67 22.27 0.22 -1.60 16 31 H 0.06 0.86 7.18 -2.38 -0.02 0.84 16 32 H 0.06 0.82 7.37 -2.38 -0.02 0.80 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.08 1.47 7.58 -2.39 -0.02 1.45 16 36 H 0.42 9.65 7.14 -92.71 -0.66 8.98 16 37 H 0.16 5.08 3.78 -78.78 -0.30 4.78 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.08 4.94 5.20 -2.39 -0.01 4.93 16 46 H 0.13 1.58 7.16 -2.91 -0.02 1.56 16 47 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 49 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 50 H 0.13 1.57 7.95 -2.91 -0.02 1.55 16 Total: -1.00 -69.21 398.45 2.65 -66.56 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -0.01 Total: 27.03 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 5.36 Total: 4.26 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -4.64 Total: -100.57 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.09 Total: -43.38 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -69.21 2.65 -66.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261680307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.158 kcal (2) G-P(sol) polarization free energy of solvation -69.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds