Wall clock time and date at job start Wed Apr 1 2020 03:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47168 * 240.00199 * 2 1 3 5 5 N 1.46502 * 109.47360 * 64.99856 * 4 2 1 6 6 C 1.34782 * 120.00166 * 180.02562 * 5 4 2 7 7 O 1.21350 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.49446 * 120.00084 * 179.97438 * 6 5 4 9 9 O 1.21356 * 119.99803 * 353.37756 * 8 6 5 10 10 N 1.34768 * 120.00057 * 173.37736 * 8 6 5 11 11 C 1.46923 * 120.63140 * 353.06161 * 10 8 6 12 12 C 1.53197 * 108.77603 * 126.41596 * 11 10 8 13 13 C 1.53036 * 109.34037 * 54.62030 * 12 11 10 14 14 C 1.53043 * 109.53781 * 298.68543 * 13 12 11 15 15 H 1.09000 * 109.49772 * 301.34791 * 14 13 12 16 16 C 1.50699 * 109.49861 * 181.28187 * 14 13 12 17 17 H 1.08009 * 119.99826 * 0.06421 * 16 14 13 18 18 C 1.37874 * 120.00391 * 180.34183 * 16 14 13 19 19 N 1.31511 * 119.99935 * 359.72505 * 18 16 14 20 20 Si 1.86803 * 120.00371 * 179.72468 * 18 16 14 21 21 H 1.48501 * 109.46889 * 59.99781 * 20 18 16 22 22 H 1.48493 * 109.47092 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46907 * 300.00065 * 20 18 16 24 24 C 1.46927 * 120.63303 * 173.08900 * 10 8 6 25 25 C 1.50699 * 109.47374 * 120.00081 * 2 1 3 26 26 C 1.38225 * 120.00098 * 59.72474 * 25 2 1 27 27 C 1.38238 * 120.00037 * 179.76838 * 26 25 2 28 28 C 1.38234 * 119.99736 * 0.48260 * 27 26 25 29 29 C 1.38235 * 120.00403 * 359.79781 * 28 27 26 30 30 C 1.38236 * 119.99688 * 359.94891 * 29 28 27 31 31 H 1.09005 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47539 * 299.99970 * 1 2 3 33 33 H 1.08999 * 109.47467 * 60.00076 * 1 2 3 34 34 H 1.09007 * 109.47352 * 304.99631 * 4 2 1 35 35 H 1.09010 * 109.47442 * 184.99717 * 4 2 1 36 36 H 0.96996 * 120.00059 * 359.97438 * 5 4 2 37 37 H 1.08998 * 109.59171 * 246.19792 * 11 10 8 38 38 H 1.09003 * 109.58922 * 6.48999 * 11 10 8 39 39 H 1.08995 * 109.50150 * 174.58993 * 12 11 10 40 40 H 1.09009 * 109.49617 * 294.68452 * 12 11 10 41 41 H 1.08997 * 109.49188 * 178.64856 * 13 12 11 42 42 H 1.09001 * 109.43006 * 58.68768 * 13 12 11 43 43 H 0.97000 * 120.00590 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.59192 * 113.79627 * 24 10 8 45 45 H 1.08998 * 109.70190 * 353.44355 * 24 10 8 46 46 H 1.08000 * 120.00163 * 0.02562 * 26 25 2 47 47 H 1.08000 * 120.00376 * 180.25754 * 27 26 25 48 48 H 1.08000 * 119.99948 * 179.76572 * 28 27 26 49 49 H 1.07991 * 120.00368 * 179.97438 * 29 28 27 50 50 H 1.07997 * 120.00151 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 1.9955 -0.4136 -3.6660 7 8 2.6259 -1.4443 -3.7793 8 6 1.5997 0.3580 -4.8832 9 8 0.8688 1.3212 -4.7799 10 7 2.0543 -0.0160 -6.0955 11 6 3.0569 -1.0825 -6.2227 12 6 2.5299 -2.1410 -7.1967 13 6 2.1547 -1.4701 -8.5200 14 6 1.0470 -0.4424 -8.2768 15 1 0.1800 -0.9384 -7.8405 16 6 0.6563 0.1951 -9.5852 17 1 1.1479 -0.1034 -10.4994 18 6 -0.3246 1.1636 -9.6144 19 7 -0.9231 1.5271 -8.5013 20 14 -0.8035 1.9594 -11.2352 21 1 -1.2995 0.9179 -12.1705 22 1 -1.8738 2.9609 -10.9977 23 1 0.3817 2.6313 -11.8260 24 6 1.5573 0.6353 -7.3151 25 6 2.0323 -0.7104 1.2304 26 6 1.6938 -2.0321 1.4521 27 6 2.1586 -2.6852 2.5783 28 6 2.9537 -2.0135 3.4879 29 6 3.2876 -0.6900 3.2693 30 6 2.8271 -0.0385 2.1404 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.6054 -1.7198 -1.2952 35 1 3.1264 -0.7994 -1.2057 36 1 1.1482 0.8591 -2.3518 37 1 3.9880 -0.6649 -6.6057 38 1 3.2337 -1.5361 -5.2474 39 1 3.3027 -2.8889 -7.3743 40 1 1.6492 -2.6214 -6.7703 41 1 1.8019 -2.2246 -9.2231 42 1 3.0301 -0.9695 -8.9338 43 1 -1.6135 2.2081 -8.5218 44 1 2.3661 1.1931 -7.7872 45 1 0.7434 1.3151 -7.0630 46 1 1.0695 -2.5558 0.7432 47 1 1.8975 -3.7191 2.7494 48 1 3.3137 -2.5226 4.3697 49 1 3.9084 -0.1651 3.9801 50 1 3.0882 0.9954 1.9693 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261680309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:30 Heat of formation + Delta-G solvation = -42.557460 kcal Electronic energy + Delta-G solvation = -29849.735847 eV Core-core repulsion = 25841.781026 eV Total energy + Delta-G solvation = -4007.954820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.58728 -39.80517 -38.31765 -36.88620 -36.31306 -33.62440 -33.04853 -31.70796 -31.23136 -29.73363 -29.69213 -27.35748 -25.54284 -24.96189 -23.71628 -22.92121 -22.09930 -21.77111 -20.62528 -20.05564 -18.76648 -17.43371 -17.12492 -16.55299 -16.20016 -15.85627 -15.70529 -15.27694 -15.12242 -14.73608 -14.57293 -14.39183 -13.95421 -13.78420 -13.69446 -13.53289 -13.38252 -13.11934 -12.91380 -12.68382 -12.57874 -12.36745 -12.08494 -11.78789 -11.70848 -11.56648 -11.39742 -11.15006 -11.03678 -10.96348 -10.71074 -10.46525 -10.26995 -10.04926 -9.87931 -9.27895 -9.22463 -9.20809 -9.10819 -9.04451 -8.51830 -8.40679 -7.81793 -6.01870 -4.10033 1.01527 1.08951 1.80164 2.70350 3.31571 3.37065 3.38784 3.46271 3.65547 3.95619 4.33497 4.38667 4.42125 4.63895 4.69171 4.74667 4.76959 4.82470 5.01998 5.16618 5.22201 5.28578 5.40525 5.47385 5.55862 5.64052 5.69230 5.70640 5.72034 5.77047 5.89277 5.92487 6.08140 6.16171 6.20854 6.27171 6.31064 6.40344 6.61095 6.63200 6.68029 6.76329 6.87681 7.00257 7.05701 7.18768 7.24631 7.59546 7.83505 7.95737 8.00522 8.17466 8.35687 8.58418 8.93771 9.55365 11.03729 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022697 B = 0.002090 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.337320 B =13394.485056 C =14142.510141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 H 0.088 0.912 4 C 0.126 3.874 5 N -0.703 5.703 6 C 0.512 3.488 7 O -0.514 6.514 8 C 0.495 3.505 9 O -0.525 6.525 10 N -0.567 5.567 11 C 0.050 3.950 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.519 4.519 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.108 3.892 25 C -0.074 4.074 26 C -0.111 4.111 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.120 4.120 30 C -0.114 4.114 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.413 0.587 37 H 0.054 0.946 38 H 0.144 0.856 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.264 0.736 44 H 0.048 0.952 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.401 -5.235 23.158 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 H 0.106 0.894 4 C 0.002 3.998 5 N -0.357 5.357 6 C 0.295 3.705 7 O -0.392 6.392 8 C 0.276 3.724 9 O -0.403 6.403 10 N -0.298 5.298 11 C -0.072 4.072 12 C -0.165 4.165 13 C -0.151 4.151 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.012 4.012 25 C -0.074 4.074 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.142 4.142 29 C -0.138 4.138 30 C -0.132 4.132 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.072 0.928 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.314 -5.319 23.176 24.878 hybrid contribution -0.470 0.793 -0.907 1.293 sum 6.844 -4.526 22.269 23.733 Atomic orbital electron populations 1.21910 0.93306 1.02805 1.02563 1.20386 0.96965 0.99691 0.91292 0.89371 1.21497 1.00534 0.95403 0.82348 1.45840 1.56811 1.28129 1.04939 1.20782 0.79268 0.85456 0.85042 1.90305 1.39462 1.24707 1.84690 1.19751 0.82953 0.85273 0.84472 1.90755 1.36988 1.26920 1.85625 1.48436 1.39449 1.35873 1.06059 1.23082 0.89911 0.88758 1.05441 1.21852 1.00426 0.97288 0.96978 1.21665 0.99730 0.98787 0.94911 1.18970 0.92839 0.91551 0.94482 0.95278 1.21060 1.20124 1.21665 0.92903 0.92297 1.25061 0.95908 0.96692 0.96429 1.69857 1.25276 1.30914 1.26035 0.86620 0.78179 0.79106 0.83887 1.20264 1.21255 1.20225 1.22485 0.99385 0.97976 0.81325 1.19656 0.97770 0.94300 0.95689 1.21068 0.99933 0.94252 0.97692 1.21166 0.97939 0.99952 0.94559 1.21171 0.98675 0.94903 0.99449 1.21143 1.00051 0.94989 0.97586 1.21096 0.97729 0.99967 0.94379 0.92020 0.92001 0.91603 0.90745 0.90816 0.75021 0.92762 0.83999 0.92291 0.92354 0.93077 0.93260 0.92575 0.93408 0.85868 0.85858 0.86021 0.86210 0.86093 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.88 37.15 0.33 -0.83 16 2 C -0.06 -0.51 2.60 -91.78 -0.24 -0.75 16 3 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 4 C 0.13 1.27 4.81 -4.04 -0.02 1.25 16 5 N -0.70 -8.86 5.28 -60.72 -0.32 -9.18 16 6 C 0.51 8.41 7.78 -11.58 -0.09 8.32 16 7 O -0.51 -8.83 13.10 5.50 0.07 -8.76 16 8 C 0.49 10.00 7.74 -11.59 -0.09 9.91 16 9 O -0.53 -11.89 15.95 5.49 0.09 -11.80 16 10 N -0.57 -11.93 2.97 -173.27 -0.51 -12.45 16 11 C 0.05 0.90 6.27 -3.71 -0.02 0.88 16 12 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 13 C -0.11 -2.36 5.11 -26.69 -0.14 -2.49 16 14 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -14.11 8.57 -34.44 -0.30 -14.40 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -25.49 11.38 55.43 0.63 -24.86 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.11 2.64 5.38 -3.71 -0.02 2.62 16 25 C -0.07 -0.60 4.78 -104.63 -0.50 -1.10 16 26 C -0.11 -0.90 8.76 -39.59 -0.35 -1.25 16 27 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 28 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 29 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 30 C -0.11 -0.87 9.67 -39.58 -0.38 -1.25 16 31 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.56 7.18 -51.93 -0.37 0.18 16 34 H 0.07 0.78 7.59 -51.93 -0.39 0.38 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.41 4.87 7.14 -40.82 -0.29 4.58 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.14 2.49 3.78 -56.75 -0.21 2.28 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 46 H 0.12 0.90 7.16 -52.49 -0.38 0.52 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 50 H 0.12 0.76 7.95 -52.49 -0.42 0.34 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -31.11 398.37 -10.27 -41.39 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.74 Total: 6.42 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -3.47 Total: -2.95 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.20 Total: -46.49 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.16 Total: -20.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.11 -10.27 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261680309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.171 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds